Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00325 * 2 1 4 4 H 1.48497 * 109.46936 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47161 * 119.99806 * 3 2 1 6 6 H 1.48493 * 109.47598 * 240.00261 * 3 2 1 7 7 C 1.38817 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99809 * 154.26674 * 7 2 1 9 9 N 1.36928 * 120.00180 * 334.26983 * 7 2 1 10 10 C 1.46926 * 120.62819 * 333.69104 * 9 7 2 11 11 C 1.52766 * 109.00670 * 233.58336 * 10 9 7 12 12 C 1.53038 * 109.38434 * 305.58738 * 11 10 9 13 13 O 1.45192 * 109.45901 * 181.26013 * 12 11 10 14 14 C 1.34233 * 117.00220 * 89.93076 * 13 12 11 15 15 O 1.20831 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00272 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.52603 * 325.58805 * 16 14 13 18 18 C 1.52954 * 117.45874 * 111.07686 * 16 14 13 19 19 H 1.09002 * 119.09313 * 356.61094 * 18 16 14 20 20 C 1.54418 * 116.82136 * 200.64968 * 18 16 14 21 21 O 1.20757 * 127.16957 * 139.95720 * 20 18 16 22 22 C 1.52489 * 105.25472 * 319.67907 * 20 18 16 23 23 C 1.54911 * 102.94008 * 321.98433 * 22 20 18 24 24 C 1.53048 * 117.45851 * 180.09630 * 16 14 13 25 25 H 1.08997 * 119.43157 * 3.92092 * 24 16 14 26 26 C 1.53040 * 109.53828 * 61.23830 * 12 11 10 27 27 C 1.46922 * 120.63248 * 153.97138 * 9 7 2 28 28 H 0.96999 * 120.00350 * 174.07415 * 1 2 3 29 29 H 1.08998 * 109.58921 * 353.41824 * 10 9 7 30 30 H 1.08997 * 109.59176 * 113.84753 * 10 9 7 31 31 H 1.09000 * 109.56528 * 185.55043 * 11 10 9 32 32 H 1.09000 * 109.38482 * 65.51703 * 11 10 9 33 33 H 1.09000 * 109.46107 * 301.21929 * 12 11 10 34 34 H 1.08991 * 110.72207 * 203.62015 * 22 20 18 35 35 H 1.09003 * 110.71998 * 80.34462 * 22 20 18 36 36 H 1.08993 * 110.58211 * 279.27739 * 23 22 20 37 37 H 1.08998 * 110.71514 * 156.42448 * 23 22 20 38 38 H 1.08992 * 109.49801 * 178.68093 * 26 12 11 39 39 H 1.09003 * 109.51855 * 58.59885 * 26 12 11 40 40 H 1.09004 * 109.58231 * 246.15382 * 27 9 7 41 41 H 1.08997 * 109.58989 * 6.57723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0099 -1.2484 -0.4067 9 7 1.4274 -2.3295 0.5138 10 6 0.3867 -2.2297 1.5460 11 6 0.7855 -3.0953 2.7399 12 6 1.0628 -4.5226 2.2624 13 8 1.4131 -5.3538 3.4002 14 6 0.4064 -5.9772 4.0324 15 8 -0.7299 -5.8333 3.6475 16 6 0.6934 -6.8573 5.2216 17 1 1.6335 -7.4076 5.1827 18 6 0.2177 -6.3697 6.5911 19 1 -0.2557 -5.3911 6.6701 20 6 0.9103 -6.9822 7.8279 21 8 1.2372 -6.4093 8.8394 22 6 1.0844 -8.4610 7.4990 23 6 -0.2230 -8.8043 6.7424 24 6 -0.4975 -7.5416 5.8969 25 1 -1.4934 -7.4288 5.4687 26 6 2.2217 -4.5118 1.2629 27 6 1.8352 -3.6620 0.0483 28 1 -0.4850 -0.8355 -0.0867 29 1 0.2872 -1.1924 1.8656 30 1 -0.5626 -2.5828 1.1433 31 1 -0.0244 -3.1066 3.4693 32 1 1.6840 -2.6846 3.2004 33 1 0.1714 -4.9240 1.7805 34 1 1.1685 -9.0516 8.4112 35 1 1.9525 -8.6139 6.8579 36 1 -1.0376 -8.9796 7.4450 37 1 -0.0796 -9.6725 6.0992 38 1 2.4340 -5.5312 0.9410 39 1 3.1072 -4.0878 1.7365 40 1 1.0064 -4.1342 -0.4792 41 1 2.6912 -3.5695 -0.6202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342969790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -94.435405 kcal Electronic energy + Delta-G solvation = -23462.083289 eV Core-core repulsion = 19921.687729 eV Total energy + Delta-G solvation = -3540.395560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.25000 -41.08842 -39.45740 -38.53633 -37.40591 -34.85185 -32.54008 -32.17388 -31.43260 -27.49650 -27.46474 -26.23153 -24.23949 -23.83125 -22.26793 -21.16084 -20.85342 -20.25407 -19.56090 -19.20469 -18.01740 -17.20480 -16.86904 -16.60626 -16.25889 -15.98043 -15.67076 -15.43999 -15.28801 -15.22886 -14.62603 -14.45230 -14.31713 -14.13306 -13.61363 -13.37944 -13.19765 -12.66792 -12.64336 -12.52307 -12.49769 -12.37606 -12.18464 -11.93191 -11.88293 -11.83461 -11.67651 -11.44739 -11.28712 -11.22856 -10.51643 -10.50920 -9.05551 -8.32083 -5.44706 0.46086 1.04487 1.36907 1.57762 1.65459 1.84045 2.48166 2.62855 2.85422 3.14867 3.20855 3.33663 3.42492 3.44513 3.62043 3.69046 3.70124 3.99244 4.02321 4.08138 4.17429 4.18169 4.35820 4.47732 4.51417 4.59471 4.68558 4.72901 4.80272 4.90449 4.92632 4.99018 5.01613 5.05696 5.10065 5.14332 5.22465 5.44514 5.78962 6.32321 6.32511 6.55760 6.96498 7.69962 8.13726 8.95236 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.003134 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.117528 B = 8931.887141 C = 9286.578526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.077 4.077 3 Si 1.115 2.885 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.358 4.358 8 H 0.060 0.940 9 N -0.618 5.618 10 C 0.162 3.838 11 C -0.137 4.137 12 C 0.106 3.894 13 O -0.347 6.347 14 C 0.485 3.515 15 O -0.532 6.532 16 C -0.114 4.114 17 H 0.173 0.827 18 C -0.230 4.230 19 H 0.113 0.887 20 C 0.400 3.600 21 O -0.474 6.474 22 C -0.172 4.172 23 C -0.080 4.080 24 C -0.091 4.091 25 H 0.130 0.870 26 C -0.115 4.115 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -22.052 12.902 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.273 4.273 3 Si 0.939 3.061 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.078 0.922 9 N -0.343 5.343 10 C 0.036 3.964 11 C -0.176 4.176 12 C 0.052 3.948 13 O -0.263 6.263 14 C 0.329 3.671 15 O -0.421 6.421 16 C -0.132 4.132 17 H 0.190 0.810 18 C -0.249 4.249 19 H 0.131 0.869 20 C 0.277 3.723 21 O -0.348 6.348 22 C -0.209 4.209 23 C -0.117 4.117 24 C -0.109 4.109 25 H 0.148 0.852 26 C -0.153 4.153 27 C 0.020 3.980 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.499 -20.035 13.342 24.200 hybrid contribution -0.445 -0.760 -0.504 1.015 sum 2.054 -20.795 12.838 24.525 Atomic orbital electron populations 1.70907 1.07701 1.29414 1.50408 1.27239 0.96527 1.04968 0.98544 0.82862 0.73862 0.71956 0.77420 1.21957 1.20663 1.19751 1.20273 0.98096 0.89714 1.40656 0.92244 1.44429 1.45249 1.02356 1.42291 1.20611 0.89950 0.98090 0.87764 1.22248 1.01334 0.95226 0.98831 1.22631 0.99477 0.88389 0.84319 1.86526 1.39005 1.57279 1.43496 1.23076 0.82836 0.77541 0.83613 1.90670 1.24017 1.61605 1.65853 1.21684 1.04466 1.00645 0.86421 0.80960 1.24401 1.06997 1.01849 0.91677 0.86860 1.25585 0.70455 0.92521 0.83785 1.90431 1.42052 1.71825 1.30443 1.23180 1.01619 0.91516 1.04626 1.22106 0.96646 0.95423 0.97476 1.23493 0.96580 0.93697 0.97165 0.85225 1.22038 0.96677 1.01646 0.94981 1.21055 0.98229 0.84607 0.94120 0.93662 0.92807 0.97612 0.92355 0.91684 0.91059 0.86455 0.84677 0.87821 0.86354 0.88363 0.91115 0.95991 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 12.36 21.65 0.27 -58.01 16 2 C -0.08 -4.40 4.68 84.86 0.40 -4.00 16 3 Si 1.11 51.11 29.99 68.60 2.06 53.17 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.36 -20.05 9.50 84.04 0.80 -19.25 16 8 H 0.06 3.26 7.94 -2.91 -0.02 3.24 16 9 N -0.62 -31.39 2.87 -699.94 -2.01 -33.40 16 10 C 0.16 8.02 4.66 86.22 0.40 8.42 16 11 C -0.14 -5.60 5.70 30.53 0.17 -5.42 16 12 C 0.11 3.75 2.42 30.62 0.07 3.82 16 13 O -0.35 -10.57 9.88 -51.44 -0.51 -11.08 16 14 C 0.49 13.38 7.71 71.24 0.55 13.93 16 15 O -0.53 -17.96 15.55 21.95 0.34 -17.62 16 16 C -0.11 -1.95 5.58 -11.54 -0.06 -2.01 16 17 H 0.17 1.78 7.13 -2.39 -0.02 1.76 16 18 C -0.23 -4.20 6.88 -10.05 -0.07 -4.27 16 19 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 20 C 0.40 6.79 7.90 30.91 0.24 7.04 16 21 O -0.47 -12.19 17.99 -1.44 -0.03 -12.22 16 22 C -0.17 -1.09 6.33 31.08 0.20 -0.90 16 23 C -0.08 -0.39 6.81 31.73 0.22 -0.17 16 24 C -0.09 -1.19 6.50 -10.01 -0.07 -1.26 16 25 H 0.13 1.99 7.79 -2.39 -0.02 1.97 16 26 C -0.11 -3.79 5.74 30.67 0.18 -3.62 16 27 C 0.15 5.89 6.52 86.36 0.56 6.46 16 28 H 0.25 16.02 6.73 -92.71 -0.62 15.39 16 29 H 0.05 3.01 6.21 -2.39 -0.01 2.99 16 30 H 0.01 0.30 7.89 -2.39 -0.02 0.28 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.67 7.16 -2.39 -0.02 2.65 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.14 0.32 7.32 -2.39 -0.02 0.31 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 Total: -1.00 -75.06 336.25 4.89 -70.17 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.18 Total: 10.21 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 3.59 Total: -1.22 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -1.74 Total: -91.41 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.19 Total: -40.92 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.06 Total: 53.17 kcal Total: -75.06 4.89 -70.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342969790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.262 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds