Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00325 * 2 1 4 4 H 1.48497 * 109.46936 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47161 * 119.99806 * 3 2 1 6 6 H 1.48493 * 109.47598 * 240.00261 * 3 2 1 7 7 C 1.38817 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99809 * 154.26674 * 7 2 1 9 9 N 1.36928 * 120.00180 * 334.26983 * 7 2 1 10 10 C 1.46926 * 120.62819 * 333.69104 * 9 7 2 11 11 C 1.52766 * 109.00670 * 233.58336 * 10 9 7 12 12 C 1.53038 * 109.38434 * 305.58738 * 11 10 9 13 13 O 1.45192 * 109.45901 * 181.26013 * 12 11 10 14 14 C 1.34233 * 117.00220 * 89.93076 * 13 12 11 15 15 O 1.20831 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00272 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.52603 * 325.58805 * 16 14 13 18 18 C 1.52954 * 117.45874 * 111.07686 * 16 14 13 19 19 H 1.09002 * 119.09313 * 356.61094 * 18 16 14 20 20 C 1.54418 * 116.82136 * 200.64968 * 18 16 14 21 21 O 1.20757 * 127.16957 * 139.95720 * 20 18 16 22 22 C 1.52489 * 105.25472 * 319.67907 * 20 18 16 23 23 C 1.54911 * 102.94008 * 321.98433 * 22 20 18 24 24 C 1.53048 * 117.45851 * 180.09630 * 16 14 13 25 25 H 1.08997 * 119.43157 * 3.92092 * 24 16 14 26 26 C 1.53040 * 109.53828 * 61.23830 * 12 11 10 27 27 C 1.46922 * 120.63248 * 153.97138 * 9 7 2 28 28 H 0.96999 * 120.00350 * 174.07415 * 1 2 3 29 29 H 1.08998 * 109.58921 * 353.41824 * 10 9 7 30 30 H 1.08997 * 109.59176 * 113.84753 * 10 9 7 31 31 H 1.09000 * 109.56528 * 185.55043 * 11 10 9 32 32 H 1.09000 * 109.38482 * 65.51703 * 11 10 9 33 33 H 1.09000 * 109.46107 * 301.21929 * 12 11 10 34 34 H 1.08991 * 110.72207 * 203.62015 * 22 20 18 35 35 H 1.09003 * 110.71998 * 80.34462 * 22 20 18 36 36 H 1.08993 * 110.58211 * 279.27739 * 23 22 20 37 37 H 1.08998 * 110.71514 * 156.42448 * 23 22 20 38 38 H 1.08992 * 109.49801 * 178.68093 * 26 12 11 39 39 H 1.09003 * 109.51855 * 58.59885 * 26 12 11 40 40 H 1.09004 * 109.58231 * 246.15382 * 27 9 7 41 41 H 1.08997 * 109.58989 * 6.57723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0099 -1.2484 -0.4067 9 7 1.4274 -2.3295 0.5138 10 6 0.3867 -2.2297 1.5460 11 6 0.7855 -3.0953 2.7399 12 6 1.0628 -4.5226 2.2624 13 8 1.4131 -5.3538 3.4002 14 6 0.4064 -5.9772 4.0324 15 8 -0.7299 -5.8333 3.6475 16 6 0.6934 -6.8573 5.2216 17 1 1.6335 -7.4076 5.1827 18 6 0.2177 -6.3697 6.5911 19 1 -0.2557 -5.3911 6.6701 20 6 0.9103 -6.9822 7.8279 21 8 1.2372 -6.4093 8.8394 22 6 1.0844 -8.4610 7.4990 23 6 -0.2230 -8.8043 6.7424 24 6 -0.4975 -7.5416 5.8969 25 1 -1.4934 -7.4288 5.4687 26 6 2.2217 -4.5118 1.2629 27 6 1.8352 -3.6620 0.0483 28 1 -0.4850 -0.8355 -0.0867 29 1 0.2872 -1.1924 1.8656 30 1 -0.5626 -2.5828 1.1433 31 1 -0.0244 -3.1066 3.4693 32 1 1.6840 -2.6846 3.2004 33 1 0.1714 -4.9240 1.7805 34 1 1.1685 -9.0516 8.4112 35 1 1.9525 -8.6139 6.8579 36 1 -1.0376 -8.9796 7.4450 37 1 -0.0796 -9.6725 6.0992 38 1 2.4340 -5.5312 0.9410 39 1 3.1072 -4.0878 1.7365 40 1 1.0064 -4.1342 -0.4792 41 1 2.6912 -3.5695 -0.6202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342969790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -75.525026 kcal Electronic energy + Delta-G solvation = -23461.263273 eV Core-core repulsion = 19921.687729 eV Total energy + Delta-G solvation = -3539.575545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30587 -40.04674 -38.16058 -37.35594 -35.99436 -32.98436 -31.85373 -30.49113 -29.61662 -26.89401 -26.13742 -24.68302 -22.63617 -22.20727 -21.18196 -20.17023 -19.56540 -19.35139 -18.13491 -17.57519 -16.82877 -16.12059 -16.06414 -15.57348 -14.85898 -14.66839 -14.30905 -14.10328 -13.82671 -13.54387 -13.47053 -13.24496 -12.90280 -12.84709 -12.60383 -12.15988 -11.90554 -11.83882 -11.57041 -11.00965 -10.99600 -10.87844 -10.71730 -10.71140 -10.51817 -10.41934 -10.16846 -10.01705 -9.82670 -9.65377 -9.36746 -8.41973 -6.99103 -6.12308 -3.26945 1.24445 2.07258 2.47664 3.21942 3.48386 3.52367 3.56463 3.70213 3.92300 3.99854 4.17617 4.47024 4.55919 4.57150 4.68540 4.76733 4.92815 5.05929 5.22105 5.24945 5.25967 5.31035 5.42298 5.45213 5.48563 5.55709 5.60318 5.83162 6.03354 6.10665 6.24796 6.30912 6.38531 6.54488 6.67484 6.73184 6.97818 7.00468 7.10641 7.77293 7.93912 8.51622 9.04392 9.78838 10.21286 11.17072 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.003134 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.117528 B = 8931.887141 C = 9286.578526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.353 4.353 8 H 0.059 0.941 9 N -0.599 5.599 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.099 3.901 13 O -0.350 6.350 14 C 0.490 3.510 15 O -0.502 6.502 16 C -0.114 4.114 17 H 0.140 0.860 18 C -0.207 4.207 19 H 0.138 0.862 20 C 0.398 3.602 21 O -0.427 6.427 22 C -0.184 4.184 23 C -0.090 4.090 24 C -0.112 4.112 25 H 0.139 0.861 26 C -0.128 4.128 27 C 0.151 3.849 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -19.199 12.184 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.482 4.482 8 H 0.077 0.923 9 N -0.323 5.323 10 C 0.027 3.973 11 C -0.188 4.188 12 C 0.045 3.955 13 O -0.266 6.266 14 C 0.332 3.668 15 O -0.389 6.389 16 C -0.133 4.133 17 H 0.157 0.843 18 C -0.227 4.227 19 H 0.155 0.845 20 C 0.271 3.729 21 O -0.297 6.297 22 C -0.222 4.222 23 C -0.127 4.127 24 C -0.130 4.130 25 H 0.157 0.843 26 C -0.168 4.168 27 C 0.024 3.976 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.906 -17.124 12.630 21.297 hybrid contribution 0.115 -1.594 -0.272 1.622 sum 1.021 -18.718 12.358 22.453 Atomic orbital electron populations 1.70788 1.06640 1.30370 1.47569 1.25868 0.96476 1.01513 0.98694 0.83539 0.74832 0.76016 0.76249 1.21050 1.21993 1.21916 1.19986 0.98116 0.88566 1.41544 0.92305 1.44191 1.45178 1.01218 1.41729 1.20863 0.90427 0.99405 0.86606 1.22471 1.01645 0.94105 1.00609 1.22955 0.99441 0.89616 0.83468 1.86516 1.38513 1.57478 1.44110 1.22130 0.83609 0.77950 0.83086 1.90677 1.22887 1.60545 1.64841 1.21580 1.01930 1.00953 0.88825 0.84277 1.24366 1.05598 1.01641 0.91063 0.84458 1.25034 0.72208 0.90559 0.85120 1.90445 1.40040 1.70366 1.28866 1.23103 1.00478 0.95270 1.03342 1.21998 0.96588 0.96507 0.97645 1.23317 0.97766 0.92957 0.98930 0.84337 1.22235 0.97457 1.00377 0.96701 1.20875 0.98092 0.86177 0.92458 0.91987 0.89374 0.96149 0.92553 0.91244 0.90202 0.88208 0.87016 0.89137 0.89157 0.92037 0.90935 0.96204 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 12.36 55.49 0.69 -26.64 16 2 C -0.02 -0.66 4.68 -17.43 -0.08 -0.74 16 3 Si 1.06 25.11 29.99 -169.99 -5.10 20.01 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.35 -9.79 9.50 -15.06 -0.14 -9.93 16 8 H 0.06 1.62 7.94 -52.49 -0.42 1.20 16 9 N -0.60 -14.98 2.87 -172.59 -0.50 -15.48 16 10 C 0.15 3.65 4.66 -3.93 -0.02 3.63 16 11 C -0.15 -2.99 5.70 -26.83 -0.15 -3.14 16 12 C 0.10 1.78 2.42 -26.69 -0.06 1.72 16 13 O -0.35 -5.61 9.88 -39.26 -0.39 -6.00 16 14 C 0.49 7.05 7.71 36.01 0.28 7.33 16 15 O -0.50 -8.52 15.55 -18.75 -0.29 -8.81 16 16 C -0.11 -1.11 5.58 -91.77 -0.51 -1.62 16 17 H 0.14 1.01 7.13 -51.93 -0.37 0.64 16 18 C -0.21 -1.99 6.88 -89.47 -0.62 -2.61 16 19 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 20 C 0.40 3.70 7.90 -26.25 -0.21 3.49 16 21 O -0.43 -5.55 17.99 6.00 0.11 -5.44 16 22 C -0.18 -0.97 6.33 -25.98 -0.16 -1.14 16 23 C -0.09 -0.42 6.81 -24.98 -0.17 -0.59 16 24 C -0.11 -0.87 6.50 -89.41 -0.58 -1.45 16 25 H 0.14 1.17 7.79 -51.93 -0.40 0.77 16 26 C -0.13 -2.25 5.74 -26.61 -0.15 -2.40 16 27 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 28 H 0.27 8.11 6.73 -40.82 -0.27 7.84 16 29 H 0.09 2.34 6.21 -51.93 -0.32 2.02 16 30 H 0.02 0.50 7.89 -51.93 -0.41 0.09 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.44 7.32 -51.93 -0.38 0.06 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -33.03 336.25 -8.98 -42.02 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.96 Total: -0.36 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.61 Total: -4.37 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.19 Total: -42.12 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.57 Total: -20.25 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.10 Total: 20.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.03 -8.98 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342969790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.509 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds