Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 126.43667 * 2 1 4 4 O 1.33919 * 108.77900 * 179.97438 * 3 2 1 5 5 C 1.34938 * 109.38383 * 0.02562 * 4 3 2 6 6 C 1.46461 * 125.99657 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00225 * 180.02562 * 6 5 4 8 8 O 1.34904 * 120.00130 * 0.02562 * 6 5 4 9 9 C 1.45201 * 117.00023 * 179.97438 * 8 6 5 10 10 C 1.53081 * 109.44761 * 89.79164 * 9 8 6 11 11 C 1.53190 * 109.29209 * 181.24261 * 10 9 8 12 12 N 1.46921 * 108.89311 * 305.57883 * 11 10 9 13 13 C 1.36940 * 120.63187 * 233.51481 * 12 11 10 14 14 H 1.08001 * 120.00319 * 152.61971 * 13 12 11 15 15 C 1.38813 * 119.99903 * 332.62203 * 13 12 11 16 16 N 1.31624 * 120.00070 * 159.34992 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 339.35529 * 15 13 12 18 18 H 1.48494 * 109.47321 * 92.87851 * 17 15 13 19 19 H 1.48501 * 109.47194 * 212.88430 * 17 15 13 20 20 H 1.48509 * 109.46983 * 332.87654 * 17 15 13 21 21 C 1.46923 * 118.74178 * 53.54201 * 12 11 10 22 22 C 1.53035 * 109.46027 * 210.00161 * 9 8 6 23 23 C 1.36645 * 108.00663 * 0.25867 * 5 4 3 24 24 C 1.50699 * 126.64765 * 179.71808 * 23 5 4 25 25 H 1.08999 * 109.47105 * 90.02575 * 1 2 3 26 26 H 1.08996 * 109.46996 * 210.02093 * 1 2 3 27 27 H 1.08996 * 109.46920 * 330.02596 * 1 2 3 28 28 H 1.07997 * 125.60982 * 359.95390 * 3 2 1 29 29 H 1.08996 * 109.46004 * 329.98095 * 9 8 6 30 30 H 1.08992 * 109.38800 * 61.36680 * 10 9 8 31 31 H 1.09002 * 109.61927 * 301.25958 * 10 9 8 32 32 H 1.08999 * 109.58729 * 185.71870 * 11 10 9 33 33 H 1.09004 * 109.58886 * 65.43758 * 11 10 9 34 34 H 0.97001 * 119.99914 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.59094 * 66.17180 * 21 12 11 36 36 H 1.09001 * 109.59077 * 186.46452 * 21 12 11 37 37 H 1.09002 * 109.49848 * 58.66798 * 22 9 8 38 38 H 1.08999 * 109.49849 * 298.56607 * 22 9 8 39 39 H 1.09001 * 109.46951 * 90.02585 * 24 23 5 40 40 H 1.09004 * 109.46862 * 210.02520 * 24 23 5 41 41 H 1.08992 * 109.47396 * 330.02592 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0874 0.0000 4 8 3.5859 0.6812 0.0006 5 6 3.6266 -0.6676 0.0004 6 6 4.8369 -1.4923 0.0014 7 8 4.7464 -2.7051 0.0006 8 8 6.0522 -0.9067 0.0031 9 6 7.2077 -1.7860 0.0046 10 6 7.6121 -2.0986 -1.4383 11 6 8.8119 -3.0511 -1.4326 12 7 9.8828 -2.4624 -0.6170 13 6 11.1437 -2.3066 -1.1280 14 1 11.7853 -1.5229 -0.7531 15 6 11.5971 -3.1561 -2.1278 16 7 12.6010 -2.7906 -2.8967 17 14 10.7826 -4.8178 -2.3823 18 1 9.7110 -4.6927 -3.4027 19 1 11.7955 -5.7998 -2.8459 20 1 10.1938 -5.2819 -1.1004 21 6 9.5753 -2.0445 0.7576 22 6 8.3692 -1.1004 0.7278 23 6 2.3404 -1.1289 -0.0062 24 6 1.9020 -2.5707 -0.0148 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 1.9769 2.1148 -0.0007 29 1 6.9571 -2.7141 0.5183 30 1 7.8843 -1.1735 -1.9463 31 1 6.7773 -2.5680 -1.9589 32 1 9.1676 -3.1968 -2.4526 33 1 8.5150 -4.0104 -1.0087 34 1 12.9176 -3.3841 -3.5956 35 1 9.3388 -2.9205 1.3617 36 1 10.4356 -1.5282 1.1837 37 1 8.0708 -0.8591 1.7481 38 1 8.6367 -0.1850 0.2002 39 1 1.7924 -2.9232 1.0108 40 1 0.9467 -2.6569 -0.5327 41 1 2.6496 -3.1748 -0.5286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343364251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -72.935319 kcal Electronic energy + Delta-G solvation = -23663.440264 eV Core-core repulsion = 20123.977017 eV Total energy + Delta-G solvation = -3539.463246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.84966 -41.56675 -39.34674 -37.57021 -35.86669 -34.66586 -32.77301 -32.29565 -32.11775 -29.07058 -28.23077 -27.07134 -24.96865 -24.54485 -23.43894 -21.41949 -21.33779 -21.08319 -18.99935 -18.87637 -18.16387 -17.75943 -17.25591 -16.83287 -16.62193 -16.02124 -15.50970 -15.29128 -15.08140 -14.86407 -14.49300 -14.31071 -14.29199 -13.99150 -13.74986 -13.69000 -13.56809 -13.55008 -13.17606 -12.99762 -12.61671 -12.56014 -12.39321 -12.20870 -12.09959 -11.83167 -11.64786 -11.54167 -11.19101 -10.76217 -10.44989 -9.69428 -9.04623 -8.19820 -5.53185 -0.27950 1.19487 1.22434 1.27845 1.38967 1.47729 1.69779 1.99979 2.38401 2.98128 3.25480 3.51518 3.60921 3.63694 3.69933 3.79656 4.00347 4.14702 4.17198 4.32942 4.34622 4.52470 4.54160 4.65536 4.68053 4.71414 4.78213 4.84123 4.89059 4.93801 4.98068 4.98919 5.02932 5.05384 5.09916 5.24295 5.41224 5.49809 5.82079 5.82423 6.09802 6.50989 6.84532 7.55701 7.96098 8.99620 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031974 B = 0.003432 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.508857 B = 8156.319129 C = 8532.037731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.208 4.208 3 C 0.021 3.979 4 O -0.166 6.166 5 C -0.110 4.110 6 C 0.545 3.455 7 O -0.508 6.508 8 O -0.348 6.348 9 C 0.103 3.897 10 C -0.140 4.140 11 C 0.128 3.872 12 N -0.620 5.620 13 C -0.250 4.250 14 H 0.060 0.940 15 C -0.032 4.032 16 N -0.953 5.953 17 Si 0.940 3.060 18 H -0.277 1.277 19 H -0.307 1.307 20 H -0.260 1.260 21 C 0.147 3.853 22 C -0.119 4.119 23 C -0.069 4.069 24 C -0.098 4.098 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.257 0.743 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.005 6.672 8.247 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.209 4.209 3 C -0.048 4.048 4 O -0.062 6.062 5 C -0.159 4.159 6 C 0.391 3.609 7 O -0.399 6.399 8 O -0.265 6.265 9 C 0.049 3.951 10 C -0.180 4.180 11 C 0.002 3.998 12 N -0.345 5.345 13 C -0.380 4.380 14 H 0.078 0.922 15 C -0.227 4.227 16 N -0.599 5.599 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.236 1.236 20 H -0.185 1.185 21 C 0.022 3.978 22 C -0.157 4.157 23 C -0.071 4.071 24 C -0.154 4.154 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.273 0.727 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.591 6.436 8.153 29.481 hybrid contribution 0.432 -0.951 -0.625 1.217 sum -27.159 5.485 7.529 28.712 Atomic orbital electron populations 1.20277 0.85761 1.04245 1.03360 1.20780 0.99433 0.90764 1.09894 1.25326 0.78553 1.02076 0.98878 1.84156 1.30849 1.20502 1.70679 1.20455 0.92802 0.81532 1.21136 1.19525 0.82819 0.85693 0.72815 1.90876 1.87041 1.14105 1.47916 1.86717 1.14635 1.41828 1.83304 1.22778 0.82149 0.93080 0.97085 1.22337 0.98361 1.00968 0.96286 1.21305 0.88082 0.94721 0.95673 1.44557 1.06036 1.73191 1.10704 1.18893 0.91008 1.10569 1.17502 0.92243 1.25874 0.97489 1.01290 0.98028 1.69957 1.31328 1.37753 1.20882 0.86015 0.76877 0.81642 0.78604 1.20397 1.23590 1.18462 1.21114 0.95897 0.96128 0.84617 1.22073 0.92994 0.99585 1.01094 1.20942 0.89965 0.99044 0.97125 1.20520 1.02699 0.88576 1.03653 0.90321 0.90827 0.89158 0.72704 0.89873 0.91528 0.91245 0.92426 0.94487 0.92842 0.93860 0.90532 0.88496 0.91440 0.89668 0.88573 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.16 71.24 0.72 0.12 16 2 C -0.21 -3.14 6.14 -20.06 -0.12 -3.26 16 3 C 0.02 0.30 12.00 67.11 0.81 1.10 16 4 O -0.17 -3.96 10.67 -4.96 -0.05 -4.01 16 5 C -0.11 -2.98 7.18 24.04 0.17 -2.81 16 6 C 0.54 17.51 7.90 69.96 0.55 18.07 16 7 O -0.51 -17.59 14.00 19.43 0.27 -17.32 16 8 O -0.35 -11.70 9.89 -56.81 -0.56 -12.26 16 9 C 0.10 3.57 2.42 30.63 0.07 3.64 16 10 C -0.14 -5.37 5.73 30.68 0.18 -5.20 16 11 C 0.13 5.67 4.20 86.36 0.36 6.04 16 12 N -0.62 -29.62 2.77 -699.09 -1.94 -31.56 16 13 C -0.25 -14.27 10.03 84.03 0.84 -13.43 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.03 -1.87 5.23 84.86 0.44 -1.43 16 16 N -0.95 -60.34 13.97 21.65 0.30 -60.03 16 17 Si 0.94 47.20 24.34 68.60 1.67 48.87 16 18 H -0.28 -13.30 6.62 99.48 0.66 -12.65 16 19 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 20 H -0.26 -12.53 6.64 99.48 0.66 -11.87 16 21 C 0.15 5.59 6.52 86.37 0.56 6.16 16 22 C -0.12 -3.88 5.75 30.67 0.18 -3.70 16 23 C -0.07 -1.49 6.20 -19.73 -0.12 -1.61 16 24 C -0.10 -1.84 9.58 71.24 0.68 -1.16 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.07 0.52 8.06 -2.39 -0.02 0.50 16 27 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.26 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.08 2.88 7.16 -2.39 -0.02 2.87 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.80 4.50 -2.39 -0.01 2.79 16 33 H 0.04 1.60 7.07 -2.38 -0.02 1.58 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 41 H 0.07 1.56 6.45 -2.39 -0.02 1.55 16 Total: -1.00 -72.51 333.85 5.96 -66.55 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.93 Total: 7.24 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.33 Total: 2.53 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -1.63 Total: -91.59 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.34 Total: -33.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.67 Total: 48.87 kcal Total: -72.51 5.96 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343364251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.388 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds