Wall clock time and date at job start Tue Mar 31 2020 06:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47307 * 249.44147 * 3 2 1 5 5 C 1.37090 * 119.99879 * 277.60045 * 4 3 2 6 6 H 1.08003 * 119.99669 * 225.11310 * 5 4 3 7 7 C 1.38952 * 120.00375 * 45.11322 * 5 4 3 8 8 N 1.31410 * 119.99982 * 34.74958 * 7 5 4 9 9 Si 1.86799 * 119.99743 * 214.75192 * 7 5 4 10 10 H 1.48502 * 109.47617 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47133 * 120.00168 * 9 7 5 12 12 H 1.48503 * 109.47014 * 239.99552 * 9 7 5 13 13 C 1.34774 * 119.99729 * 97.59526 * 4 3 2 14 14 O 1.21287 * 120.00233 * 183.76154 * 13 4 3 15 15 C 1.50706 * 119.99997 * 3.76033 * 13 4 3 16 16 C 1.50697 * 115.55118 * 291.57690 * 15 13 4 17 17 O 1.20823 * 120.00126 * 102.31244 * 16 15 13 18 18 O 1.34237 * 119.99953 * 282.31231 * 16 15 13 19 19 C 1.52998 * 117.49708 * 145.90628 * 15 13 4 20 20 C 1.53004 * 117.49901 * 359.97438 * 19 15 13 21 21 C 1.53000 * 117.49972 * 145.02166 * 19 15 13 22 22 C 1.52998 * 117.49798 * 77.24667 * 15 13 4 23 23 C 1.52998 * 117.49999 * 214.97914 * 22 15 13 24 24 C 1.53003 * 117.49720 * 359.97244 * 22 15 13 25 25 H 4.40643 * 5.51430 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46626 * 129.44603 * 3 2 1 27 27 H 1.08999 * 109.47211 * 9.44862 * 3 2 1 28 28 H 0.96998 * 119.99508 * 179.97438 * 8 7 5 29 29 H 0.96696 * 116.99893 * 185.03378 * 18 16 15 30 30 H 1.09012 * 109.46773 * 76.48808 * 20 19 15 31 31 H 1.09003 * 109.47262 * 196.48482 * 20 19 15 32 32 H 1.08995 * 109.47299 * 316.49017 * 20 19 15 33 33 H 1.08996 * 109.46659 * 8.60909 * 21 19 15 34 34 H 1.09001 * 109.46821 * 128.60607 * 21 19 15 35 35 H 1.09004 * 109.46761 * 248.60696 * 21 19 15 36 36 H 1.08998 * 109.46997 * 75.67926 * 23 22 15 37 37 H 1.08997 * 109.47055 * 195.67902 * 23 22 15 38 38 H 1.08999 * 109.47081 * 315.67814 * 23 22 15 39 39 H 1.09007 * 109.46904 * 72.68841 * 24 22 15 40 40 H 1.09002 * 109.47024 * 192.67944 * 24 22 15 41 41 H 1.08999 * 109.47663 * 312.68549 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4859 1.2933 5 6 3.2140 1.8331 1.5341 6 1 4.0965 2.2472 1.9990 7 6 2.1596 2.6660 1.1801 8 7 0.9219 2.2335 1.2701 9 14 2.5014 4.4002 0.5760 10 1 3.9667 4.6415 0.5670 11 1 1.9645 4.5602 -0.7993 12 1 1.8448 5.3779 1.4806 13 6 3.5046 -0.3922 2.2462 14 8 3.8439 0.0072 3.3400 15 6 3.4973 -1.8704 1.9527 16 6 2.1363 -2.4880 1.7599 17 8 1.7376 -2.7359 0.6466 18 8 1.3670 -2.7629 2.8250 19 6 4.5745 -2.7283 2.6195 20 6 5.5769 -2.0198 3.5327 21 6 4.1876 -4.1479 3.0390 22 6 4.6519 -2.4309 1.1199 23 6 4.3365 -3.5760 0.1555 24 6 5.7252 -1.4477 0.6483 25 1 -1.0501 0.0001 -0.0002 26 1 3.0090 0.6538 -0.7937 27 1 3.0098 -1.0129 -0.1687 28 1 0.1859 2.8151 1.0233 29 1 0.5351 -3.2264 2.6577 30 1 5.1018 -1.7936 4.4874 31 1 6.4374 -2.6677 3.6996 32 1 5.9056 -1.0933 3.0620 33 1 3.1990 -4.3859 2.6465 34 1 4.9160 -4.8551 2.6423 35 1 4.1722 -4.2137 4.1269 36 1 3.8200 -3.1820 -0.7198 37 1 5.2648 -4.0552 -0.1555 38 1 3.7001 -4.3066 0.6547 39 1 6.3434 -1.1507 1.4956 40 1 6.3493 -1.9258 -0.1067 41 1 5.2478 -0.5663 0.2202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588395577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:29 Heat of formation + Delta-G solvation = -46.409785 kcal Electronic energy + Delta-G solvation = -25985.735012 eV Core-core repulsion = 22447.421999 eV Total energy + Delta-G solvation = -3538.313013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52620 -40.28924 -38.91420 -37.27225 -36.76694 -33.99990 -33.13871 -32.04574 -30.13958 -29.78212 -28.06946 -27.08145 -26.64238 -24.69841 -22.83967 -20.17460 -19.53061 -19.38966 -18.62241 -18.46886 -18.01745 -17.23126 -16.93114 -16.22260 -15.92625 -15.83141 -15.42936 -14.94514 -14.67806 -14.40495 -14.13631 -14.08025 -13.89287 -13.53872 -13.30931 -13.18070 -13.12818 -13.01870 -12.93327 -12.82241 -12.65290 -12.59256 -12.41355 -12.16468 -11.83167 -11.58580 -11.21623 -10.90386 -10.83273 -10.60778 -10.53276 -10.10677 -9.51136 -8.30831 -6.04018 1.05795 1.34055 1.41348 1.54823 1.75519 1.94975 2.18265 2.33329 2.39589 2.54948 2.89763 3.10043 3.49379 3.60789 3.82022 3.92641 4.05936 4.10899 4.23724 4.43991 4.51075 4.58085 4.67747 4.73412 4.77189 4.88084 4.92492 4.99279 5.02512 5.05069 5.11113 5.18171 5.26245 5.33374 5.40384 5.51803 5.54481 5.62702 6.23844 6.48456 6.97570 7.17123 7.20827 7.36511 8.02485 8.62856 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.007251 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.823199 B = 3860.540486 C = 4377.206924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.174 4.174 3 C 0.215 3.785 4 N -0.435 5.435 5 C -0.380 4.380 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.834 5.834 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.594 6.594 15 C -0.180 4.180 16 C 0.533 3.467 17 O -0.506 6.506 18 O -0.513 6.513 19 C -0.068 4.068 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.062 4.062 23 C -0.112 4.112 24 C -0.133 4.133 25 H 0.222 0.778 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.269 0.731 29 H 0.423 0.577 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -13.059 -3.493 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C 0.093 3.907 4 N -0.153 5.153 5 C -0.507 4.507 6 H 0.086 0.914 7 C -0.187 4.187 8 N -0.465 5.465 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.477 6.477 15 C -0.185 4.185 16 C 0.375 3.625 17 O -0.395 6.395 18 O -0.327 6.327 19 C -0.068 4.068 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.063 4.063 23 C -0.168 4.168 24 C -0.190 4.190 25 H 0.239 0.761 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.284 0.716 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.465 -12.640 -3.219 14.142 hybrid contribution -1.469 1.236 -0.034 1.920 sum 3.996 -11.405 -3.253 12.514 Atomic orbital electron populations 1.24763 0.96032 1.02746 0.99891 1.23368 0.95128 0.98531 1.00490 1.18556 0.84890 1.00262 0.87018 1.43574 1.56267 1.05142 1.10357 1.19090 1.02299 0.81365 1.47909 0.91438 1.26160 0.93704 1.02975 0.95877 1.70516 0.99063 1.38911 1.38045 0.85378 0.79191 0.78436 0.78244 1.18599 1.19496 1.20902 1.19464 0.82168 0.85438 0.83775 1.90490 1.53437 1.79820 1.23997 1.21449 0.88499 0.93777 1.14775 1.21644 0.85067 0.73990 0.81845 1.90656 1.72709 1.50382 1.25706 1.84567 1.36374 1.72446 1.39303 1.22108 0.94813 0.95727 0.94187 1.21324 0.97463 0.99389 0.98107 1.21430 1.01287 0.91570 1.02458 1.22139 0.92622 0.98328 0.93182 1.21476 1.02866 0.94892 0.97597 1.21659 0.97105 0.97676 1.02544 0.76148 0.90052 0.87660 0.92153 0.71606 0.93349 0.89169 0.93350 0.93325 0.88427 0.90888 0.91908 0.88421 0.92341 0.91508 0.88035 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -9.69 17.86 74.32 1.33 -8.36 16 2 C -0.17 -8.34 9.35 31.12 0.29 -8.05 16 3 C 0.22 9.92 4.34 84.57 0.37 10.29 16 4 N -0.44 -22.64 2.16 -645.41 -1.40 -24.04 16 5 C -0.38 -21.67 8.58 84.04 0.72 -20.95 16 6 H 0.07 4.06 8.02 -2.91 -0.02 4.04 16 7 C 0.02 1.23 4.81 84.93 0.41 1.64 16 8 N -0.83 -46.37 9.93 21.66 0.22 -46.16 16 9 Si 0.96 42.43 29.67 68.60 2.04 44.47 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.50 25.40 5.26 87.66 0.46 25.86 16 14 O -0.59 -34.18 14.48 -3.05 -0.04 -34.23 16 15 C -0.18 -7.03 1.27 -53.67 -0.07 -7.10 16 16 C 0.53 20.23 4.16 71.24 0.30 20.53 16 17 O -0.51 -19.35 13.22 21.97 0.29 -19.06 16 18 O -0.51 -17.76 12.92 -51.49 -0.67 -18.43 16 19 C -0.07 -2.10 2.70 -52.16 -0.14 -2.24 16 20 C -0.11 -3.40 7.59 71.98 0.55 -2.85 16 21 C -0.11 -2.61 8.31 71.98 0.60 -2.01 16 22 C -0.06 -1.86 1.78 -52.16 -0.09 -1.96 16 23 C -0.11 -2.66 7.83 71.98 0.56 -2.10 16 24 C -0.13 -3.87 8.89 71.98 0.64 -3.23 16 25 H 0.22 8.20 7.80 -4.41 -0.03 8.16 16 26 H 0.08 3.62 8.10 -2.38 -0.02 3.60 16 27 H 0.11 4.38 4.30 -2.39 -0.01 4.37 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.42 9.94 9.10 -74.06 -0.67 9.27 16 30 H 0.05 1.75 7.81 -2.38 -0.02 1.74 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.77 4.80 -2.39 -0.01 1.76 16 33 H 0.05 1.20 5.34 -2.39 -0.01 1.18 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.64 8.09 -2.38 -0.02 1.62 16 36 H 0.06 1.64 7.76 -2.39 -0.02 1.62 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.38 5.65 -2.39 -0.01 1.37 16 39 H 0.07 2.01 5.33 -2.38 -0.01 2.00 16 40 H 0.10 2.15 7.97 -2.39 -0.02 2.13 16 41 H 0.05 1.67 6.35 -2.39 -0.02 1.65 16 Total: -1.00 -74.45 325.59 6.74 -67.70 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.39 Total: 30.28 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.92 Total: -0.54 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.18 Total: -70.20 kcal Atomic # 8 Polarization: -71.30 SS G_CDS: -0.42 Total: -71.72 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.04 Total: 44.47 kcal Total: -74.45 6.74 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588395577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.294 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds