Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 126.43667 * 2 1 4 4 O 1.33919 * 108.77900 * 179.97438 * 3 2 1 5 5 C 1.34938 * 109.38383 * 0.02562 * 4 3 2 6 6 C 1.46461 * 125.99657 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00225 * 180.02562 * 6 5 4 8 8 O 1.34904 * 120.00130 * 0.02562 * 6 5 4 9 9 C 1.45201 * 117.00023 * 179.97438 * 8 6 5 10 10 C 1.53081 * 109.44761 * 89.79164 * 9 8 6 11 11 C 1.53190 * 109.29209 * 181.24261 * 10 9 8 12 12 N 1.46921 * 108.89311 * 305.57883 * 11 10 9 13 13 C 1.36940 * 120.63187 * 233.51481 * 12 11 10 14 14 H 1.08001 * 120.00319 * 152.61971 * 13 12 11 15 15 C 1.38813 * 119.99903 * 332.62203 * 13 12 11 16 16 N 1.31624 * 120.00070 * 159.34992 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 339.35529 * 15 13 12 18 18 H 1.48494 * 109.47321 * 92.87851 * 17 15 13 19 19 H 1.48501 * 109.47194 * 212.88430 * 17 15 13 20 20 H 1.48509 * 109.46983 * 332.87654 * 17 15 13 21 21 C 1.46923 * 118.74178 * 53.54201 * 12 11 10 22 22 C 1.53035 * 109.46027 * 210.00161 * 9 8 6 23 23 C 1.36645 * 108.00663 * 0.25867 * 5 4 3 24 24 C 1.50699 * 126.64765 * 179.71808 * 23 5 4 25 25 H 1.08999 * 109.47105 * 90.02575 * 1 2 3 26 26 H 1.08996 * 109.46996 * 210.02093 * 1 2 3 27 27 H 1.08996 * 109.46920 * 330.02596 * 1 2 3 28 28 H 1.07997 * 125.60982 * 359.95390 * 3 2 1 29 29 H 1.08996 * 109.46004 * 329.98095 * 9 8 6 30 30 H 1.08992 * 109.38800 * 61.36680 * 10 9 8 31 31 H 1.09002 * 109.61927 * 301.25958 * 10 9 8 32 32 H 1.08999 * 109.58729 * 185.71870 * 11 10 9 33 33 H 1.09004 * 109.58886 * 65.43758 * 11 10 9 34 34 H 0.97001 * 119.99914 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.59094 * 66.17180 * 21 12 11 36 36 H 1.09001 * 109.59077 * 186.46452 * 21 12 11 37 37 H 1.09002 * 109.49848 * 58.66798 * 22 9 8 38 38 H 1.08999 * 109.49849 * 298.56607 * 22 9 8 39 39 H 1.09001 * 109.46951 * 90.02585 * 24 23 5 40 40 H 1.09004 * 109.46862 * 210.02520 * 24 23 5 41 41 H 1.08992 * 109.47396 * 330.02592 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0874 0.0000 4 8 3.5859 0.6812 0.0006 5 6 3.6266 -0.6676 0.0004 6 6 4.8369 -1.4923 0.0014 7 8 4.7464 -2.7051 0.0006 8 8 6.0522 -0.9067 0.0031 9 6 7.2077 -1.7860 0.0046 10 6 7.6121 -2.0986 -1.4383 11 6 8.8119 -3.0511 -1.4326 12 7 9.8828 -2.4624 -0.6170 13 6 11.1437 -2.3066 -1.1280 14 1 11.7853 -1.5229 -0.7531 15 6 11.5971 -3.1561 -2.1278 16 7 12.6010 -2.7906 -2.8967 17 14 10.7826 -4.8178 -2.3823 18 1 9.7110 -4.6927 -3.4027 19 1 11.7955 -5.7998 -2.8459 20 1 10.1938 -5.2819 -1.1004 21 6 9.5753 -2.0445 0.7576 22 6 8.3692 -1.1004 0.7278 23 6 2.3404 -1.1289 -0.0062 24 6 1.9020 -2.5707 -0.0148 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 1.9769 2.1148 -0.0007 29 1 6.9571 -2.7141 0.5183 30 1 7.8843 -1.1735 -1.9463 31 1 6.7773 -2.5680 -1.9589 32 1 9.1676 -3.1968 -2.4526 33 1 8.5150 -4.0104 -1.0087 34 1 12.9176 -3.3841 -3.5956 35 1 9.3388 -2.9205 1.3617 36 1 10.4356 -1.5282 1.1837 37 1 8.0708 -0.8591 1.7481 38 1 8.6367 -0.1850 0.2002 39 1 1.7924 -2.9232 1.0108 40 1 0.9467 -2.6569 -0.5327 41 1 2.6496 -3.1748 -0.5286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343364251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -53.112134 kcal Electronic energy + Delta-G solvation = -23662.580666 eV Core-core repulsion = 20123.977017 eV Total energy + Delta-G solvation = -3538.603649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.01751 -40.27833 -37.78357 -36.17114 -35.05593 -32.73810 -31.84392 -30.59329 -30.46508 -28.12439 -27.64071 -25.35157 -23.68525 -22.89617 -21.87313 -20.50942 -20.21519 -19.60172 -17.87014 -17.13636 -16.89828 -16.67483 -16.06186 -15.41492 -15.16547 -14.41001 -14.21530 -13.89246 -13.70558 -13.66487 -13.36191 -13.11323 -13.05654 -12.89507 -12.82384 -12.47371 -12.44118 -12.05329 -11.91363 -11.86664 -11.43324 -10.85810 -10.78243 -10.67395 -10.41650 -10.16480 -9.99367 -9.72942 -9.67827 -9.40933 -8.88595 -8.66269 -7.04527 -5.96957 -3.33877 0.68958 1.93707 2.26913 2.78556 2.96454 3.32146 3.48461 3.51451 4.33407 4.39283 4.51419 4.58528 4.84176 4.90242 5.01821 5.11048 5.17607 5.24387 5.34189 5.39395 5.43522 5.47854 5.51648 5.55971 5.73598 5.75095 5.81698 5.96904 6.05378 6.11103 6.14408 6.21328 6.31329 6.51480 6.57017 6.59146 6.63656 6.64038 6.89866 7.72337 7.92121 8.30377 8.89801 9.68840 10.05065 11.18708 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031974 B = 0.003432 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.508857 B = 8156.319129 C = 8532.037731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.199 4.199 3 C 0.003 3.997 4 O -0.146 6.146 5 C -0.063 4.063 6 C 0.548 3.452 7 O -0.487 6.487 8 O -0.344 6.344 9 C 0.098 3.902 10 C -0.149 4.149 11 C 0.130 3.870 12 N -0.606 5.606 13 C -0.263 4.263 14 H 0.088 0.912 15 C 0.024 3.976 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.269 1.269 21 C 0.152 3.848 22 C -0.130 4.130 23 C -0.076 4.076 24 C -0.098 4.098 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.212 0.788 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.371 6.102 7.120 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.200 4.200 3 C -0.068 4.068 4 O -0.040 6.040 5 C -0.114 4.114 6 C 0.392 3.608 7 O -0.377 6.377 8 O -0.260 6.260 9 C 0.045 3.955 10 C -0.188 4.188 11 C 0.004 3.996 12 N -0.330 5.330 13 C -0.391 4.391 14 H 0.105 0.895 15 C -0.175 4.175 16 N -0.549 5.549 17 Si 0.711 3.289 18 H -0.215 1.215 19 H -0.230 1.230 20 H -0.194 1.194 21 C 0.026 3.974 22 C -0.169 4.169 23 C -0.078 4.078 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.228 0.772 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.907 5.862 6.995 25.590 hybrid contribution -0.544 -0.926 -0.332 1.124 sum -24.451 4.936 6.663 25.819 Atomic orbital electron populations 1.20168 0.88389 1.02900 1.02380 1.20358 0.97746 0.91822 1.10098 1.24303 0.80051 1.00130 1.02294 1.84180 1.28751 1.21118 1.69998 1.20679 0.93188 0.80766 1.16722 1.19148 0.82680 0.85443 0.73483 1.90901 1.86839 1.13298 1.46617 1.86719 1.14337 1.42092 1.82880 1.22977 0.81421 0.92692 0.98439 1.22506 0.99409 1.02173 0.94732 1.21333 0.87534 0.93688 0.97044 1.44430 1.07082 1.72781 1.08663 1.18925 0.89798 1.11973 1.18375 0.89461 1.25282 0.96369 0.98140 0.97675 1.69838 1.28923 1.36560 1.19571 0.86988 0.77727 0.86061 0.78167 1.21525 1.22984 1.19443 1.20916 0.94670 0.95047 0.86803 1.22235 0.94323 1.00968 0.99371 1.20525 0.90243 0.97661 0.99353 1.20473 1.02211 0.89620 1.03106 0.91221 0.91228 0.91328 0.77168 0.89950 0.90559 0.92173 0.90267 0.95256 0.92694 0.95535 0.90733 0.91667 0.90535 0.90508 0.91130 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.16 36.01 0.37 -0.11 16 2 C -0.20 -1.82 6.14 -104.93 -0.64 -2.47 16 3 C 0.00 0.02 12.00 29.64 0.36 0.38 16 4 O -0.15 -1.86 10.67 4.72 0.05 -1.81 16 5 C -0.06 -0.89 7.18 -36.85 -0.26 -1.15 16 6 C 0.55 8.90 7.90 34.04 0.27 9.17 16 7 O -0.49 -8.47 14.00 -19.36 -0.27 -8.74 16 8 O -0.34 -5.89 9.89 -42.50 -0.42 -6.32 16 9 C 0.10 1.75 2.42 -26.67 -0.06 1.69 16 10 C -0.15 -2.89 5.73 -26.59 -0.15 -3.04 16 11 C 0.13 2.93 4.20 -3.71 -0.02 2.91 16 12 N -0.61 -14.53 2.77 -172.32 -0.48 -15.01 16 13 C -0.26 -7.34 10.03 -15.06 -0.15 -7.50 16 14 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 15 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 16 N -0.91 -27.84 13.97 55.49 0.78 -27.07 16 17 Si 0.88 22.55 24.34 -169.99 -4.14 18.41 16 18 H -0.29 -7.13 6.62 56.52 0.37 -6.76 16 19 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 20 H -0.27 -6.79 6.64 56.52 0.38 -6.41 16 21 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 22 C -0.13 -2.22 5.75 -26.61 -0.15 -2.37 16 23 C -0.08 -0.89 6.20 -104.42 -0.65 -1.54 16 24 C -0.10 -0.99 9.58 36.01 0.34 -0.65 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.08 1.49 7.16 -51.93 -0.37 1.11 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.94 4.50 -51.93 -0.23 1.70 16 33 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 41 H 0.09 1.06 6.45 -51.93 -0.34 0.72 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -32.59 333.85 -6.30 -38.89 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.97 Total: -2.29 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.87 Total: -1.10 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.30 Total: -42.08 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.64 Total: -16.86 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.59 -6.30 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343364251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.224 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds