Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47581 * 2 1 4 4 C 1.33645 * 122.74804 * 85.01987 * 3 2 1 5 5 S 1.76195 * 107.92038 * 180.02562 * 4 3 2 6 6 C 1.70972 * 90.28584 * 0.02562 * 5 4 3 7 7 C 1.50701 * 124.91489 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46868 * 165.02038 * 7 6 5 9 9 C 1.53005 * 109.47018 * 285.01886 * 7 6 5 10 10 N 1.46901 * 109.47536 * 45.02045 * 7 6 5 11 11 C 1.46895 * 111.00119 * 155.00068 * 10 7 6 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 7 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 9.38917 * 117.85885 * 350.43508 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 N 1.29028 * 110.16784 * 0.24025 * 6 5 4 26 26 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46978 * 299.99940 * 1 2 3 28 28 H 1.09002 * 109.47085 * 59.99512 * 1 2 3 29 29 H 1.08994 * 109.47234 * 239.99857 * 2 1 3 30 30 H 1.09003 * 109.47452 * 119.99607 * 2 1 3 31 31 H 1.07992 * 126.03650 * 0.04707 * 4 3 2 32 32 H 1.08998 * 109.46661 * 300.00566 * 9 7 6 33 33 H 1.08995 * 109.46764 * 60.00153 * 9 7 6 34 34 H 1.08994 * 109.47003 * 180.02562 * 9 7 6 35 35 H 1.00903 * 110.99388 * 31.04505 * 10 7 6 36 36 H 1.08998 * 109.47324 * 59.99878 * 11 10 7 37 37 H 1.09002 * 109.47421 * 300.00055 * 11 10 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1814 2.1349 1.1198 5 16 2.7855 3.7279 0.6705 6 6 2.7769 3.2756 -0.9783 7 6 3.1958 4.1666 -2.1193 8 1 3.3476 3.5633 -3.0144 9 6 2.1033 5.2048 -2.3832 10 7 4.4482 4.8511 -1.7719 11 6 5.1916 5.2338 -2.9797 12 6 6.4865 5.9429 -2.5784 13 1 7.0554 5.3052 -1.9017 14 6 6.1629 7.2100 -1.9026 15 7 5.9175 8.1856 -1.3793 16 6 7.3193 6.2303 -3.8292 17 6 8.6473 6.8169 -3.4246 18 1 8.8746 6.9691 -2.3799 19 6 9.5745 7.1536 -4.3881 20 7 9.2977 6.9679 -5.6603 21 14 11.2234 7.8735 -3.8862 22 1 11.2871 7.9806 -2.4065 23 1 12.3161 6.9893 -4.3655 24 1 11.3784 9.2224 -4.4877 25 7 2.3546 2.0630 -1.1047 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9694 1.7954 2.1228 32 1 1.1740 4.6968 -2.6409 33 1 1.9515 5.8079 -1.4881 34 1 2.4060 5.8489 -3.2087 35 1 5.0157 4.2800 -1.1637 36 1 4.5820 5.9057 -3.5839 37 1 5.4300 4.3409 -3.5578 38 1 6.7878 6.9386 -4.4648 39 1 7.4838 5.3027 -4.3773 40 1 9.9499 7.2050 -6.3381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338551331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = 48.141865 kcal Electronic energy + Delta-G solvation = -20166.185118 eV Core-core repulsion = 17107.017794 eV Total energy + Delta-G solvation = -3059.167324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18057 -37.76893 -35.91178 -34.04323 -33.46086 -32.12630 -30.00467 -29.00073 -26.57892 -25.67530 -24.08252 -22.62744 -21.82900 -20.96484 -19.73593 -17.98058 -17.07705 -16.45052 -15.86141 -15.32507 -15.17636 -14.65253 -14.55920 -14.24400 -14.04756 -13.79739 -13.20839 -12.94480 -12.67083 -12.48506 -12.34175 -12.15980 -12.12274 -11.93721 -11.86649 -11.49514 -11.35404 -11.19940 -11.10093 -11.05508 -10.71407 -10.53211 -10.26463 -9.77442 -9.60019 -9.51696 -9.23926 -8.87323 -8.54070 -8.46065 -6.11043 -4.14098 0.53344 1.24154 1.67307 2.58510 3.27758 3.36120 3.40590 3.60396 3.75847 3.82883 4.23494 4.41036 4.56149 4.75468 4.87809 4.96905 5.02448 5.10456 5.19968 5.24524 5.27334 5.29359 5.51648 5.56126 5.65123 5.67766 5.75043 5.79286 5.84439 5.97913 6.02459 6.14876 6.33787 6.45506 6.89919 7.25090 7.40953 7.50793 7.61272 7.84383 8.21363 8.56852 8.90861 9.51548 10.99884 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002875 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.356191 B = 9735.620992 C = 9897.228146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.069 3.931 4 C -0.276 4.276 5 S 0.163 5.837 6 C 0.047 3.953 7 C 0.160 3.840 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.687 5.687 11 C 0.066 3.934 12 C 0.010 3.990 13 H 0.099 0.901 14 C 0.255 3.745 15 N -0.476 5.476 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.470 5.470 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.174 0.826 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.344 0.656 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 -13.927 10.409 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.415 4.415 5 S 0.419 5.581 6 C -0.231 4.231 7 C 0.047 3.953 8 H 0.096 0.904 9 C -0.195 4.195 10 N -0.320 5.320 11 C -0.063 4.063 12 C -0.012 4.012 13 H 0.117 0.883 14 C -0.062 4.062 15 N -0.153 5.153 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 N -0.185 5.185 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.191 0.809 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.176 -11.107 11.116 23.280 hybrid contribution 1.161 -1.683 -0.253 2.060 sum -16.015 -12.789 10.863 23.196 Atomic orbital electron populations 1.21729 0.94377 1.01922 1.02256 1.20117 0.96075 0.89356 1.03399 1.20242 1.01085 0.98437 0.86643 1.26949 1.12344 0.98229 1.04023 1.84306 1.58615 1.12523 1.02689 1.27139 1.02710 0.94508 0.98791 1.20052 0.91695 0.91617 0.91928 0.90384 1.21833 0.96550 0.98119 1.03043 1.60778 1.06191 1.46525 1.18471 1.22169 0.93834 0.99563 0.90752 1.19206 0.95437 0.86904 0.99679 0.88282 1.28737 0.91210 0.94249 0.92054 1.80900 1.10874 1.12318 1.11230 1.19174 0.93654 0.98391 0.89503 1.21174 0.99812 1.42222 0.93175 0.92433 1.24957 0.98661 0.95494 0.94899 1.69948 1.35456 1.47902 0.99688 0.86536 0.83791 0.78892 0.78865 1.19675 1.20869 1.20951 1.66123 1.14191 1.06513 1.31636 0.92006 0.92684 0.92363 0.90063 0.90347 0.80907 0.92211 0.91712 0.90971 0.83756 0.89953 0.92701 0.95460 0.94397 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.89 37.15 0.37 -0.64 16 2 C -0.05 -0.39 6.35 -27.88 -0.18 -0.57 16 3 C 0.07 0.73 5.99 -84.22 -0.50 0.22 16 4 C -0.28 -2.62 11.14 29.12 0.32 -2.30 16 5 S 0.16 1.72 22.87 -107.50 -2.46 -0.74 16 6 C 0.05 0.55 5.98 -13.46 -0.08 0.47 16 7 C 0.16 1.86 3.12 -68.86 -0.22 1.64 16 8 H 0.08 0.92 7.80 -51.93 -0.40 0.51 16 9 C -0.14 -1.50 9.40 37.16 0.35 -1.15 16 10 N -0.69 -8.68 5.82 -107.95 -0.63 -9.31 16 11 C 0.07 0.93 4.85 -3.83 -0.02 0.91 16 12 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 13 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 14 C 0.25 5.18 13.66 -20.83 -0.28 4.89 16 15 N -0.48 -10.59 18.52 42.07 0.78 -9.81 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.84 8.60 -34.44 -0.30 -14.14 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 N -0.47 -5.86 10.53 -8.05 -0.08 -5.95 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.79 7.45 -51.93 -0.39 0.41 16 35 H 0.34 4.14 8.26 -39.29 -0.32 3.81 16 36 H 0.08 1.17 7.43 -51.93 -0.39 0.79 16 37 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -30.54 357.49 -8.37 -38.91 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.10 Total: -1.56 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.98 Total: -8.51 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.80 Total: -49.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.46 Total: -0.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.54 -8.37 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338551331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.057 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds