Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99879 * 2 1 4 4 N 1.46893 * 109.47171 * 123.15832 * 3 2 1 5 5 C 1.46897 * 111.00215 * 64.63381 * 4 3 2 6 6 C 1.50698 * 109.47262 * 66.04765 * 5 4 3 7 7 H 1.07993 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99594 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00072 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47181 * 89.99876 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00212 * 10 8 6 13 13 H 1.48506 * 109.47064 * 329.99618 * 10 8 6 14 14 C 1.46905 * 111.00177 * 300.67882 * 4 3 2 15 15 C 1.50700 * 109.47184 * 288.27769 * 14 4 3 16 16 C 1.34156 * 125.43072 * 90.55107 * 15 14 4 17 17 C 1.47053 * 105.95260 * 180.02562 * 16 15 14 18 18 C 1.47236 * 127.20268 * 179.97438 * 17 16 15 19 19 O 1.21531 * 119.99825 * 180.02562 * 18 17 16 20 20 O 1.34771 * 120.00065 * 0.02776 * 18 17 16 21 21 C 1.36496 * 105.59803 * 0.02562 * 17 16 15 22 22 C 1.50701 * 125.81121 * 180.02562 * 21 17 16 23 23 C 1.53006 * 109.46929 * 89.99920 * 22 21 17 24 24 O 1.33629 * 108.38113 * 359.97438 * 21 17 16 25 25 H 1.07998 * 119.99745 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00471 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99912 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47256 * 3.15606 * 3 2 1 29 29 H 1.08998 * 109.46955 * 243.15592 * 3 2 1 30 30 H 1.09005 * 109.47165 * 186.04557 * 5 4 3 31 31 H 1.09001 * 109.47160 * 306.04469 * 5 4 3 32 32 H 0.97005 * 119.99875 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47466 * 168.27136 * 14 4 3 34 34 H 1.09006 * 109.46816 * 48.27164 * 14 4 3 35 35 H 1.08012 * 127.02220 * 359.76162 * 16 15 14 36 36 H 0.96693 * 116.99857 * 180.02562 * 20 18 17 37 37 H 1.08992 * 109.47160 * 209.99535 * 22 21 17 38 38 H 1.08995 * 109.47040 * 330.00364 * 22 21 17 39 39 H 1.09000 * 109.47317 * 60.00149 * 23 22 21 40 40 H 1.08993 * 109.46992 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.46833 * 300.00336 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9643 1.3505 1.1594 5 6 4.0014 0.3148 1.0611 6 6 4.9046 0.6175 -0.1066 7 1 4.7263 1.4920 -0.7146 8 6 5.9586 -0.2221 -0.3987 9 7 6.7465 0.0419 -1.4181 10 14 6.2666 -1.7351 0.6526 11 1 5.5168 -2.8880 0.0925 12 1 7.7188 -2.0455 0.6599 13 1 5.8091 -1.4745 2.0412 14 6 2.2127 1.2253 2.4154 15 6 1.4401 2.4944 2.6671 16 6 0.1863 2.7363 2.2557 17 6 -0.1407 4.0894 2.7295 18 6 -1.4038 4.8202 2.5339 19 8 -1.5333 5.9413 2.9847 20 8 -2.4164 4.2458 1.8549 21 6 0.9723 4.5267 3.3877 22 6 1.1308 5.8672 4.0577 23 6 0.6747 5.7662 5.5147 24 8 1.8971 3.5634 3.3378 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3565 2.1329 0.0566 29 1 2.6470 1.3877 -0.9169 30 1 4.5880 0.2996 1.9798 31 1 3.5312 -0.6575 0.9143 32 1 7.4883 -0.5485 -1.6234 33 1 2.9063 1.0528 3.2383 34 1 1.5200 0.3868 2.3422 35 1 -0.4511 2.0741 1.6882 36 1 -3.2258 4.7646 1.7518 37 1 2.1778 6.1683 4.0248 38 1 0.5232 6.6076 3.5374 39 1 1.2823 5.0259 6.0351 40 1 0.7889 6.7359 5.9992 41 1 -0.3724 5.4650 5.5476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -53.519918 kcal Electronic energy + Delta-G solvation = -23640.916218 eV Core-core repulsion = 20102.294886 eV Total energy + Delta-G solvation = -3538.621331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.63632 -39.92956 -37.76668 -36.22433 -34.20609 -33.07764 -32.86946 -32.22265 -30.10510 -27.57691 -26.40142 -25.09314 -23.86330 -22.36901 -21.68049 -21.05766 -19.44536 -19.03040 -18.08610 -17.03951 -16.60652 -16.44301 -15.75194 -15.46676 -15.20053 -14.77799 -14.74441 -14.33695 -13.96105 -13.87632 -13.44144 -13.03344 -12.86402 -12.77994 -12.55918 -12.35115 -11.80734 -11.75007 -11.68851 -11.45973 -11.14562 -11.06884 -10.97236 -10.74544 -10.65659 -10.30865 -9.93413 -9.79057 -9.48334 -9.02260 -8.64082 -8.45522 -7.56261 -6.10156 -4.08179 1.10982 2.01762 2.56270 2.64690 3.00742 3.08224 3.23308 3.32196 3.32366 4.35469 4.36478 4.64094 4.85948 4.95261 5.04184 5.11492 5.21778 5.27376 5.29739 5.42691 5.47764 5.56168 5.65974 5.71835 5.75316 5.91462 5.92888 6.00217 6.05097 6.23273 6.35609 6.36853 6.50770 6.70984 6.81180 6.95087 7.05190 7.14047 7.50176 7.73124 7.82032 7.87797 8.56856 8.98130 9.50405 11.02837 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.004001 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.314361 B = 6996.914392 C = 7758.730307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.080 3.920 4 N -0.515 5.515 5 C 0.160 3.840 6 C -0.510 4.510 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.119 3.881 15 C 0.025 3.975 16 C -0.173 4.173 17 C -0.239 4.239 18 C 0.562 3.438 19 O -0.523 6.523 20 O -0.509 6.509 21 C 0.094 3.906 22 C -0.056 4.056 23 C -0.143 4.143 24 O -0.156 6.156 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.030 0.970 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 6.430 10.257 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.186 4.186 3 C -0.048 4.048 4 N -0.238 5.238 5 C 0.035 3.965 6 C -0.548 4.548 7 H 0.100 0.900 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.191 1.191 14 C -0.009 4.009 15 C -0.024 4.024 16 C -0.193 4.193 17 C -0.241 4.241 18 C 0.408 3.592 19 O -0.415 6.415 20 O -0.320 6.320 21 C 0.040 3.960 22 C -0.093 4.093 23 C -0.201 4.201 24 O -0.051 6.051 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.048 0.952 31 H 0.010 0.990 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.128 6.882 10.451 19.632 hybrid contribution -0.836 -1.480 0.139 1.705 sum -15.963 5.403 10.589 19.904 Atomic orbital electron populations 1.23770 0.95908 1.01121 1.03775 1.23867 0.96309 1.01249 0.97167 1.21423 0.94503 0.92705 0.96156 1.62199 1.11920 1.50721 0.98923 1.20271 0.89556 0.87995 0.98683 1.20971 1.10837 1.11339 1.11682 0.90046 1.24873 0.95708 0.97591 0.94972 1.69887 1.17535 1.38240 1.27997 0.86897 0.77746 0.83782 0.81519 1.20317 1.21098 1.19146 1.20639 0.96546 0.88033 0.95657 1.22421 0.93658 0.89165 0.97161 1.22613 0.96401 0.95376 1.04922 1.19989 0.93933 0.97676 1.12550 1.19678 0.82696 0.83070 0.73715 1.90855 1.82100 1.19725 1.48797 1.84609 1.26307 1.50991 1.70091 1.22791 0.86045 0.90965 0.96205 1.20433 1.04187 0.88373 0.96275 1.21696 1.01875 1.02556 0.93939 1.83798 1.40133 1.21995 1.59150 0.89184 0.88863 0.87142 0.91584 0.88083 0.95155 0.98997 0.92587 0.89337 0.91282 0.82278 0.73108 0.89354 0.87127 0.92274 0.91269 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 13.96 29.01 0.40 -2.38 16 2 C -0.17 -2.68 7.39 -36.03 -0.27 -2.95 16 3 C 0.08 1.45 5.43 -4.98 -0.03 1.43 16 4 N -0.52 -10.18 4.65 -238.96 -1.11 -11.30 16 5 C 0.16 3.65 3.63 -4.98 -0.02 3.63 16 6 C -0.51 -13.89 9.00 -34.44 -0.31 -14.20 16 7 H 0.08 2.44 7.37 -52.49 -0.39 2.05 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 10 Si 0.87 20.72 27.47 -169.99 -4.67 16.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.12 1.94 5.34 -4.97 -0.03 1.92 16 15 C 0.03 0.39 6.34 -35.75 -0.23 0.16 16 16 C -0.17 -2.48 9.72 -37.45 -0.36 -2.85 16 17 C -0.24 -3.37 6.32 -103.30 -0.65 -4.02 16 18 C 0.56 7.24 8.33 34.39 0.29 7.53 16 19 O -0.52 -7.30 15.63 -19.29 -0.30 -7.60 16 20 O -0.51 -5.13 13.34 -40.69 -0.54 -5.67 16 21 C 0.09 1.30 6.63 -34.94 -0.23 1.07 16 22 C -0.06 -0.61 5.94 -27.88 -0.17 -0.78 16 23 C -0.14 -1.35 9.90 37.16 0.37 -0.98 16 24 O -0.16 -2.45 10.52 7.71 0.08 -2.37 16 25 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 26 H 0.09 1.16 6.64 -52.49 -0.35 0.81 16 27 H 0.11 1.92 6.85 -52.49 -0.36 1.56 16 28 H 0.07 1.12 6.24 -51.93 -0.32 0.79 16 29 H 0.10 2.10 6.74 -51.93 -0.35 1.75 16 30 H 0.03 0.70 6.92 -51.93 -0.36 0.34 16 31 H -0.01 -0.17 5.80 -51.93 -0.30 -0.47 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.40 7.81 -51.93 -0.41 0.99 16 34 H 0.07 1.03 6.69 -51.93 -0.35 0.68 16 35 H 0.16 2.09 6.44 -52.48 -0.34 1.75 16 36 H 0.41 2.06 9.11 45.56 0.42 2.47 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.24 6.48 -51.93 -0.34 0.91 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -31.60 341.76 -6.67 -38.27 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.72 Total: 4.11 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.33 Total: -10.55 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.34 Total: -37.39 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.76 Total: -15.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -6.67 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.251 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds