Wall clock time and date at job start Tue Mar 31 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47313 * 2 1 4 4 C 1.50692 * 109.47229 * 180.02562 * 3 2 1 5 5 C 1.38024 * 119.51318 * 125.00270 * 4 3 2 6 6 C 1.39970 * 119.12757 * 180.27767 * 5 4 3 7 7 C 1.48054 * 120.89673 * 179.69989 * 6 5 4 8 8 O 1.21438 * 120.00019 * 359.97438 * 7 6 5 9 9 O 1.34667 * 120.00455 * 179.97438 * 7 6 5 10 10 C 1.45191 * 117.00551 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47141 * 330.00421 * 10 9 7 12 12 C 1.50703 * 109.47450 * 209.99814 * 10 9 7 13 13 H 1.08002 * 119.99632 * 0.02562 * 12 10 9 14 14 C 1.37880 * 120.00281 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00002 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99682 * 0.02562 * 14 12 10 17 17 H 1.48497 * 109.47191 * 89.99812 * 16 14 12 18 18 H 1.48501 * 109.47016 * 209.99360 * 16 14 12 19 19 H 1.48500 * 109.47371 * 329.99602 * 16 14 12 20 20 C 1.53000 * 109.47189 * 89.99904 * 10 9 7 21 21 C 1.52995 * 109.47230 * 295.00447 * 20 10 9 22 22 C 1.39661 * 118.20397 * 359.47313 * 6 5 4 23 23 C 1.38849 * 118.94083 * 0.52230 * 22 6 5 24 24 O 1.35695 * 119.61550 * 179.71590 * 23 22 6 25 25 N 1.31883 * 119.50919 * 305.01570 * 4 3 2 26 26 H 1.09004 * 109.47246 * 300.00479 * 1 2 3 27 27 H 1.09003 * 109.46880 * 60.00182 * 1 2 3 28 28 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47104 * 240.00198 * 2 1 3 30 30 H 1.09001 * 109.47398 * 119.99800 * 2 1 3 31 31 H 1.08995 * 109.47081 * 59.99555 * 3 2 1 32 32 H 1.09001 * 109.46725 * 300.00212 * 3 2 1 33 33 H 1.08002 * 120.43216 * 359.97438 * 5 4 3 34 34 H 0.96995 * 119.99598 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46967 * 55.00177 * 20 10 9 36 36 H 1.09000 * 109.47672 * 175.00036 * 20 10 9 37 37 H 1.09002 * 109.47215 * 179.97438 * 21 20 10 38 38 H 1.09002 * 109.47264 * 299.99433 * 21 20 10 39 39 H 1.09000 * 109.47375 * 59.99749 * 21 20 10 40 40 H 1.07993 * 120.52482 * 180.21926 * 22 6 5 41 41 H 0.96691 * 114.00492 * 270.02359 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1317 -0.9847 6 6 5.6262 2.1214 -0.9810 7 6 6.3945 2.8417 -2.0216 8 8 5.8106 3.4519 -2.8942 9 8 7.7408 2.8203 -2.0005 10 6 8.4283 3.5479 -3.0521 11 1 7.8143 3.5514 -3.9527 12 6 9.7471 2.8802 -3.3457 13 1 10.0390 1.9969 -2.7970 14 6 10.5804 3.3962 -4.3154 15 7 11.7310 2.8132 -4.5719 16 14 10.0750 4.9235 -5.2648 17 1 10.5631 6.1324 -4.5539 18 1 10.6656 4.8779 -6.6266 19 1 8.5945 4.9744 -5.3689 20 6 8.6758 4.9879 -2.5981 21 6 7.3355 5.7039 -2.4199 22 6 6.2784 1.4173 0.0336 23 6 5.5177 0.7511 0.9852 24 8 6.1372 0.0580 1.9736 25 7 4.1970 0.7838 0.9390 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.6853 2.6677 -1.7504 34 1 12.3173 3.1765 -5.2539 35 1 9.2137 4.9826 -1.6500 36 1 9.2690 5.5090 -3.3495 37 1 7.5118 6.7297 -2.0960 38 1 6.7976 5.7093 -3.3679 39 1 6.7422 5.1829 -1.6685 40 1 7.3571 1.3875 0.0745 41 1 6.3166 -0.8662 1.7531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348315450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:43 Heat of formation + Delta-G solvation = -103.407517 kcal Electronic energy + Delta-G solvation = -23379.811207 eV Core-core repulsion = 19839.026587 eV Total energy + Delta-G solvation = -3540.784620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90370 -39.67381 -37.50034 -36.21182 -35.08671 -33.75365 -32.62755 -31.94230 -30.81935 -27.97079 -27.12188 -25.13337 -23.02118 -22.87920 -22.01001 -20.96031 -19.90728 -18.78329 -17.45778 -17.12921 -16.46634 -16.25372 -15.87325 -15.58063 -15.32766 -15.16892 -14.48482 -14.34304 -13.78954 -13.57049 -13.11560 -12.97457 -12.62134 -12.45364 -12.29188 -12.05925 -11.89805 -11.84486 -11.63237 -11.57550 -11.40022 -11.30743 -10.91860 -10.82934 -10.36870 -10.10651 -9.97067 -9.73956 -9.69806 -9.52771 -9.17564 -8.96134 -8.72941 -6.29856 -4.33083 0.54057 0.82335 2.75470 3.10045 3.13276 3.26060 3.27703 3.35983 3.66020 4.19797 4.24250 4.64706 4.78580 4.82795 4.87884 4.98722 5.00387 5.12885 5.19082 5.38144 5.46724 5.54508 5.58026 5.68070 5.73796 5.81648 5.83450 5.89833 5.96547 6.05359 6.10118 6.27351 6.33213 6.49380 6.57454 6.63802 6.93000 7.22094 7.31955 7.39845 7.70586 8.07221 8.42585 8.76109 9.26334 10.81984 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.003687 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.368951 B = 7591.776286 C = 8169.889591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 C 0.145 3.855 5 C -0.124 4.124 6 C -0.048 4.048 7 C 0.497 3.503 8 O -0.502 6.502 9 O -0.331 6.331 10 C 0.198 3.802 11 H 0.049 0.951 12 C -0.528 4.528 13 H 0.088 0.912 14 C 0.081 3.919 15 N -0.886 5.886 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.260 1.260 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.134 4.134 23 C 0.307 3.693 24 O -0.478 6.478 25 N -0.484 5.484 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.270 0.730 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.161 0.839 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 -3.514 9.102 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.106 4.106 4 C 0.007 3.993 5 C -0.144 4.144 6 C -0.057 4.057 7 C 0.340 3.660 8 O -0.392 6.392 9 O -0.246 6.246 10 C 0.145 3.855 11 H 0.066 0.934 12 C -0.565 4.565 13 H 0.106 0.894 14 C -0.122 4.122 15 N -0.522 5.522 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.185 1.185 20 C -0.187 4.187 21 C -0.208 4.208 22 C -0.155 4.155 23 C 0.128 3.872 24 O -0.285 6.285 25 N -0.204 5.204 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.178 0.822 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -17.940 -3.254 9.655 20.632 hybrid contribution 0.609 0.910 -1.402 1.779 sum -17.331 -2.344 8.253 19.339 Atomic orbital electron populations 1.21783 0.95589 1.01761 1.01838 1.21449 0.95582 0.95507 1.02958 1.20619 0.87572 0.98731 1.03646 1.20886 0.96609 0.92504 0.89306 1.22142 0.92890 0.99265 1.00102 1.19640 0.93279 0.97919 0.94861 1.20840 0.83246 0.78361 0.83529 1.90788 1.71356 1.40865 1.36150 1.86549 1.17015 1.67843 1.53196 1.21071 0.92489 0.87614 0.84360 0.93356 1.20758 0.99827 1.14394 1.21539 0.89408 1.24724 0.94468 0.97053 0.95987 1.69827 1.09761 1.40203 1.32427 0.87005 0.79941 0.83389 0.79171 1.19833 1.21580 1.18475 1.22381 0.96717 0.97114 1.02449 1.21906 0.98050 0.99163 1.01657 1.22573 1.03192 0.97347 0.92437 1.18957 0.86546 0.94354 0.87385 1.84801 1.76963 1.27963 1.38760 1.66732 1.10044 1.19596 1.24032 0.92636 0.92672 0.92645 0.92036 0.90804 0.89656 0.89788 0.83032 0.91951 0.91065 0.91591 0.93750 0.92455 0.93716 0.82186 0.74059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.97 5.79 -26.73 -0.15 -1.12 16 3 C -0.07 -0.60 5.61 -27.88 -0.16 -0.75 16 4 C 0.14 1.73 6.18 -82.65 -0.51 1.22 16 5 C -0.12 -1.64 9.27 -39.01 -0.36 -2.00 16 6 C -0.05 -0.75 5.91 -104.69 -0.62 -1.37 16 7 C 0.50 9.63 6.38 34.76 0.22 9.85 16 8 O -0.50 -10.43 13.62 -19.22 -0.26 -10.69 16 9 O -0.33 -7.26 9.16 -40.40 -0.37 -7.63 16 10 C 0.20 4.82 1.84 -27.88 -0.05 4.77 16 11 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 12 C -0.53 -14.69 9.48 -34.44 -0.33 -15.02 16 13 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 14 C 0.08 2.28 5.45 -17.82 -0.10 2.19 16 15 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 16 Si 0.88 21.11 24.41 -169.99 -4.15 16.96 16 17 H -0.27 -6.29 6.83 56.52 0.39 -5.90 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 20 C -0.15 -3.29 5.14 -26.73 -0.14 -3.43 16 21 C -0.15 -2.90 8.56 37.16 0.32 -2.58 16 22 C -0.13 -1.93 9.64 -38.82 -0.37 -2.30 16 23 C 0.31 4.05 7.74 -17.17 -0.13 3.92 16 24 O -0.48 -5.42 13.56 -18.79 -0.25 -5.68 16 25 N -0.48 -6.35 9.87 -9.60 -0.09 -6.44 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 33 H 0.15 1.83 7.62 -52.49 -0.40 1.43 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.07 1.50 3.22 -51.93 -0.17 1.34 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.13 7.79 -51.93 -0.40 0.73 16 39 H 0.04 0.84 6.06 -51.93 -0.31 0.52 16 40 H 0.16 2.28 7.71 -52.49 -0.40 1.88 16 41 H 0.40 2.51 9.06 45.56 0.41 2.93 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -31.86 338.77 -6.25 -38.11 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.99 Total: 2.89 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.01 Total: -7.27 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.68 Total: -31.79 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.89 Total: -23.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.15 Total: 16.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.86 -6.25 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348315450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.295 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds