Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.50706 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.38013 * 119.51104 * 124.72623 * 4 3 2 6 6 C 1.39969 * 119.12536 * 179.77807 * 5 4 3 7 7 C 1.48059 * 120.89981 * 180.24488 * 6 5 4 8 8 O 1.21432 * 120.00042 * 0.24311 * 7 6 5 9 9 O 1.34667 * 120.00297 * 180.24952 * 7 6 5 10 10 C 1.45198 * 117.00331 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46922 * 30.00128 * 10 9 7 12 12 C 1.50702 * 109.47270 * 150.00081 * 10 9 7 13 13 H 1.08001 * 119.99849 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99879 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00203 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47394 * 89.99952 * 16 14 12 18 18 H 1.48501 * 109.47238 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.47308 * 330.00103 * 16 14 12 20 20 C 1.53003 * 109.47484 * 270.00228 * 10 9 7 21 21 C 1.53003 * 109.46931 * 64.99684 * 20 10 9 22 22 C 1.39657 * 118.20586 * 0.48545 * 6 5 4 23 23 C 1.38854 * 118.94275 * 359.75514 * 22 6 5 24 24 O 1.35685 * 119.61819 * 179.97438 * 23 22 6 25 25 N 1.31882 * 119.50405 * 304.99940 * 4 3 2 26 26 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 27 27 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 29 29 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 30 30 H 1.08995 * 109.47118 * 119.99765 * 2 1 3 31 31 H 1.08997 * 109.47394 * 59.99866 * 3 2 1 32 32 H 1.09004 * 109.47644 * 299.99937 * 3 2 1 33 33 H 1.08002 * 120.43951 * 0.02562 * 5 4 3 34 34 H 0.97007 * 120.00054 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47124 * 184.99658 * 20 10 9 36 36 H 1.09001 * 109.46925 * 304.99985 * 20 10 9 37 37 H 1.08998 * 109.46762 * 180.02562 * 21 20 10 38 38 H 1.09001 * 109.46946 * 299.99793 * 21 20 10 39 39 H 1.09001 * 109.47070 * 60.00389 * 21 20 10 40 40 H 1.08003 * 120.53236 * 179.78051 * 22 6 5 41 41 H 0.96699 * 113.99974 * 270.01887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2263 2.1270 -0.9880 6 6 5.6260 2.1256 -0.9781 7 6 6.3944 2.8512 -2.0151 8 8 5.8105 3.4620 -2.8872 9 8 7.7407 2.8336 -1.9912 10 6 8.4283 3.5664 -3.0393 11 1 7.8167 4.4127 -3.3521 12 6 9.7503 4.0676 -2.5177 13 1 10.0442 3.8568 -1.5000 14 6 10.5842 4.7960 -3.3393 15 7 10.2261 5.0531 -4.5783 16 14 12.2225 5.4178 -2.6924 17 1 13.2732 4.3992 -2.9446 18 1 12.5813 6.6811 -3.3858 19 1 12.1157 5.6677 -1.2324 20 6 8.6690 2.6418 -4.2344 21 6 7.3254 2.2324 -4.8412 22 6 6.2783 1.4170 0.0333 23 6 5.5177 0.7511 0.9852 24 8 6.1372 0.0581 1.9736 25 7 4.1969 0.7842 0.9392 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.6852 2.6600 -1.7558 34 1 10.8126 5.5659 -5.1562 35 1 9.2622 3.1647 -4.9846 36 1 9.2044 1.7520 -3.9033 37 1 7.4969 1.5734 -5.6923 38 1 6.7322 1.7095 -4.0910 39 1 6.7901 3.1223 -5.1724 40 1 7.3571 1.3878 0.0747 41 1 6.3162 -0.8663 1.7531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348315449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -133.408807 kcal Electronic energy + Delta-G solvation = -23304.599875 eV Core-core repulsion = 19762.514301 eV Total energy + Delta-G solvation = -3542.085574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.05358 -41.03199 -38.44809 -37.71375 -35.92610 -35.51835 -33.82632 -33.24073 -31.71638 -29.41758 -27.92487 -26.45525 -24.99687 -23.97898 -22.93293 -22.03480 -21.26063 -19.88549 -18.81707 -18.66982 -17.79535 -17.43470 -17.17109 -16.82846 -16.56686 -16.10933 -15.84018 -15.22520 -14.97660 -14.77681 -14.58774 -14.10377 -13.73343 -13.57429 -13.36817 -13.29815 -13.17884 -13.02636 -12.86237 -12.72165 -12.58191 -12.34750 -12.17541 -12.01055 -11.85228 -11.71558 -11.54731 -11.43392 -11.09424 -10.88743 -10.64437 -10.55088 -9.95271 -8.30009 -6.46806 -0.62673 -0.18684 1.40551 1.42521 1.45370 1.53126 1.74839 2.34216 2.39281 2.58286 2.99954 3.29952 3.60346 3.77815 3.81876 4.09911 4.20736 4.23328 4.32478 4.34634 4.36253 4.46416 4.56687 4.70411 4.79084 4.82701 4.89241 4.94785 5.03287 5.05998 5.16883 5.20663 5.30497 5.36093 5.40414 5.47770 5.52230 5.62857 5.88302 6.04417 6.51375 6.54918 6.74614 6.82085 7.23829 8.76752 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.003554 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.633515 B = 7876.532307 C = 8618.552813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.068 4.068 4 C 0.154 3.846 5 C -0.124 4.124 6 C -0.063 4.063 7 C 0.494 3.506 8 O -0.524 6.524 9 O -0.353 6.353 10 C 0.226 3.774 11 H 0.011 0.989 12 C -0.551 4.551 13 H 0.066 0.934 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.130 4.130 21 C -0.131 4.131 22 C -0.142 4.142 23 C 0.314 3.686 24 O -0.481 6.481 25 N -0.488 5.488 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.271 0.729 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.155 0.845 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 -11.101 8.372 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.105 4.105 4 C 0.016 3.984 5 C -0.144 4.144 6 C -0.072 4.072 7 C 0.338 3.662 8 O -0.415 6.415 9 O -0.269 6.269 10 C 0.173 3.827 11 H 0.029 0.971 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.550 5.550 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.168 4.168 21 C -0.188 4.188 22 C -0.163 4.163 23 C 0.135 3.865 24 O -0.292 6.292 25 N -0.209 5.209 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.173 0.827 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -14.676 -10.766 8.877 20.251 hybrid contribution 1.635 0.633 -0.931 1.985 sum -13.041 -10.133 7.946 18.327 Atomic orbital electron populations 1.21758 0.94165 1.02280 1.02460 1.21403 0.96759 0.94728 1.02201 1.20781 0.85083 0.99572 1.05100 1.21382 0.98088 0.90944 0.88007 1.22300 0.91880 0.99416 1.00772 1.19548 0.94018 0.98832 0.94823 1.21433 0.82565 0.78383 0.83794 1.90764 1.71392 1.41984 1.37348 1.86508 1.18565 1.67995 1.53823 1.20494 0.90122 0.89141 0.82963 0.97107 1.21300 1.02312 1.35608 0.99637 0.91622 1.25762 1.02235 0.95174 0.94869 1.69997 1.38791 1.39138 1.07078 0.85229 0.78011 0.77927 0.78546 1.19149 1.20269 1.19201 1.21884 0.97359 0.98602 0.98953 1.21727 0.97037 1.00201 0.99862 1.22521 1.03062 0.97897 0.92845 1.18932 0.86584 0.94029 0.86951 1.84759 1.76740 1.29635 1.38050 1.66888 1.09854 1.19767 1.24358 0.91994 0.92202 0.92107 0.92513 0.91828 0.88551 0.87998 0.82221 0.91931 0.89290 0.93420 0.91810 0.94695 0.94260 0.82682 0.71470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.11 -1.68 5.79 30.59 0.18 -1.50 16 3 C -0.07 -1.09 5.61 29.85 0.17 -0.92 16 4 C 0.15 3.57 6.17 42.50 0.26 3.84 16 5 C -0.12 -3.36 9.27 22.64 0.21 -3.15 16 6 C -0.06 -2.10 5.91 -19.91 -0.12 -2.21 16 7 C 0.49 20.88 6.37 70.43 0.45 21.33 16 8 O -0.52 -24.18 13.63 20.06 0.27 -23.91 16 9 O -0.35 -16.80 9.16 -55.76 -0.51 -17.31 16 10 C 0.23 12.12 2.25 29.85 0.07 12.19 16 11 H 0.01 0.67 7.16 -2.39 -0.02 0.65 16 12 C -0.55 -30.92 8.90 25.60 0.23 -30.69 16 13 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 14 C 0.02 1.07 5.29 84.66 0.45 1.52 16 15 N -0.91 -51.43 11.29 21.45 0.24 -51.18 16 16 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C -0.13 -6.42 5.49 30.60 0.17 -6.26 16 21 C -0.13 -5.62 8.56 71.98 0.62 -5.00 16 22 C -0.14 -4.18 9.64 22.76 0.22 -3.96 16 23 C 0.31 8.13 7.74 84.79 0.66 8.79 16 24 O -0.48 -10.26 13.56 -90.04 -1.22 -11.48 16 25 N -0.49 -12.38 9.87 -297.16 -2.93 -15.31 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.08 7.94 -2.39 -0.02 1.06 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.30 7.86 -2.39 -0.02 1.28 16 33 H 0.16 4.01 7.62 -2.91 -0.02 3.99 16 34 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 35 H 0.09 4.80 5.95 -2.39 -0.01 4.79 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.03 1.44 6.06 -2.39 -0.01 1.42 16 39 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 40 H 0.16 4.60 7.71 -2.91 -0.02 4.58 16 41 H 0.42 4.41 9.06 -74.06 -0.67 3.74 16 Total: -1.00 -67.14 345.54 2.52 -64.62 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.37 Total: 17.05 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.26 Total: -7.00 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -2.69 Total: -66.49 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.46 Total: -52.70 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.14 2.52 -64.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348315449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.788 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds