Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.50706 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.38013 * 119.51104 * 124.72623 * 4 3 2 6 6 C 1.39969 * 119.12536 * 179.77807 * 5 4 3 7 7 C 1.48059 * 120.89981 * 180.24488 * 6 5 4 8 8 O 1.21432 * 120.00042 * 0.24311 * 7 6 5 9 9 O 1.34667 * 120.00297 * 180.24952 * 7 6 5 10 10 C 1.45198 * 117.00331 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46922 * 30.00128 * 10 9 7 12 12 C 1.50702 * 109.47270 * 150.00081 * 10 9 7 13 13 H 1.08001 * 119.99849 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99879 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00203 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47394 * 89.99952 * 16 14 12 18 18 H 1.48501 * 109.47238 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.47308 * 330.00103 * 16 14 12 20 20 C 1.53003 * 109.47484 * 270.00228 * 10 9 7 21 21 C 1.53003 * 109.46931 * 64.99684 * 20 10 9 22 22 C 1.39657 * 118.20586 * 0.48545 * 6 5 4 23 23 C 1.38854 * 118.94275 * 359.75514 * 22 6 5 24 24 O 1.35685 * 119.61819 * 179.97438 * 23 22 6 25 25 N 1.31882 * 119.50405 * 304.99940 * 4 3 2 26 26 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 27 27 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 29 29 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 30 30 H 1.08995 * 109.47118 * 119.99765 * 2 1 3 31 31 H 1.08997 * 109.47394 * 59.99866 * 3 2 1 32 32 H 1.09004 * 109.47644 * 299.99937 * 3 2 1 33 33 H 1.08002 * 120.43951 * 0.02562 * 5 4 3 34 34 H 0.97007 * 120.00054 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47124 * 184.99658 * 20 10 9 36 36 H 1.09001 * 109.46925 * 304.99985 * 20 10 9 37 37 H 1.08998 * 109.46762 * 180.02562 * 21 20 10 38 38 H 1.09001 * 109.46946 * 299.99793 * 21 20 10 39 39 H 1.09001 * 109.47070 * 60.00389 * 21 20 10 40 40 H 1.08003 * 120.53236 * 179.78051 * 22 6 5 41 41 H 0.96699 * 113.99974 * 270.01887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2263 2.1270 -0.9880 6 6 5.6260 2.1256 -0.9781 7 6 6.3944 2.8512 -2.0151 8 8 5.8105 3.4620 -2.8872 9 8 7.7407 2.8336 -1.9912 10 6 8.4283 3.5664 -3.0393 11 1 7.8167 4.4127 -3.3521 12 6 9.7503 4.0676 -2.5177 13 1 10.0442 3.8568 -1.5000 14 6 10.5842 4.7960 -3.3393 15 7 10.2261 5.0531 -4.5783 16 14 12.2225 5.4178 -2.6924 17 1 13.2732 4.3992 -2.9446 18 1 12.5813 6.6811 -3.3858 19 1 12.1157 5.6677 -1.2324 20 6 8.6690 2.6418 -4.2344 21 6 7.3254 2.2324 -4.8412 22 6 6.2783 1.4170 0.0333 23 6 5.5177 0.7511 0.9852 24 8 6.1372 0.0581 1.9736 25 7 4.1969 0.7842 0.9392 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.6852 2.6600 -1.7558 34 1 10.8126 5.5659 -5.1562 35 1 9.2622 3.1647 -4.9846 36 1 9.2044 1.7520 -3.9033 37 1 7.4969 1.5734 -5.6923 38 1 6.7322 1.7095 -4.0910 39 1 6.7901 3.1223 -5.1724 40 1 7.3571 1.3878 0.0747 41 1 6.3162 -0.8663 1.7531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348315449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -113.190352 kcal Electronic energy + Delta-G solvation = -23303.723137 eV Core-core repulsion = 19762.514301 eV Total energy + Delta-G solvation = -3541.208836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81488 -39.45659 -37.45685 -35.95937 -35.03331 -33.63423 -32.56726 -31.37717 -30.76558 -27.45562 -27.07114 -24.99159 -23.16261 -22.95687 -21.87024 -20.62655 -19.66122 -18.66102 -17.23676 -17.07044 -16.35798 -15.99352 -15.72475 -15.38049 -15.17210 -15.00258 -14.48723 -14.30253 -13.74503 -13.21474 -12.99237 -12.89615 -12.46805 -12.34009 -12.15210 -11.86038 -11.62365 -11.54532 -11.42855 -11.34433 -11.26206 -11.02831 -10.88549 -10.72046 -10.35700 -10.11706 -9.90873 -9.82474 -9.52310 -9.45604 -8.90802 -8.90132 -8.52028 -6.24567 -4.32080 0.63103 0.88132 2.88489 3.21273 3.23098 3.28338 3.35018 3.45089 3.74497 4.26979 4.29659 4.72013 4.85601 4.86039 4.94875 5.05558 5.07805 5.22801 5.28173 5.44741 5.51285 5.58523 5.63804 5.80087 5.85779 6.00607 6.11691 6.13058 6.15609 6.22528 6.33036 6.37462 6.77028 6.86336 7.07638 7.11541 7.35168 7.53330 7.64712 7.75664 7.82488 8.06648 8.46377 8.78329 9.33307 10.82209 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.003554 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.633515 B = 7876.532307 C = 8618.552813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 C 0.144 3.856 5 C -0.125 4.125 6 C -0.046 4.046 7 C 0.496 3.504 8 O -0.500 6.500 9 O -0.346 6.346 10 C 0.222 3.778 11 H 0.049 0.951 12 C -0.523 4.523 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.912 3.088 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.136 4.136 23 C 0.305 3.695 24 O -0.478 6.478 25 N -0.485 5.485 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.267 0.733 35 H 0.111 0.889 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.159 0.841 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.464 -10.108 7.336 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.106 4.106 4 C 0.006 3.994 5 C -0.145 4.145 6 C -0.055 4.055 7 C 0.338 3.662 8 O -0.390 6.390 9 O -0.262 6.262 10 C 0.170 3.830 11 H 0.067 0.933 12 C -0.561 4.561 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.739 3.261 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.174 4.174 21 C -0.201 4.201 22 C -0.157 4.157 23 C 0.126 3.874 24 O -0.285 6.285 25 N -0.205 5.205 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.177 0.823 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.930 -9.734 7.833 18.712 hybrid contribution 1.494 0.373 -0.667 1.678 sum -12.436 -9.361 7.165 17.136 Atomic orbital electron populations 1.21783 0.95610 1.01718 1.01861 1.21444 0.95561 0.95560 1.02891 1.20617 0.87623 0.98660 1.03664 1.20878 0.96575 0.92629 0.89285 1.22151 0.92999 0.99230 1.00082 1.19745 0.93334 0.97464 0.94974 1.20754 0.83468 0.78715 0.83219 1.90788 1.71393 1.40807 1.36050 1.86529 1.16873 1.68188 1.54584 1.20788 0.90945 0.89557 0.81716 0.93290 1.21020 1.01266 1.34351 0.99470 0.91228 1.24881 0.98779 0.95449 0.94763 1.69882 1.37504 1.39013 1.06078 0.86265 0.82487 0.78250 0.79116 1.20302 1.20925 1.19581 1.22039 0.96134 0.99195 1.00051 1.21871 0.98884 1.00381 0.98963 1.22552 1.03078 0.97506 0.92567 1.18959 0.86587 0.94479 0.87406 1.84810 1.77000 1.27822 1.38834 1.66723 1.10020 1.19683 1.24123 0.92658 0.92686 0.92631 0.92085 0.90841 0.89667 0.89777 0.83045 0.92290 0.87136 0.93846 0.94639 0.95110 0.92709 0.82343 0.74257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.00 5.79 -26.73 -0.15 -1.16 16 3 C -0.07 -0.63 5.61 -27.88 -0.16 -0.79 16 4 C 0.14 1.81 6.17 -82.65 -0.51 1.30 16 5 C -0.12 -1.75 9.27 -39.02 -0.36 -2.11 16 6 C -0.05 -0.76 5.91 -104.69 -0.62 -1.38 16 7 C 0.50 10.21 6.37 34.76 0.22 10.43 16 8 O -0.50 -11.20 13.63 -19.21 -0.26 -11.46 16 9 O -0.35 -7.97 9.16 -40.40 -0.37 -8.34 16 10 C 0.22 5.75 2.25 -27.88 -0.06 5.68 16 11 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 12 C -0.52 -14.31 8.90 -34.44 -0.31 -14.62 16 13 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 15 N -0.89 -24.55 11.29 55.43 0.63 -23.92 16 16 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16 21 C -0.14 -3.06 8.56 37.16 0.32 -2.75 16 22 C -0.14 -2.03 9.64 -38.82 -0.37 -2.40 16 23 C 0.30 4.16 7.74 -17.17 -0.13 4.03 16 24 O -0.48 -5.56 13.56 -18.76 -0.25 -5.81 16 25 N -0.49 -6.61 9.87 -9.60 -0.09 -6.70 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.15 1.97 7.62 -52.49 -0.40 1.57 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.63 6.06 -51.93 -0.31 0.31 16 39 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 40 H 0.16 2.33 7.71 -52.48 -0.40 1.92 16 41 H 0.40 2.54 9.06 45.56 0.41 2.95 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -30.84 345.54 -7.30 -38.14 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.12 Total: 3.45 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.01 Total: -6.25 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.53 Total: -30.62 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.89 Total: -25.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.84 -7.30 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348315449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.055 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds