Wall clock time and date at job start Tue Mar 31 2020 06:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46949 * 2 1 4 4 C 1.33638 * 122.75149 * 84.97577 * 3 2 1 5 5 S 1.76200 * 107.92292 * 179.80323 * 4 3 2 6 6 C 1.70974 * 90.28317 * 0.27967 * 5 4 3 7 7 C 1.50703 * 124.91449 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46816 * 164.70061 * 7 6 5 9 9 C 1.52998 * 109.46997 * 284.69786 * 7 6 5 10 10 N 1.46900 * 109.47090 * 44.70057 * 7 6 5 11 11 C 1.46904 * 110.99779 * 154.99940 * 10 7 6 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 7 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 7.89248 * 145.56828 * 343.00362 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 N 1.29028 * 110.16858 * 359.71537 * 6 5 4 26 26 H 1.08997 * 109.47502 * 299.99691 * 1 2 3 27 27 H 1.08998 * 109.47442 * 60.00618 * 1 2 3 28 28 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47296 * 239.99582 * 2 1 3 30 30 H 1.09006 * 109.47169 * 119.99984 * 2 1 3 31 31 H 1.07997 * 126.03839 * 0.02562 * 4 3 2 32 32 H 1.08999 * 109.47113 * 60.00456 * 9 7 6 33 33 H 1.09007 * 109.46861 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47259 * 299.99848 * 9 7 6 35 35 H 1.00897 * 111.00127 * 31.04294 * 10 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 11 10 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 11 10 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 39 39 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.1804 2.1353 1.1196 5 16 2.7908 3.7261 0.6709 6 6 2.7782 3.2751 -0.9782 7 6 3.1994 4.1652 -2.1191 8 1 3.3531 3.5612 -3.0134 9 6 2.1076 5.2032 -2.3861 10 7 4.4512 4.8499 -1.7695 11 6 5.1972 5.2315 -2.9761 12 6 6.4913 5.9409 -2.5726 13 1 6.2563 6.7835 -1.9222 14 6 7.3653 4.9974 -1.8565 15 7 8.0397 4.2677 -1.3045 16 6 7.2070 6.4483 -3.8260 17 6 8.4164 7.2522 -3.4232 18 1 8.6513 7.3874 -2.3777 19 6 9.2265 7.8100 -4.3895 20 7 8.9407 7.6451 -5.6625 21 14 10.7298 8.8000 -3.8903 22 1 11.9035 7.8967 -3.7810 23 1 10.9998 9.8405 -4.9148 24 1 10.4815 9.4497 -2.5783 25 7 2.3610 2.0607 -1.1042 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0278 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9674 1.7961 2.1226 32 1 1.9540 5.8071 -1.4918 33 1 2.4122 5.8467 -3.2116 34 1 1.1789 4.6951 -2.6455 35 1 5.0174 4.2792 -1.1597 36 1 4.5889 5.9030 -3.5821 37 1 5.4367 4.3383 -3.5530 38 1 6.5284 7.0770 -4.4025 39 1 7.5208 5.5998 -4.4338 40 1 9.5105 8.0378 -6.3423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338551322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:40 Heat of formation + Delta-G solvation = 29.234091 kcal Electronic energy + Delta-G solvation = -20196.542362 eV Core-core repulsion = 17136.555135 eV Total energy + Delta-G solvation = -3059.987226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02324 -39.11548 -37.28951 -35.63795 -34.61298 -33.62757 -31.22297 -29.83885 -28.10043 -26.63310 -25.09068 -23.88292 -23.50779 -21.87519 -20.58139 -18.79869 -18.47567 -18.25760 -17.19602 -16.65271 -16.30924 -16.09763 -15.47346 -15.24837 -14.89679 -14.68889 -14.63496 -14.35720 -14.09478 -13.90886 -13.55698 -13.38949 -13.18692 -13.09370 -12.90299 -12.85737 -12.73129 -12.49389 -12.36113 -12.22067 -12.09313 -11.94402 -11.78938 -11.41152 -11.16499 -10.64678 -10.54540 -10.37020 -9.68947 -9.62384 -8.18664 -6.26414 -0.30014 0.41867 0.83758 1.40569 1.42949 1.51991 1.74629 1.91979 1.94214 2.41953 2.72374 3.16442 3.22973 3.26598 3.77882 4.06982 4.11650 4.24499 4.30254 4.37735 4.42112 4.44288 4.55710 4.61106 4.67601 4.80445 4.92816 4.96801 5.01962 5.04420 5.15776 5.17780 5.34471 5.36807 5.49042 5.63285 5.79458 5.83630 6.07635 6.21289 6.73632 6.77263 6.88319 7.42017 8.92212 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.002877 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.426950 B = 9731.477697 C = 9958.852731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.048 3.952 4 C -0.267 4.267 5 S 0.172 5.828 6 C 0.026 3.974 7 C 0.159 3.841 8 H 0.069 0.931 9 C -0.130 4.130 10 N -0.678 5.678 11 C 0.078 3.922 12 C 0.020 3.980 13 H 0.129 0.871 14 C 0.249 3.751 15 N -0.506 5.506 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.947 3.053 22 H -0.285 1.285 23 H -0.279 1.279 24 H -0.264 1.264 25 N -0.495 5.495 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.202 0.798 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.334 0.666 36 H 0.118 0.882 37 H 0.035 0.965 38 H 0.041 0.959 39 H -0.001 1.001 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -9.410 11.649 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.084 4.084 4 C -0.406 4.406 5 S 0.427 5.573 6 C -0.252 4.252 7 C 0.047 3.953 8 H 0.087 0.913 9 C -0.189 4.189 10 N -0.310 5.310 11 C -0.052 4.052 12 C -0.002 4.002 13 H 0.147 0.853 14 C -0.067 4.067 15 N -0.184 5.184 16 C 0.000 4.000 17 C -0.576 4.576 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.212 1.212 23 H -0.204 1.204 24 H -0.188 1.188 25 N -0.211 5.211 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.230 -9.142 12.401 24.641 hybrid contribution 1.098 -1.002 -0.638 1.617 sum -18.133 -10.144 11.763 23.876 Atomic orbital electron populations 1.21690 0.93332 1.02887 1.01774 1.20218 0.96916 0.87968 1.03850 1.20673 1.01540 0.99632 0.86569 1.27292 1.10820 0.97523 1.05012 1.84107 1.58178 1.13468 1.01505 1.27196 1.03631 0.94662 0.99695 1.20104 0.91456 0.92146 0.91640 0.91339 1.21801 0.95955 0.97629 1.03474 1.60849 1.06236 1.46567 1.17373 1.22051 0.92307 0.99595 0.91267 1.19253 0.90116 0.93592 0.97196 0.85338 1.29778 0.92737 0.92649 0.91543 1.81068 1.11208 1.13221 1.12855 1.18991 0.94674 0.95364 0.91009 1.21558 1.10678 1.32519 0.92825 0.92735 1.25702 1.00505 0.97552 0.95027 1.70029 1.39799 1.46117 1.00366 0.85715 0.79829 0.78629 0.78542 1.21179 1.20394 1.18783 1.66128 1.14858 1.06994 1.33115 0.91967 0.93939 0.90335 0.91110 0.88419 0.78115 0.91294 0.90000 0.91710 0.84845 0.86431 0.94693 0.94083 0.98222 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.05 -0.78 6.35 29.85 0.19 -0.59 16 3 C 0.05 1.02 5.99 41.52 0.25 1.27 16 4 C -0.27 -4.84 11.14 66.78 0.74 -4.10 16 5 S 0.17 3.48 22.86 -56.49 -1.29 2.19 16 6 C 0.03 0.61 5.99 88.52 0.53 1.14 16 7 C 0.16 3.62 3.12 44.17 0.14 3.76 16 8 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 9 C -0.13 -2.40 9.40 71.98 0.68 -1.73 16 10 N -0.68 -16.79 6.11 -495.45 -3.03 -19.82 16 11 C 0.08 2.11 4.92 86.30 0.42 2.54 16 12 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 13 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 14 C 0.25 9.87 12.98 89.44 1.16 11.03 16 15 N -0.51 -21.96 18.54 20.01 0.37 -21.59 16 16 C 0.04 1.73 4.42 29.85 0.13 1.87 16 17 C -0.54 -28.12 8.60 25.60 0.22 -27.90 16 18 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 19 C 0.01 0.60 5.46 84.66 0.46 1.07 16 20 N -0.92 -52.69 13.29 21.45 0.28 -52.41 16 21 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 N -0.50 -12.82 10.53 -179.40 -1.89 -14.71 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.39 7.45 -2.38 -0.02 1.37 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.33 9.15 7.32 -89.70 -0.66 8.49 16 36 H 0.12 2.76 7.44 -2.39 -0.02 2.74 16 37 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 38 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -64.02 356.31 2.46 -61.56 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.38 Total: 11.56 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.61 Total: -12.05 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.26 Total: -108.52 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.29 Total: 2.19 kcal Total: -64.02 2.46 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338551322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.794 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds