Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48506 * 109.46977 * 240.00029 * 3 2 1 5 5 H 1.48498 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47349 * 120.00130 * 3 2 1 7 7 C 1.38811 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00820 * 165.40567 * 7 2 1 9 9 N 1.36944 * 119.99738 * 345.40512 * 7 2 1 10 10 C 1.46927 * 120.62920 * 328.67013 * 9 7 2 11 11 C 1.53185 * 108.77567 * 233.58682 * 10 9 7 12 12 C 1.53043 * 109.31196 * 305.36563 * 11 10 9 13 13 O 1.45204 * 109.45799 * 181.38782 * 12 11 10 14 14 C 1.34229 * 116.99847 * 149.97458 * 13 12 11 15 15 O 1.20829 * 120.00045 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99911 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.51109 * 273.91426 * 16 14 13 18 18 C 1.56976 * 117.18740 * 127.33397 * 16 14 13 19 19 H 1.08998 * 120.94072 * 142.01489 * 18 16 14 20 20 C 1.54416 * 118.12498 * 345.11341 * 18 16 14 21 21 C 1.54912 * 103.66384 * 320.27131 * 20 18 16 22 22 C 1.52482 * 102.93954 * 322.18384 * 21 20 18 23 23 O 1.20758 * 127.57739 * 218.29584 * 22 21 20 24 24 C 1.51833 * 104.84786 * 38.32623 * 22 21 20 25 25 H 1.08998 * 117.25632 * 196.48711 * 24 22 21 26 26 C 1.53034 * 109.52532 * 61.37277 * 12 11 10 27 27 C 1.46922 * 120.63382 * 148.64556 * 9 7 2 28 28 H 0.97000 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.58305 * 113.79608 * 10 9 7 30 30 H 1.09006 * 109.70368 * 353.44591 * 10 9 7 31 31 H 1.08998 * 109.49710 * 185.41479 * 11 10 9 32 32 H 1.09001 * 109.49772 * 65.31935 * 11 10 9 33 33 H 1.09004 * 109.45752 * 301.35560 * 12 11 10 34 34 H 1.09006 * 110.58733 * 201.73165 * 20 18 16 35 35 H 1.08996 * 110.59359 * 78.82006 * 20 18 16 36 36 H 1.08993 * 110.72172 * 203.81624 * 21 20 18 37 37 H 1.09003 * 110.87043 * 80.61411 * 21 20 18 38 38 H 1.08994 * 109.50152 * 58.58161 * 26 12 11 39 39 H 1.09008 * 109.49707 * 178.67774 * 26 12 11 40 40 H 1.08994 * 109.59094 * 246.20423 * 27 9 7 41 41 H 1.09004 * 109.58198 * 6.48753 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2171 -0.2362 9 7 1.3588 -2.3691 0.2978 10 6 0.2259 -2.3759 1.2334 11 6 0.4975 -3.4115 2.3290 12 6 0.7870 -4.7681 1.6825 13 8 1.0125 -5.7596 2.7191 14 6 0.6733 -7.0268 2.4345 15 8 0.2031 -7.2984 1.3551 16 6 0.8780 -8.1104 3.4616 17 1 1.8685 -8.5652 3.4732 18 6 -0.3584 -9.0138 3.8071 19 1 -0.2379 -10.0807 3.9949 20 6 -1.7571 -8.5350 3.3612 21 6 -1.7220 -7.0085 3.6231 22 6 -0.9294 -6.9029 4.9214 23 8 -1.1223 -6.1462 5.8425 24 6 0.1562 -7.9577 4.8014 25 1 0.6699 -8.2517 5.7167 26 6 2.0333 -4.6592 0.8012 27 6 1.7790 -3.6380 -0.3120 28 1 -0.4850 0.8400 0.0004 29 1 -0.6872 -2.6394 0.6995 30 1 0.1145 -1.3890 1.6828 31 1 -0.3765 -3.4954 2.9749 32 1 1.3585 -3.0988 2.9198 33 1 -0.0646 -5.0685 1.0719 34 1 -2.5339 -9.0089 3.9614 35 1 -1.9123 -8.7386 2.3018 36 1 -2.7305 -6.6164 3.7539 37 1 -1.2090 -6.4876 2.8146 38 1 2.8797 -4.3348 1.4065 39 1 2.2527 -5.6314 0.3596 40 1 0.9926 -4.0045 -0.9717 41 1 2.6935 -3.4831 -0.8845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342969788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -83.303136 kcal Electronic energy + Delta-G solvation = -24361.146840 eV Core-core repulsion = 20821.234011 eV Total energy + Delta-G solvation = -3539.912829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58238 -40.78339 -39.24690 -38.28713 -37.25507 -34.62295 -32.51099 -32.10310 -31.52105 -27.74833 -27.44297 -26.36082 -24.14659 -23.82445 -22.30373 -21.19394 -20.82822 -20.42263 -18.88780 -18.68684 -18.19035 -17.41655 -16.93259 -16.63175 -16.12663 -15.81697 -15.53715 -15.46951 -15.26263 -14.97470 -14.59197 -14.36216 -14.32689 -14.13057 -13.41510 -13.31354 -13.08663 -12.78197 -12.71251 -12.62768 -12.53979 -12.43109 -12.20998 -12.03273 -11.95495 -11.83170 -11.48135 -11.37266 -11.23647 -11.10615 -10.59768 -10.55809 -8.74519 -7.93198 -5.43335 0.56483 1.07333 1.45721 1.47784 1.50620 1.56041 2.39031 2.48359 2.88749 3.22923 3.24116 3.28990 3.43493 3.55253 3.71380 3.75539 3.80611 3.92579 4.02278 4.09028 4.22642 4.31206 4.44656 4.51406 4.67005 4.68171 4.79373 4.80530 4.82462 4.87141 4.90403 4.99244 5.00399 5.06664 5.18394 5.33054 5.44116 5.59233 5.62646 6.28750 6.34856 6.64074 7.08516 7.75757 8.30550 9.14409 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.003851 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541018 B = 7268.380510 C = 7676.027260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.044 4.044 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.272 4.272 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.185 3.815 11 C -0.123 4.123 12 C 0.107 3.893 13 O -0.360 6.360 14 C 0.480 3.520 15 O -0.523 6.523 16 C -0.116 4.116 17 H 0.196 0.804 18 C -0.076 4.076 19 H 0.189 0.811 20 C -0.096 4.096 21 C -0.215 4.215 22 C 0.389 3.611 23 O -0.468 6.468 24 C -0.219 4.219 25 H 0.163 0.837 26 C -0.132 4.132 27 C 0.146 3.854 28 H 0.252 0.748 29 H 0.003 0.997 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -21.846 8.851 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.402 4.402 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.059 3.941 11 C -0.162 4.162 12 C 0.052 3.948 13 O -0.277 6.277 14 C 0.325 3.675 15 O -0.412 6.412 16 C -0.135 4.135 17 H 0.213 0.787 18 C -0.093 4.093 19 H 0.206 0.794 20 C -0.133 4.133 21 C -0.252 4.252 22 C 0.265 3.735 23 O -0.342 6.342 24 C -0.238 4.238 25 H 0.180 0.820 26 C -0.171 4.171 27 C 0.020 3.980 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.213 -21.337 8.988 23.154 hybrid contribution 0.098 1.581 -0.390 1.632 sum -0.115 -19.755 8.598 21.546 Atomic orbital electron populations 1.70140 1.06799 1.26241 1.54786 1.25924 0.96081 1.01729 1.00267 0.85304 0.77574 0.78852 0.78466 1.19843 1.21931 1.20295 1.19479 0.92247 0.85404 1.43076 0.91335 1.44299 1.36649 1.03610 1.48686 1.20495 0.88463 0.96551 0.88597 1.22178 1.01653 0.93172 0.99216 1.22603 0.98797 0.85870 0.87504 1.86631 1.76874 1.18203 1.45986 1.23313 0.72988 0.83343 0.87873 1.90685 1.41760 1.82873 1.25911 1.22822 1.02737 0.96624 0.91276 0.78689 1.24280 0.90202 0.98531 0.96293 0.79434 1.22136 0.96353 0.90541 1.04268 1.23492 1.03172 1.01487 0.97090 1.24834 0.83998 0.78721 0.85931 1.90409 1.69455 1.36168 1.38122 1.23878 1.01582 1.01167 0.97146 0.81987 1.22271 0.97064 0.99926 0.97820 1.20977 0.98239 0.85627 0.93112 0.93871 0.97910 0.91958 0.91555 0.91738 0.91345 0.86358 0.89129 0.88124 0.89773 0.91222 0.90594 0.96613 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 11.29 21.65 0.24 -55.34 16 2 C -0.04 -2.47 4.95 84.86 0.42 -2.05 16 3 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.27 -15.09 9.56 84.03 0.80 -14.29 16 8 H 0.07 3.67 7.87 -2.91 -0.02 3.65 16 9 N -0.61 -31.25 2.98 -699.10 -2.08 -33.34 16 10 C 0.19 9.20 5.26 86.36 0.45 9.65 16 11 C -0.12 -5.00 5.74 30.67 0.18 -4.82 16 12 C 0.11 3.89 2.39 30.62 0.07 3.97 16 13 O -0.36 -11.41 9.46 -51.41 -0.49 -11.90 16 14 C 0.48 12.66 4.11 71.24 0.29 12.95 16 15 O -0.52 -16.20 15.28 21.95 0.34 -15.86 16 16 C -0.12 -1.80 6.38 -10.16 -0.06 -1.87 16 17 H 0.20 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.08 -0.77 7.22 -8.61 -0.06 -0.83 16 19 H 0.19 0.29 8.14 -2.39 -0.02 0.27 16 20 C -0.10 -1.30 6.28 31.73 0.20 -1.10 16 21 C -0.21 -4.74 6.13 31.08 0.19 -4.55 16 22 C 0.39 9.38 7.43 30.04 0.22 9.60 16 23 O -0.47 -15.00 17.99 -1.45 -0.03 -15.02 16 24 C -0.22 -3.33 6.80 -10.89 -0.07 -3.40 16 25 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 26 C -0.13 -4.75 5.71 30.67 0.18 -4.57 16 27 C 0.15 6.26 6.52 86.36 0.56 6.82 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.06 3.46 6.24 -2.38 -0.01 3.44 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.65 7.16 -2.38 -0.02 2.64 16 34 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.34 4.47 -2.39 -0.01 2.33 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 2.78 7.93 -2.38 -0.02 2.76 16 Total: -1.00 -72.11 332.06 4.42 -67.70 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.03 Total: 11.35 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 3.37 Total: 5.52 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -1.84 Total: -88.67 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.18 Total: -42.78 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.11 4.42 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342969788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds