Wall clock time and date at job start Tue Mar 31 2020 06:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47313 * 2 1 4 4 C 1.50692 * 109.47229 * 180.02562 * 3 2 1 5 5 C 1.38024 * 119.51318 * 125.00270 * 4 3 2 6 6 C 1.39970 * 119.12757 * 180.27767 * 5 4 3 7 7 C 1.48054 * 120.89673 * 179.69989 * 6 5 4 8 8 O 1.21438 * 120.00019 * 359.97438 * 7 6 5 9 9 O 1.34667 * 120.00455 * 179.97438 * 7 6 5 10 10 C 1.45191 * 117.00551 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47141 * 330.00421 * 10 9 7 12 12 C 1.50703 * 109.47450 * 209.99814 * 10 9 7 13 13 H 1.08002 * 119.99632 * 0.02562 * 12 10 9 14 14 C 1.37880 * 120.00281 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00002 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99682 * 0.02562 * 14 12 10 17 17 H 1.48497 * 109.47191 * 89.99812 * 16 14 12 18 18 H 1.48501 * 109.47016 * 209.99360 * 16 14 12 19 19 H 1.48500 * 109.47371 * 329.99602 * 16 14 12 20 20 C 1.53000 * 109.47189 * 89.99904 * 10 9 7 21 21 C 1.52995 * 109.47230 * 295.00447 * 20 10 9 22 22 C 1.39661 * 118.20397 * 359.47313 * 6 5 4 23 23 C 1.38849 * 118.94083 * 0.52230 * 22 6 5 24 24 O 1.35695 * 119.61550 * 179.71590 * 23 22 6 25 25 N 1.31883 * 119.50919 * 305.01570 * 4 3 2 26 26 H 1.09004 * 109.47246 * 300.00479 * 1 2 3 27 27 H 1.09003 * 109.46880 * 60.00182 * 1 2 3 28 28 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47104 * 240.00198 * 2 1 3 30 30 H 1.09001 * 109.47398 * 119.99800 * 2 1 3 31 31 H 1.08995 * 109.47081 * 59.99555 * 3 2 1 32 32 H 1.09001 * 109.46725 * 300.00212 * 3 2 1 33 33 H 1.08002 * 120.43216 * 359.97438 * 5 4 3 34 34 H 0.96995 * 119.99598 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46967 * 55.00177 * 20 10 9 36 36 H 1.09000 * 109.47672 * 175.00036 * 20 10 9 37 37 H 1.09002 * 109.47215 * 179.97438 * 21 20 10 38 38 H 1.09002 * 109.47264 * 299.99433 * 21 20 10 39 39 H 1.09000 * 109.47375 * 59.99749 * 21 20 10 40 40 H 1.07993 * 120.52482 * 180.21926 * 22 6 5 41 41 H 0.96691 * 114.00492 * 270.02359 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1317 -0.9847 6 6 5.6262 2.1214 -0.9810 7 6 6.3945 2.8417 -2.0216 8 8 5.8106 3.4519 -2.8942 9 8 7.7408 2.8203 -2.0005 10 6 8.4283 3.5479 -3.0521 11 1 7.8143 3.5514 -3.9527 12 6 9.7471 2.8802 -3.3457 13 1 10.0390 1.9969 -2.7970 14 6 10.5804 3.3962 -4.3154 15 7 11.7310 2.8132 -4.5719 16 14 10.0750 4.9235 -5.2648 17 1 10.5631 6.1324 -4.5539 18 1 10.6656 4.8779 -6.6266 19 1 8.5945 4.9744 -5.3689 20 6 8.6758 4.9879 -2.5981 21 6 7.3355 5.7039 -2.4199 22 6 6.2784 1.4173 0.0336 23 6 5.5177 0.7511 0.9852 24 8 6.1372 0.0580 1.9736 25 7 4.1970 0.7838 0.9390 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.6853 2.6677 -1.7504 34 1 12.3173 3.1765 -5.2539 35 1 9.2137 4.9826 -1.6500 36 1 9.2690 5.5090 -3.3495 37 1 7.5118 6.7297 -2.0960 38 1 6.7976 5.7093 -3.3679 39 1 6.7422 5.1829 -1.6685 40 1 7.3571 1.3875 0.0745 41 1 6.3166 -0.8662 1.7531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348315450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:42 Heat of formation + Delta-G solvation = -126.058622 kcal Electronic energy + Delta-G solvation = -23380.793433 eV Core-core repulsion = 19839.026587 eV Total energy + Delta-G solvation = -3541.766846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10831 -41.13154 -38.47198 -37.84308 -35.94652 -35.53932 -34.07680 -33.57513 -31.72546 -29.86100 -27.93164 -26.49454 -24.70039 -23.98927 -23.13494 -22.21952 -21.35301 -19.98531 -19.04666 -18.70442 -17.91311 -17.70095 -17.22167 -16.86384 -16.71984 -16.06197 -15.83573 -15.36539 -15.19715 -14.86534 -14.64035 -14.24540 -13.92771 -13.75058 -13.70955 -13.39436 -13.25686 -13.15894 -13.02512 -12.72674 -12.61394 -12.35459 -12.08465 -12.01268 -11.89489 -11.57351 -11.55264 -11.42644 -11.20188 -11.10929 -10.77819 -10.64516 -9.95849 -8.46875 -6.56201 -0.65337 -0.19549 1.22613 1.30115 1.39043 1.39591 1.61251 2.17738 2.33800 2.58014 2.85257 3.27600 3.49113 3.76523 3.80505 4.04772 4.05837 4.13839 4.18241 4.22515 4.23300 4.33220 4.48545 4.55531 4.70075 4.81796 4.87990 4.90038 4.91228 4.94905 4.98239 5.02991 5.20383 5.26327 5.29475 5.36003 5.40038 5.52060 5.53075 6.06926 6.47562 6.50246 6.69751 6.73971 7.08029 8.68903 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.003687 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.368951 B = 7591.776286 C = 8169.889591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.067 4.067 4 C 0.153 3.847 5 C -0.120 4.120 6 C -0.064 4.064 7 C 0.497 3.503 8 O -0.517 6.517 9 O -0.344 6.344 10 C 0.202 3.798 11 H 0.036 0.964 12 C -0.541 4.541 13 H 0.047 0.953 14 C 0.032 3.968 15 N -0.929 5.929 16 Si 0.936 3.064 17 H -0.250 1.250 18 H -0.284 1.284 19 H -0.252 1.252 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.143 4.143 23 C 0.313 3.687 24 O -0.483 6.483 25 N -0.488 5.488 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.276 0.724 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.153 0.847 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 -2.258 9.595 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.105 4.105 4 C 0.015 3.985 5 C -0.140 4.140 6 C -0.073 4.073 7 C 0.342 3.658 8 O -0.408 6.408 9 O -0.259 6.259 10 C 0.148 3.852 11 H 0.054 0.946 12 C -0.579 4.579 13 H 0.066 0.934 14 C -0.168 4.168 15 N -0.567 5.567 16 Si 0.761 3.239 17 H -0.176 1.176 18 H -0.211 1.211 19 H -0.176 1.176 20 C -0.185 4.185 21 C -0.199 4.199 22 C -0.164 4.164 23 C 0.134 3.866 24 O -0.293 6.293 25 N -0.209 5.209 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.183 0.817 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.171 0.829 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -20.397 -2.026 10.171 22.882 hybrid contribution 1.336 0.349 -1.455 2.006 sum -19.060 -1.677 8.716 21.026 Atomic orbital electron populations 1.21757 0.94148 1.02238 1.02507 1.21412 0.96784 0.94900 1.02128 1.20779 0.85050 0.99430 1.05219 1.21414 0.98115 0.90875 0.88093 1.22318 0.91711 0.99272 1.00686 1.19491 0.94016 0.99135 0.94619 1.21402 0.82189 0.78141 0.84100 1.90762 1.71201 1.41739 1.37053 1.86531 1.18875 1.68090 1.52426 1.20764 0.90601 0.88948 0.84876 0.94646 1.20942 1.01780 1.13659 1.21506 0.93442 1.25553 0.94209 1.00285 0.96771 1.69952 1.11119 1.42148 1.33467 0.86029 0.80033 0.79939 0.77880 1.17571 1.21050 1.17619 1.22295 0.98469 0.95519 1.02267 1.21824 0.96007 1.00578 1.01503 1.22524 1.03002 0.97992 0.92930 1.18937 0.86607 0.94028 0.87021 1.84748 1.76775 1.29655 1.38153 1.66885 1.09810 1.19773 1.24421 0.92052 0.91912 0.92338 0.92611 0.91946 0.88467 0.87785 0.81749 0.91484 0.90847 0.91968 0.90585 0.92995 0.93726 0.82917 0.71498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.11 -1.63 5.79 30.60 0.18 -1.45 16 3 C -0.07 -0.99 5.61 29.85 0.17 -0.82 16 4 C 0.15 3.34 6.18 42.50 0.26 3.60 16 5 C -0.12 -2.98 9.27 22.64 0.21 -2.77 16 6 C -0.06 -1.97 5.91 -19.91 -0.12 -2.09 16 7 C 0.50 19.30 6.38 70.43 0.45 19.75 16 8 O -0.52 -21.24 13.62 20.04 0.27 -20.97 16 9 O -0.34 -15.44 9.16 -55.76 -0.51 -15.95 16 10 C 0.20 9.95 1.84 29.85 0.06 10.01 16 11 H 0.04 1.84 6.22 -2.39 -0.01 1.82 16 12 C -0.54 -31.24 9.48 25.60 0.24 -31.00 16 13 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 14 C 0.03 1.82 5.45 84.66 0.46 2.28 16 15 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16 16 Si 0.94 43.23 24.41 68.60 1.67 44.90 16 17 H -0.25 -10.68 6.83 99.48 0.68 -10.00 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 20 C -0.15 -6.38 5.14 30.59 0.16 -6.22 16 21 C -0.14 -5.15 8.56 71.98 0.62 -4.53 16 22 C -0.14 -4.10 9.64 22.76 0.22 -3.88 16 23 C 0.31 7.96 7.74 84.78 0.66 8.61 16 24 O -0.48 -10.36 13.56 -90.15 -1.22 -11.58 16 25 N -0.49 -11.99 9.87 -297.16 -2.93 -14.92 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.04 7.94 -2.39 -0.02 1.02 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.15 7.86 -2.39 -0.02 1.13 16 33 H 0.16 3.62 7.62 -2.91 -0.02 3.59 16 34 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.06 2.71 3.22 -2.39 -0.01 2.71 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.93 7.79 -2.39 -0.02 1.91 16 39 H 0.04 1.60 6.06 -2.39 -0.01 1.58 16 40 H 0.15 4.51 7.71 -2.91 -0.02 4.49 16 41 H 0.42 4.72 9.06 -74.06 -0.67 4.05 16 Total: -1.00 -69.60 338.77 2.15 -67.46 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.30 Total: 16.38 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 4.27 Total: -9.39 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.63 Total: -70.85 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.46 Total: -48.50 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.67 Total: 44.90 kcal Total: -69.60 2.15 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348315450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.603 kcal (2) G-P(sol) polarization free energy of solvation -69.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds