Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47307 * 249.44147 * 3 2 1 5 5 C 1.37090 * 119.99879 * 277.60045 * 4 3 2 6 6 H 1.08003 * 119.99669 * 225.11310 * 5 4 3 7 7 C 1.38952 * 120.00375 * 45.11322 * 5 4 3 8 8 N 1.31410 * 119.99982 * 34.74958 * 7 5 4 9 9 Si 1.86799 * 119.99743 * 214.75192 * 7 5 4 10 10 H 1.48502 * 109.47617 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47133 * 120.00168 * 9 7 5 12 12 H 1.48503 * 109.47014 * 239.99552 * 9 7 5 13 13 C 1.34774 * 119.99729 * 97.59526 * 4 3 2 14 14 O 1.21287 * 120.00233 * 183.76154 * 13 4 3 15 15 C 1.50706 * 119.99997 * 3.76033 * 13 4 3 16 16 C 1.50697 * 115.55118 * 291.57690 * 15 13 4 17 17 O 1.20823 * 120.00126 * 102.31244 * 16 15 13 18 18 O 1.34237 * 119.99953 * 282.31231 * 16 15 13 19 19 C 1.52998 * 117.49708 * 145.90628 * 15 13 4 20 20 C 1.53004 * 117.49901 * 359.97438 * 19 15 13 21 21 C 1.53000 * 117.49972 * 145.02166 * 19 15 13 22 22 C 1.52998 * 117.49798 * 77.24667 * 15 13 4 23 23 C 1.52998 * 117.49999 * 214.97914 * 22 15 13 24 24 C 1.53003 * 117.49720 * 359.97244 * 22 15 13 25 25 H 4.40643 * 5.51430 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46626 * 129.44603 * 3 2 1 27 27 H 1.08999 * 109.47211 * 9.44862 * 3 2 1 28 28 H 0.96998 * 119.99508 * 179.97438 * 8 7 5 29 29 H 0.96696 * 116.99893 * 185.03378 * 18 16 15 30 30 H 1.09012 * 109.46773 * 76.48808 * 20 19 15 31 31 H 1.09003 * 109.47262 * 196.48482 * 20 19 15 32 32 H 1.08995 * 109.47299 * 316.49017 * 20 19 15 33 33 H 1.08996 * 109.46659 * 8.60909 * 21 19 15 34 34 H 1.09001 * 109.46821 * 128.60607 * 21 19 15 35 35 H 1.09004 * 109.46761 * 248.60696 * 21 19 15 36 36 H 1.08998 * 109.46997 * 75.67926 * 23 22 15 37 37 H 1.08997 * 109.47055 * 195.67902 * 23 22 15 38 38 H 1.08999 * 109.47081 * 315.67814 * 23 22 15 39 39 H 1.09007 * 109.46904 * 72.68841 * 24 22 15 40 40 H 1.09002 * 109.47024 * 192.67944 * 24 22 15 41 41 H 1.08999 * 109.47663 * 312.68549 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4859 1.2933 5 6 3.2140 1.8331 1.5341 6 1 4.0965 2.2472 1.9990 7 6 2.1596 2.6660 1.1801 8 7 0.9219 2.2335 1.2701 9 14 2.5014 4.4002 0.5760 10 1 3.9667 4.6415 0.5670 11 1 1.9645 4.5602 -0.7993 12 1 1.8448 5.3779 1.4806 13 6 3.5046 -0.3922 2.2462 14 8 3.8439 0.0072 3.3400 15 6 3.4973 -1.8704 1.9527 16 6 2.1363 -2.4880 1.7599 17 8 1.7376 -2.7359 0.6466 18 8 1.3670 -2.7629 2.8250 19 6 4.5745 -2.7283 2.6195 20 6 5.5769 -2.0198 3.5327 21 6 4.1876 -4.1479 3.0390 22 6 4.6519 -2.4309 1.1199 23 6 4.3365 -3.5760 0.1555 24 6 5.7252 -1.4477 0.6483 25 1 -1.0501 0.0001 -0.0002 26 1 3.0090 0.6538 -0.7937 27 1 3.0098 -1.0129 -0.1687 28 1 0.1859 2.8151 1.0233 29 1 0.5351 -3.2264 2.6577 30 1 5.1018 -1.7936 4.4874 31 1 6.4374 -2.6677 3.6996 32 1 5.9056 -1.0933 3.0620 33 1 3.1990 -4.3859 2.6465 34 1 4.9160 -4.8551 2.6423 35 1 4.1722 -4.2137 4.1269 36 1 3.8200 -3.1820 -0.7198 37 1 5.2648 -4.0552 -0.1555 38 1 3.7001 -4.3066 0.6547 39 1 6.3434 -1.1507 1.4956 40 1 6.3493 -1.9258 -0.1067 41 1 5.2478 -0.5663 0.2202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588395577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -25.028823 kcal Electronic energy + Delta-G solvation = -25984.807864 eV Core-core repulsion = 22447.421999 eV Total energy + Delta-G solvation = -3537.385865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07486 -38.72304 -37.28453 -35.74127 -34.93028 -32.01005 -31.32465 -30.81508 -28.71879 -28.59229 -26.21291 -25.93299 -24.76722 -23.32347 -21.13522 -18.60962 -17.94644 -17.65625 -17.19112 -16.78976 -16.29597 -15.80960 -15.06983 -14.68481 -14.42560 -14.05653 -13.85494 -13.54307 -13.16189 -13.10027 -12.62890 -12.33622 -12.22651 -12.09784 -12.01816 -11.93841 -11.91362 -11.66286 -11.54265 -11.35771 -11.10044 -10.96897 -10.63163 -10.38363 -10.36844 -10.33279 -9.56830 -9.26081 -9.22787 -9.03019 -8.64644 -8.29290 -7.51554 -6.28810 -3.94284 2.56664 3.14976 3.23550 3.28903 3.34211 3.47120 3.94562 4.04558 4.16520 4.27721 4.64672 4.75900 4.92063 5.03501 5.23218 5.28417 5.30469 5.63423 5.64377 5.75558 5.78125 5.85594 5.88670 6.00488 6.02348 6.07959 6.15925 6.22005 6.25821 6.29967 6.36775 6.45229 6.51999 6.57294 6.87615 6.89331 7.06859 7.60650 8.27783 8.34001 8.45470 9.01423 9.15456 9.33672 9.97060 10.65790 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.007251 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.823199 B = 3860.540486 C = 4377.206924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.141 4.141 3 C 0.211 3.789 4 N -0.425 5.425 5 C -0.352 4.352 6 H 0.092 0.908 7 C 0.059 3.941 8 N -0.808 5.808 9 Si 0.896 3.104 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.549 6.549 15 C -0.145 4.145 16 C 0.531 3.469 17 O -0.500 6.500 18 O -0.506 6.506 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.131 4.131 25 H 0.194 0.806 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -11.404 -2.346 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.143 4.143 3 C 0.088 3.912 4 N -0.144 5.144 5 C -0.477 4.477 6 H 0.109 0.891 7 C -0.153 4.153 8 N -0.438 5.438 9 Si 0.721 3.279 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.429 6.429 15 C -0.149 4.149 16 C 0.373 3.627 17 O -0.387 6.387 18 O -0.317 6.317 19 C -0.076 4.076 20 C -0.166 4.166 21 C -0.171 4.171 22 C -0.081 4.081 23 C -0.172 4.172 24 C -0.188 4.188 25 H 0.211 0.789 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.983 -10.965 -2.054 12.218 hybrid contribution -1.291 0.737 -0.471 1.559 sum 3.692 -10.228 -2.525 11.164 Atomic orbital electron populations 1.24009 0.95083 1.03704 1.01020 1.22938 0.94314 0.97575 0.99452 1.18513 0.85126 0.99411 0.88170 1.43431 1.56188 1.05548 1.09260 1.19114 1.02583 0.79616 1.46437 0.89076 1.25412 0.94141 0.99357 0.96392 1.70461 0.98452 1.37373 1.37563 0.86418 0.79344 0.83479 0.78659 1.18914 1.20629 1.20904 1.18803 0.83926 0.83261 0.84606 1.90538 1.51901 1.78197 1.22301 1.21564 0.86703 0.96728 1.09947 1.21731 0.85131 0.74060 0.81789 1.90675 1.72590 1.49872 1.25547 1.84610 1.35172 1.72259 1.39612 1.21848 0.96973 0.94955 0.93866 1.21372 0.96196 0.99501 0.99519 1.21379 1.00581 0.93216 1.01909 1.21910 0.95124 0.98333 0.92778 1.21437 1.01115 0.95881 0.98789 1.21611 0.96990 0.98333 1.01824 0.78852 0.90163 0.89451 0.92466 0.74016 0.91014 0.93005 0.90932 0.92967 0.91681 0.91423 0.91034 0.91947 0.92559 0.90931 0.91723 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.00 17.86 29.55 0.53 -4.47 16 2 C -0.14 -3.39 9.35 -37.12 -0.35 -3.74 16 3 C 0.21 4.80 4.34 -6.83 -0.03 4.77 16 4 N -0.43 -10.74 2.16 -117.93 -0.26 -10.99 16 5 C -0.35 -9.66 8.58 -14.94 -0.13 -9.78 16 6 H 0.09 2.58 8.02 -52.48 -0.42 2.16 16 7 C 0.06 1.57 4.81 -17.47 -0.08 1.49 16 8 N -0.81 -22.24 9.93 55.50 0.55 -21.69 16 9 Si 0.90 20.34 29.67 -169.99 -5.04 15.30 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.51 12.42 5.26 -10.98 -0.06 12.36 16 14 O -0.55 -15.05 14.48 5.55 0.08 -14.97 16 15 C -0.14 -2.84 1.27 -156.81 -0.20 -3.04 16 16 C 0.53 10.29 4.16 36.00 0.15 10.44 16 17 O -0.50 -9.83 13.22 -18.75 -0.25 -10.08 16 18 O -0.51 -8.93 12.92 -39.28 -0.51 -9.43 16 19 C -0.08 -1.23 2.70 -154.47 -0.42 -1.65 16 20 C -0.11 -1.77 7.59 37.16 0.28 -1.49 16 21 C -0.11 -1.51 8.31 37.16 0.31 -1.20 16 22 C -0.08 -1.28 1.78 -154.47 -0.28 -1.56 16 23 C -0.12 -1.57 7.83 37.16 0.29 -1.28 16 24 C -0.13 -1.98 8.89 37.16 0.33 -1.65 16 25 H 0.19 3.75 7.80 -54.09 -0.42 3.32 16 26 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 27 H 0.09 1.81 4.30 -51.93 -0.22 1.59 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 4.96 9.10 45.56 0.41 5.37 16 30 H 0.07 1.28 7.81 -51.92 -0.41 0.87 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.30 4.80 -51.93 -0.25 1.05 16 33 H 0.05 0.71 5.34 -51.93 -0.28 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.07 1.03 7.76 -51.93 -0.40 0.63 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.76 5.65 -51.93 -0.29 0.47 16 39 H 0.07 1.10 5.33 -51.92 -0.28 0.83 16 40 H 0.06 0.78 7.97 -51.93 -0.41 0.37 16 41 H 0.07 1.26 6.35 -51.93 -0.33 0.93 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -33.37 325.59 -4.71 -38.08 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.54 Total: 9.67 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 0.35 Total: -0.79 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.30 Total: -32.68 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.67 Total: -34.48 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.04 Total: 15.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.37 -4.71 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588395577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.050 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds