Wall clock time and date at job start Tue Mar 31 2020 06:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46949 * 2 1 4 4 C 1.33638 * 122.75149 * 84.97577 * 3 2 1 5 5 S 1.76200 * 107.92292 * 179.80323 * 4 3 2 6 6 C 1.70974 * 90.28317 * 0.27967 * 5 4 3 7 7 C 1.50703 * 124.91449 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46816 * 164.70061 * 7 6 5 9 9 C 1.52998 * 109.46997 * 284.69786 * 7 6 5 10 10 N 1.46900 * 109.47090 * 44.70057 * 7 6 5 11 11 C 1.46904 * 110.99779 * 154.99940 * 10 7 6 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 7 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 7.89248 * 145.56828 * 343.00362 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 N 1.29028 * 110.16858 * 359.71537 * 6 5 4 26 26 H 1.08997 * 109.47502 * 299.99691 * 1 2 3 27 27 H 1.08998 * 109.47442 * 60.00618 * 1 2 3 28 28 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47296 * 239.99582 * 2 1 3 30 30 H 1.09006 * 109.47169 * 119.99984 * 2 1 3 31 31 H 1.07997 * 126.03839 * 0.02562 * 4 3 2 32 32 H 1.08999 * 109.47113 * 60.00456 * 9 7 6 33 33 H 1.09007 * 109.46861 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47259 * 299.99848 * 9 7 6 35 35 H 1.00897 * 111.00127 * 31.04294 * 10 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 11 10 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 11 10 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 39 39 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.1804 2.1353 1.1196 5 16 2.7908 3.7261 0.6709 6 6 2.7782 3.2751 -0.9782 7 6 3.1994 4.1652 -2.1191 8 1 3.3531 3.5612 -3.0134 9 6 2.1076 5.2032 -2.3861 10 7 4.4512 4.8499 -1.7695 11 6 5.1972 5.2315 -2.9761 12 6 6.4913 5.9409 -2.5726 13 1 6.2563 6.7835 -1.9222 14 6 7.3653 4.9974 -1.8565 15 7 8.0397 4.2677 -1.3045 16 6 7.2070 6.4483 -3.8260 17 6 8.4164 7.2522 -3.4232 18 1 8.6513 7.3874 -2.3777 19 6 9.2265 7.8100 -4.3895 20 7 8.9407 7.6451 -5.6625 21 14 10.7298 8.8000 -3.8903 22 1 11.9035 7.8967 -3.7810 23 1 10.9998 9.8405 -4.9148 24 1 10.4815 9.4497 -2.5783 25 7 2.3610 2.0607 -1.1042 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0278 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9674 1.7961 2.1226 32 1 1.9540 5.8071 -1.4918 33 1 2.4122 5.8467 -3.2116 34 1 1.1789 4.6951 -2.6455 35 1 5.0174 4.2792 -1.1597 36 1 4.5889 5.9030 -3.5821 37 1 5.4367 4.3383 -3.5530 38 1 6.5284 7.0770 -4.4025 39 1 7.5208 5.5998 -4.4338 40 1 9.5105 8.0378 -6.3423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338551322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:41 Heat of formation + Delta-G solvation = 47.471833 kcal Electronic energy + Delta-G solvation = -20195.751514 eV Core-core repulsion = 17136.555135 eV Total energy + Delta-G solvation = -3059.196378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17374 -37.83801 -35.94831 -34.07081 -33.47944 -32.13000 -30.01370 -29.00149 -26.55773 -25.67652 -24.08998 -22.63459 -21.89279 -20.95319 -19.73652 -17.89405 -16.80097 -16.62114 -16.07786 -15.40527 -15.24338 -14.65521 -14.60563 -14.26047 -14.02504 -13.36162 -13.28853 -13.08668 -12.80996 -12.57386 -12.38338 -12.23698 -12.06301 -11.96116 -11.88276 -11.51320 -11.38677 -11.22770 -11.10491 -11.00439 -10.76607 -10.55931 -10.28739 -9.76974 -9.60228 -9.51195 -9.25684 -8.86505 -8.56362 -8.46286 -6.10791 -4.13921 0.54176 1.24528 1.67174 2.59526 3.29286 3.36004 3.39148 3.51725 3.58034 3.65832 4.23221 4.40940 4.56425 4.75769 4.76742 4.97472 5.03206 5.10791 5.20728 5.24753 5.27399 5.30064 5.46689 5.56899 5.64549 5.66793 5.76388 5.80075 5.85176 6.02191 6.04288 6.16657 6.30532 6.50281 6.89342 7.19616 7.41416 7.50869 7.61897 7.84176 8.21389 8.36922 8.90539 9.51624 11.00080 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.002877 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.426950 B = 9731.477697 C = 9958.852731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.069 3.931 4 C -0.275 4.275 5 S 0.162 5.838 6 C 0.045 3.955 7 C 0.158 3.842 8 H 0.077 0.923 9 C -0.135 4.135 10 N -0.685 5.685 11 C 0.067 3.933 12 C 0.008 3.992 13 H 0.113 0.887 14 C 0.239 3.761 15 N -0.475 5.475 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.470 5.470 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.174 0.826 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.341 0.659 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.025 0.975 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 -9.566 10.281 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.064 4.064 4 C -0.415 4.415 5 S 0.418 5.582 6 C -0.233 4.233 7 C 0.045 3.955 8 H 0.095 0.905 9 C -0.194 4.194 10 N -0.318 5.318 11 C -0.063 4.063 12 C -0.014 4.014 13 H 0.131 0.869 14 C -0.078 4.078 15 N -0.151 5.151 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 N -0.185 5.185 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.191 0.809 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.186 -9.300 11.026 23.212 hybrid contribution 0.804 -0.909 -0.251 1.239 sum -17.383 -10.209 10.775 22.858 Atomic orbital electron populations 1.21726 0.94321 1.01924 1.02257 1.20121 0.96113 0.89344 1.03411 1.20241 1.01028 0.98459 0.86670 1.26939 1.12210 0.98306 1.04022 1.84203 1.58466 1.12894 1.02622 1.27155 1.02770 0.94526 0.98825 1.20086 0.91728 0.91793 0.91919 0.90518 1.21830 0.96415 0.98057 1.03117 1.60847 1.06183 1.46448 1.18306 1.22185 0.93643 0.99693 0.90736 1.19333 0.89534 0.93194 0.99362 0.86928 1.29361 0.93239 0.93067 0.92138 1.81070 1.10304 1.12024 1.11750 1.19166 0.95330 0.96736 0.89366 1.21137 1.09613 1.32719 0.92993 0.92488 1.24954 0.97826 0.96298 0.94901 1.69938 1.38615 1.44896 0.99543 0.86589 0.83178 0.79884 0.78412 1.20706 1.21077 1.19709 1.66119 1.14233 1.06451 1.31695 0.92651 0.92357 0.92011 0.90086 0.90347 0.80860 0.91546 0.90715 0.92242 0.84056 0.88462 0.94162 0.94086 0.95710 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 37.15 0.37 -0.67 16 2 C -0.05 -0.43 6.35 -27.89 -0.18 -0.60 16 3 C 0.07 0.77 5.99 -84.23 -0.50 0.27 16 4 C -0.28 -2.76 11.14 29.12 0.32 -2.43 16 5 S 0.16 1.76 22.86 -107.50 -2.46 -0.70 16 6 C 0.05 0.56 5.99 -13.45 -0.08 0.48 16 7 C 0.16 1.86 3.12 -68.86 -0.22 1.65 16 8 H 0.08 0.95 7.80 -51.93 -0.40 0.54 16 9 C -0.14 -1.36 9.40 37.16 0.35 -1.01 16 10 N -0.68 -8.89 6.11 -107.95 -0.66 -9.55 16 11 C 0.07 0.95 4.92 -3.82 -0.02 0.93 16 12 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 13 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 14 C 0.24 4.79 12.98 -20.74 -0.27 4.52 16 15 N -0.47 -10.35 18.54 42.18 0.78 -9.57 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.47 -6.20 10.53 -8.06 -0.08 -6.29 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.34 4.81 7.32 -39.29 -0.29 4.53 16 36 H 0.10 1.24 7.44 -51.93 -0.39 0.86 16 37 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -30.20 356.31 -8.37 -38.57 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.07 Total: -0.54 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.97 Total: -8.88 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.77 Total: -50.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.46 Total: -0.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.20 -8.37 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338551322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.042 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds