Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47581 * 2 1 4 4 C 1.33645 * 122.74804 * 85.01987 * 3 2 1 5 5 S 1.76195 * 107.92038 * 180.02562 * 4 3 2 6 6 C 1.70972 * 90.28584 * 0.02562 * 5 4 3 7 7 C 1.50701 * 124.91489 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46868 * 165.02038 * 7 6 5 9 9 C 1.53005 * 109.47018 * 285.01886 * 7 6 5 10 10 N 1.46901 * 109.47536 * 45.02045 * 7 6 5 11 11 C 1.46895 * 111.00119 * 155.00068 * 10 7 6 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 7 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 9.38917 * 117.85885 * 350.43508 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 N 1.29028 * 110.16784 * 0.24025 * 6 5 4 26 26 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46978 * 299.99940 * 1 2 3 28 28 H 1.09002 * 109.47085 * 59.99512 * 1 2 3 29 29 H 1.08994 * 109.47234 * 239.99857 * 2 1 3 30 30 H 1.09003 * 109.47452 * 119.99607 * 2 1 3 31 31 H 1.07992 * 126.03650 * 0.04707 * 4 3 2 32 32 H 1.08998 * 109.46661 * 300.00566 * 9 7 6 33 33 H 1.08995 * 109.46764 * 60.00153 * 9 7 6 34 34 H 1.08994 * 109.47003 * 180.02562 * 9 7 6 35 35 H 1.00903 * 110.99388 * 31.04505 * 10 7 6 36 36 H 1.08998 * 109.47324 * 59.99878 * 11 10 7 37 37 H 1.09002 * 109.47421 * 300.00055 * 11 10 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1814 2.1349 1.1198 5 16 2.7855 3.7279 0.6705 6 6 2.7769 3.2756 -0.9783 7 6 3.1958 4.1666 -2.1193 8 1 3.3476 3.5633 -3.0144 9 6 2.1033 5.2048 -2.3832 10 7 4.4482 4.8511 -1.7719 11 6 5.1916 5.2338 -2.9797 12 6 6.4865 5.9429 -2.5784 13 1 7.0554 5.3052 -1.9017 14 6 6.1629 7.2100 -1.9026 15 7 5.9175 8.1856 -1.3793 16 6 7.3193 6.2303 -3.8292 17 6 8.6473 6.8169 -3.4246 18 1 8.8746 6.9691 -2.3799 19 6 9.5745 7.1536 -4.3881 20 7 9.2977 6.9679 -5.6603 21 14 11.2234 7.8735 -3.8862 22 1 11.2871 7.9806 -2.4065 23 1 12.3161 6.9893 -4.3655 24 1 11.3784 9.2224 -4.4877 25 7 2.3546 2.0630 -1.1047 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9694 1.7954 2.1228 32 1 1.1740 4.6968 -2.6409 33 1 1.9515 5.8079 -1.4881 34 1 2.4060 5.8489 -3.2087 35 1 5.0157 4.2800 -1.1637 36 1 4.5820 5.9057 -3.5839 37 1 5.4300 4.3409 -3.5578 38 1 6.7878 6.9386 -4.4648 39 1 7.4838 5.3027 -4.3773 40 1 9.9499 7.2050 -6.3381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338551331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = 29.732426 kcal Electronic energy + Delta-G solvation = -20166.983411 eV Core-core repulsion = 17107.017794 eV Total energy + Delta-G solvation = -3059.965617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99139 -39.01777 -37.27623 -35.59149 -34.59287 -33.60771 -31.21426 -29.82589 -28.13284 -26.61057 -25.07112 -23.87406 -23.42413 -21.87748 -20.53994 -18.96789 -18.46902 -18.24469 -16.85742 -16.65648 -16.19658 -16.06414 -15.51435 -15.15405 -15.07725 -14.84479 -14.52635 -14.18882 -14.01096 -13.75751 -13.51575 -13.41180 -13.20566 -13.05688 -12.97630 -12.84886 -12.71865 -12.48772 -12.35609 -12.26427 -12.08368 -11.87681 -11.74981 -11.39926 -11.14242 -10.61504 -10.54914 -10.34340 -9.66452 -9.54219 -8.19005 -6.26730 -0.27094 0.44737 0.87834 1.39416 1.42777 1.52858 1.78018 2.10822 2.17550 2.41889 2.74300 3.16674 3.27356 3.39164 3.80410 4.08500 4.15105 4.25420 4.33567 4.38736 4.40560 4.46864 4.58020 4.64355 4.71794 4.74128 4.86445 4.89929 5.03039 5.05460 5.18918 5.20232 5.26551 5.39379 5.48590 5.63146 5.79369 5.85886 6.20934 6.27160 6.80129 6.84904 6.95828 7.41861 8.92092 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002875 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.356191 B = 9735.620992 C = 9897.228146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.050 3.950 4 C -0.265 4.265 5 S 0.162 5.838 6 C 0.032 3.968 7 C 0.164 3.836 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.688 5.688 11 C 0.078 3.922 12 C 0.021 3.979 13 H 0.119 0.881 14 C 0.265 3.735 15 N -0.511 5.511 16 C 0.037 3.963 17 C -0.537 4.537 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.948 3.052 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.285 1.285 25 N -0.490 5.490 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.201 0.799 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.348 0.652 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.003 0.997 39 H 0.035 0.965 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 -15.166 11.770 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.082 4.082 4 C -0.404 4.404 5 S 0.418 5.582 6 C -0.246 4.246 7 C 0.052 3.948 8 H 0.096 0.904 9 C -0.192 4.192 10 N -0.322 5.322 11 C -0.052 4.052 12 C -0.001 4.001 13 H 0.136 0.864 14 C -0.051 4.051 15 N -0.188 5.188 16 C -0.001 4.001 17 C -0.575 4.575 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.774 3.226 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.212 1.212 25 N -0.206 5.206 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.218 0.782 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.054 0.946 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.510 -12.358 12.487 24.804 hybrid contribution 1.222 -1.328 -0.638 1.914 sum -16.287 -13.685 11.848 24.350 Atomic orbital electron populations 1.21700 0.93665 1.02845 1.01640 1.20212 0.96620 0.87974 1.04039 1.20668 1.01500 0.99581 0.86480 1.27275 1.10903 0.97216 1.05025 1.84283 1.58588 1.13401 1.01956 1.27076 1.03612 0.94597 0.99314 1.19982 0.91109 0.91644 0.92081 0.90447 1.21799 0.96796 0.97930 1.02639 1.60703 1.06495 1.47189 1.17787 1.21969 0.92115 0.99718 0.91349 1.19140 0.96939 0.86391 0.97612 0.86374 1.29197 0.90205 0.94322 0.91371 1.80901 1.12210 1.13253 1.12437 1.18992 0.92746 0.97274 0.91132 1.21584 1.01270 1.41664 0.92966 0.92755 1.25706 1.01916 0.96174 0.95025 1.70038 1.36592 1.49199 1.00525 0.85653 0.80394 0.78066 0.78514 1.19369 1.19905 1.21167 1.66129 1.14609 1.06920 1.32942 0.90334 0.92174 0.94046 0.90826 0.88289 0.78229 0.91416 0.92311 0.91154 0.83223 0.90132 0.91147 0.97837 0.94627 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 71.98 0.71 -0.99 16 2 C -0.05 -0.68 6.35 29.85 0.19 -0.49 16 3 C 0.05 0.97 5.99 41.52 0.25 1.22 16 4 C -0.27 -4.46 11.14 66.78 0.74 -3.71 16 5 S 0.16 3.19 22.87 -56.49 -1.29 1.90 16 6 C 0.03 0.71 5.98 88.52 0.53 1.24 16 7 C 0.16 3.65 3.12 44.17 0.14 3.79 16 8 H 0.08 1.73 7.80 -2.39 -0.02 1.72 16 9 C -0.13 -2.81 9.40 71.98 0.68 -2.13 16 10 N -0.69 -16.51 5.82 -495.46 -2.88 -19.39 16 11 C 0.08 2.10 4.85 86.30 0.42 2.52 16 12 C 0.02 0.72 2.35 -12.60 -0.03 0.70 16 13 H 0.12 3.67 8.14 -2.38 -0.02 3.65 16 14 C 0.27 10.62 13.66 89.47 1.22 11.84 16 15 N -0.51 -22.52 18.52 19.98 0.37 -22.15 16 16 C 0.04 1.69 4.42 29.85 0.13 1.82 16 17 C -0.54 -28.10 8.60 25.60 0.22 -27.88 16 18 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 19 C 0.01 0.58 5.46 84.66 0.46 1.04 16 20 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 21 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 N -0.49 -11.74 10.53 -179.40 -1.89 -13.63 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.50 7.45 -2.39 -0.02 1.48 16 35 H 0.35 7.84 8.26 -89.69 -0.74 7.10 16 36 H 0.08 2.22 7.43 -2.39 -0.02 2.20 16 37 H 0.07 1.70 8.06 -2.39 -0.02 1.69 16 38 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -64.51 357.49 2.58 -61.94 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.30 Total: 9.52 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.66 Total: -11.03 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -4.12 Total: -107.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.29 Total: 1.90 kcal Total: -64.51 2.58 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338551331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.668 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds