Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48506 * 109.46977 * 240.00029 * 3 2 1 5 5 H 1.48498 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47349 * 120.00130 * 3 2 1 7 7 C 1.38811 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00820 * 165.40567 * 7 2 1 9 9 N 1.36944 * 119.99738 * 345.40512 * 7 2 1 10 10 C 1.46927 * 120.62920 * 328.67013 * 9 7 2 11 11 C 1.53185 * 108.77567 * 233.58682 * 10 9 7 12 12 C 1.53043 * 109.31196 * 305.36563 * 11 10 9 13 13 O 1.45204 * 109.45799 * 181.38782 * 12 11 10 14 14 C 1.34229 * 116.99847 * 149.97458 * 13 12 11 15 15 O 1.20829 * 120.00045 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99911 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.51109 * 273.91426 * 16 14 13 18 18 C 1.56976 * 117.18740 * 127.33397 * 16 14 13 19 19 H 1.08998 * 120.94072 * 142.01489 * 18 16 14 20 20 C 1.54416 * 118.12498 * 345.11341 * 18 16 14 21 21 C 1.54912 * 103.66384 * 320.27131 * 20 18 16 22 22 C 1.52482 * 102.93954 * 322.18384 * 21 20 18 23 23 O 1.20758 * 127.57739 * 218.29584 * 22 21 20 24 24 C 1.51833 * 104.84786 * 38.32623 * 22 21 20 25 25 H 1.08998 * 117.25632 * 196.48711 * 24 22 21 26 26 C 1.53034 * 109.52532 * 61.37277 * 12 11 10 27 27 C 1.46922 * 120.63382 * 148.64556 * 9 7 2 28 28 H 0.97000 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.58305 * 113.79608 * 10 9 7 30 30 H 1.09006 * 109.70368 * 353.44591 * 10 9 7 31 31 H 1.08998 * 109.49710 * 185.41479 * 11 10 9 32 32 H 1.09001 * 109.49772 * 65.31935 * 11 10 9 33 33 H 1.09004 * 109.45752 * 301.35560 * 12 11 10 34 34 H 1.09006 * 110.58733 * 201.73165 * 20 18 16 35 35 H 1.08996 * 110.59359 * 78.82006 * 20 18 16 36 36 H 1.08993 * 110.72172 * 203.81624 * 21 20 18 37 37 H 1.09003 * 110.87043 * 80.61411 * 21 20 18 38 38 H 1.08994 * 109.50152 * 58.58161 * 26 12 11 39 39 H 1.09008 * 109.49707 * 178.67774 * 26 12 11 40 40 H 1.08994 * 109.59094 * 246.20423 * 27 9 7 41 41 H 1.09004 * 109.58198 * 6.48753 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2171 -0.2362 9 7 1.3588 -2.3691 0.2978 10 6 0.2259 -2.3759 1.2334 11 6 0.4975 -3.4115 2.3290 12 6 0.7870 -4.7681 1.6825 13 8 1.0125 -5.7596 2.7191 14 6 0.6733 -7.0268 2.4345 15 8 0.2031 -7.2984 1.3551 16 6 0.8780 -8.1104 3.4616 17 1 1.8685 -8.5652 3.4732 18 6 -0.3584 -9.0138 3.8071 19 1 -0.2379 -10.0807 3.9949 20 6 -1.7571 -8.5350 3.3612 21 6 -1.7220 -7.0085 3.6231 22 6 -0.9294 -6.9029 4.9214 23 8 -1.1223 -6.1462 5.8425 24 6 0.1562 -7.9577 4.8014 25 1 0.6699 -8.2517 5.7167 26 6 2.0333 -4.6592 0.8012 27 6 1.7790 -3.6380 -0.3120 28 1 -0.4850 0.8400 0.0004 29 1 -0.6872 -2.6394 0.6995 30 1 0.1145 -1.3890 1.6828 31 1 -0.3765 -3.4954 2.9749 32 1 1.3585 -3.0988 2.9198 33 1 -0.0646 -5.0685 1.0719 34 1 -2.5339 -9.0089 3.9614 35 1 -1.9123 -8.7386 2.3018 36 1 -2.7305 -6.6164 3.7539 37 1 -1.2090 -6.4876 2.8146 38 1 2.8797 -4.3348 1.4065 39 1 2.2527 -5.6314 0.3596 40 1 0.9926 -4.0045 -0.9717 41 1 2.6935 -3.4831 -0.8845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342969788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -65.413002 kcal Electronic energy + Delta-G solvation = -24360.371065 eV Core-core repulsion = 20821.234011 eV Total energy + Delta-G solvation = -3539.137054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59714 -39.64879 -37.89452 -37.05997 -35.85100 -32.73329 -31.63850 -30.37959 -29.70004 -26.86049 -26.16846 -24.82340 -22.53182 -22.15828 -21.17090 -20.13639 -19.64790 -19.15249 -17.69577 -17.16326 -16.86718 -16.34996 -15.67446 -15.05113 -14.89798 -14.59186 -14.46268 -13.90085 -13.61742 -13.58530 -13.33164 -13.05469 -12.74592 -12.65742 -12.52833 -11.90842 -11.69461 -11.55130 -11.26007 -11.13306 -11.06857 -10.79384 -10.75353 -10.56868 -10.47682 -10.31147 -10.21310 -9.96299 -9.73176 -9.61933 -9.48729 -8.51729 -6.70674 -5.83830 -3.30369 1.49953 2.14890 2.54905 3.13145 3.37305 3.42898 3.44107 3.70363 3.96252 4.06111 4.27493 4.46210 4.60393 4.71768 4.86480 4.97795 5.09981 5.20120 5.31682 5.33092 5.38189 5.42666 5.49583 5.55991 5.64030 5.68643 5.70368 5.95929 6.19154 6.28992 6.36612 6.46660 6.54715 6.69975 6.77077 6.91243 7.22446 7.24636 7.53643 7.76132 7.81917 8.41814 9.16026 9.77611 10.35903 11.25425 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.003851 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541018 B = 7268.380510 C = 7676.027260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C 0.097 3.903 13 O -0.354 6.354 14 C 0.484 3.516 15 O -0.500 6.500 16 C -0.107 4.107 17 H 0.159 0.841 18 C -0.107 4.107 19 H 0.141 0.859 20 C -0.096 4.096 21 C -0.205 4.205 22 C 0.397 3.603 23 O -0.423 6.423 24 C -0.215 4.215 25 H 0.138 0.862 26 C -0.146 4.146 27 C 0.149 3.851 28 H 0.256 0.744 29 H 0.023 0.977 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -19.051 8.033 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.051 3.949 11 C -0.176 4.176 12 C 0.044 3.956 13 O -0.271 6.271 14 C 0.327 3.673 15 O -0.388 6.388 16 C -0.126 4.126 17 H 0.177 0.823 18 C -0.125 4.125 19 H 0.159 0.841 20 C -0.134 4.134 21 C -0.242 4.242 22 C 0.270 3.730 23 O -0.293 6.293 24 C -0.235 4.235 25 H 0.156 0.844 26 C -0.185 4.185 27 C 0.022 3.978 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.519 -18.495 8.181 20.280 hybrid contribution 0.570 0.774 -0.089 0.965 sum -0.949 -17.721 8.092 19.504 Atomic orbital electron populations 1.69982 1.05338 1.25855 1.53437 1.25148 0.95330 0.98557 1.00142 0.86341 0.78912 0.83103 0.78207 1.20775 1.21554 1.20885 1.19122 0.91819 0.84299 1.43630 0.91709 1.44059 1.36610 1.02826 1.47880 1.20763 0.89235 0.96933 0.88002 1.22486 1.01457 0.92962 1.00690 1.23026 0.99233 0.86003 0.87379 1.86637 1.76373 1.17119 1.46972 1.22351 0.74186 0.83714 0.87023 1.90695 1.40830 1.82850 1.24447 1.22477 0.99817 0.97463 0.92863 0.82337 1.23923 0.92123 0.96884 0.99565 0.84098 1.22016 0.94490 0.93058 1.03794 1.23422 1.03548 0.98944 0.98278 1.24284 0.83176 0.78964 0.86565 1.90432 1.68096 1.34254 1.36552 1.23886 1.01960 1.01599 0.96009 0.84438 1.22470 0.97173 1.00048 0.98846 1.20867 0.98357 0.86414 0.92139 0.93408 0.95894 0.88901 0.92466 0.91354 0.90270 0.89177 0.88824 0.88022 0.87214 0.91283 0.92616 0.96040 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.29 55.49 0.63 -25.37 16 2 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 3 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -7.08 9.56 -15.06 -0.14 -7.23 16 8 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 9 N -0.59 -14.83 2.98 -172.32 -0.51 -15.34 16 10 C 0.18 4.21 5.26 -3.71 -0.02 4.19 16 11 C -0.14 -2.71 5.74 -26.61 -0.15 -2.86 16 12 C 0.10 1.77 2.39 -26.69 -0.06 1.71 16 13 O -0.35 -5.77 9.46 -39.26 -0.37 -6.14 16 14 C 0.48 6.81 4.11 36.01 0.15 6.96 16 15 O -0.50 -8.06 15.28 -18.75 -0.29 -8.34 16 16 C -0.11 -1.04 6.38 -89.64 -0.57 -1.61 16 17 H 0.16 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.11 -0.79 7.22 -87.25 -0.63 -1.42 16 19 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.10 -0.80 6.28 -24.98 -0.16 -0.95 16 21 C -0.20 -2.32 6.13 -25.99 -0.16 -2.48 16 22 C 0.40 4.98 7.43 -27.59 -0.21 4.78 16 23 O -0.42 -6.72 17.99 6.00 0.11 -6.61 16 24 C -0.22 -2.01 6.80 -90.76 -0.62 -2.62 16 25 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.15 -2.69 5.71 -26.62 -0.15 -2.84 16 27 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.09 2.45 6.24 -51.93 -0.32 2.13 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.50 7.16 -51.93 -0.37 1.13 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.11 1.51 4.47 -51.93 -0.23 1.28 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -31.87 332.06 -9.26 -41.13 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.96 Total: 0.25 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.84 Total: -1.11 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.11 Total: -40.71 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.55 Total: -21.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.87 -9.26 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342969788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.282 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds