Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99879 * 2 1 4 4 N 1.46893 * 109.47171 * 123.15832 * 3 2 1 5 5 C 1.46897 * 111.00215 * 64.63381 * 4 3 2 6 6 C 1.50698 * 109.47262 * 66.04765 * 5 4 3 7 7 H 1.07993 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99594 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00072 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47181 * 89.99876 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00212 * 10 8 6 13 13 H 1.48506 * 109.47064 * 329.99618 * 10 8 6 14 14 C 1.46905 * 111.00177 * 300.67882 * 4 3 2 15 15 C 1.50700 * 109.47184 * 288.27769 * 14 4 3 16 16 C 1.34156 * 125.43072 * 90.55107 * 15 14 4 17 17 C 1.47053 * 105.95260 * 180.02562 * 16 15 14 18 18 C 1.47236 * 127.20268 * 179.97438 * 17 16 15 19 19 O 1.21531 * 119.99825 * 180.02562 * 18 17 16 20 20 O 1.34771 * 120.00065 * 0.02776 * 18 17 16 21 21 C 1.36496 * 105.59803 * 0.02562 * 17 16 15 22 22 C 1.50701 * 125.81121 * 180.02562 * 21 17 16 23 23 C 1.53006 * 109.46929 * 89.99920 * 22 21 17 24 24 O 1.33629 * 108.38113 * 359.97438 * 21 17 16 25 25 H 1.07998 * 119.99745 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00471 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99912 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47256 * 3.15606 * 3 2 1 29 29 H 1.08998 * 109.46955 * 243.15592 * 3 2 1 30 30 H 1.09005 * 109.47165 * 186.04557 * 5 4 3 31 31 H 1.09001 * 109.47160 * 306.04469 * 5 4 3 32 32 H 0.97005 * 119.99875 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47466 * 168.27136 * 14 4 3 34 34 H 1.09006 * 109.46816 * 48.27164 * 14 4 3 35 35 H 1.08012 * 127.02220 * 359.76162 * 16 15 14 36 36 H 0.96693 * 116.99857 * 180.02562 * 20 18 17 37 37 H 1.08992 * 109.47160 * 209.99535 * 22 21 17 38 38 H 1.08995 * 109.47040 * 330.00364 * 22 21 17 39 39 H 1.09000 * 109.47317 * 60.00149 * 23 22 21 40 40 H 1.08993 * 109.46992 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.46833 * 300.00336 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9643 1.3505 1.1594 5 6 4.0014 0.3148 1.0611 6 6 4.9046 0.6175 -0.1066 7 1 4.7263 1.4920 -0.7146 8 6 5.9586 -0.2221 -0.3987 9 7 6.7465 0.0419 -1.4181 10 14 6.2666 -1.7351 0.6526 11 1 5.5168 -2.8880 0.0925 12 1 7.7188 -2.0455 0.6599 13 1 5.8091 -1.4745 2.0412 14 6 2.2127 1.2253 2.4154 15 6 1.4401 2.4944 2.6671 16 6 0.1863 2.7363 2.2557 17 6 -0.1407 4.0894 2.7295 18 6 -1.4038 4.8202 2.5339 19 8 -1.5333 5.9413 2.9847 20 8 -2.4164 4.2458 1.8549 21 6 0.9723 4.5267 3.3877 22 6 1.1308 5.8672 4.0577 23 6 0.6747 5.7662 5.5147 24 8 1.8971 3.5634 3.3378 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3565 2.1329 0.0566 29 1 2.6470 1.3877 -0.9169 30 1 4.5880 0.2996 1.9798 31 1 3.5312 -0.6575 0.9143 32 1 7.4883 -0.5485 -1.6234 33 1 2.9063 1.0528 3.2383 34 1 1.5200 0.3868 2.3422 35 1 -0.4511 2.0741 1.6882 36 1 -3.2258 4.7646 1.7518 37 1 2.1778 6.1683 4.0248 38 1 0.5232 6.6076 3.5374 39 1 1.2823 5.0259 6.0351 40 1 0.7889 6.7359 5.9992 41 1 -0.3724 5.4650 5.5476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -75.088337 kcal Electronic energy + Delta-G solvation = -23641.851495 eV Core-core repulsion = 20102.294886 eV Total energy + Delta-G solvation = -3539.556608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.74818 -40.87382 -39.22653 -37.11713 -35.14136 -34.89956 -34.03212 -33.70642 -31.44554 -29.25307 -27.64307 -26.06623 -25.36777 -23.49095 -22.86516 -22.46581 -20.56725 -20.34815 -19.04261 -18.90448 -17.81742 -17.60594 -16.82828 -16.58224 -16.55253 -16.24875 -16.11871 -15.60996 -15.26513 -15.06335 -14.51576 -14.35737 -14.26480 -13.98600 -13.81361 -13.46449 -13.41682 -12.92536 -12.61560 -12.59300 -12.53456 -12.48128 -12.26074 -12.12684 -11.84127 -11.77382 -11.60694 -11.52344 -10.90978 -10.77336 -10.29060 -9.59484 -9.06066 -8.25752 -6.29012 0.08091 0.87352 1.36168 1.38301 1.39622 1.49013 1.60590 1.99156 2.17722 2.36306 3.07899 3.24157 3.43713 3.65691 4.03925 4.08130 4.10335 4.20828 4.25801 4.30535 4.36178 4.41628 4.54307 4.58819 4.77274 4.87517 4.94160 4.95037 4.96497 5.05587 5.10880 5.20039 5.25007 5.29168 5.52891 5.56924 5.73557 5.80210 5.95646 6.02860 6.31617 6.60515 6.76989 7.00681 7.33930 8.91030 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.004001 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.314361 B = 6996.914392 C = 7758.730307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.196 4.196 3 C 0.089 3.911 4 N -0.537 5.537 5 C 0.172 3.828 6 C -0.513 4.513 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.245 1.245 14 C 0.125 3.875 15 C 0.003 3.997 16 C -0.161 4.161 17 C -0.255 4.255 18 C 0.566 3.434 19 O -0.538 6.538 20 O -0.503 6.503 21 C 0.092 3.908 22 C -0.056 4.056 23 C -0.138 4.138 24 O -0.173 6.173 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.174 0.826 36 H 0.433 0.567 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.497 5.654 12.067 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.216 4.216 3 C -0.038 4.038 4 N -0.259 5.259 5 C 0.046 3.954 6 C -0.551 4.551 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.768 3.232 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.168 1.168 14 C -0.003 4.003 15 C -0.045 4.045 16 C -0.181 4.181 17 C -0.257 4.257 18 C 0.413 3.587 19 O -0.431 6.431 20 O -0.317 6.317 21 C 0.038 3.962 22 C -0.093 4.093 23 C -0.195 4.195 24 O -0.068 6.068 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.295 0.705 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.488 6.117 12.264 22.218 hybrid contribution -0.267 -1.095 -0.494 1.230 sum -17.755 5.022 11.770 21.885 Atomic orbital electron populations 1.24014 0.94682 1.02902 0.98940 1.23525 0.97194 0.99291 1.01586 1.21207 0.94012 0.94681 0.93928 1.62021 1.12900 1.49971 1.01036 1.19984 0.89833 0.89297 0.96321 1.21215 1.11757 1.09644 1.12531 0.94682 1.25817 0.95370 1.01297 0.96336 1.70057 1.18582 1.40068 1.30362 0.85751 0.77574 0.79309 0.80538 1.19121 1.21116 1.16809 1.20600 0.96752 0.89253 0.93667 1.22312 0.94184 0.89312 0.98716 1.22776 0.95918 0.95516 1.03883 1.20238 0.94812 0.97833 1.12857 1.19473 0.82849 0.82676 0.73714 1.90851 1.82444 1.20256 1.49553 1.84548 1.26873 1.51192 1.69100 1.23384 0.85729 0.91334 0.95714 1.20579 1.04947 0.86795 0.96990 1.21675 1.01169 1.03802 0.92874 1.83776 1.40992 1.22483 1.59581 0.86792 0.87417 0.88553 0.90365 0.92274 0.95047 0.97880 0.92522 0.89102 0.89435 0.80912 0.70477 0.88273 0.87303 0.92187 0.89172 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 13.96 67.78 0.95 -2.98 16 2 C -0.20 -6.08 7.39 25.65 0.19 -5.89 16 3 C 0.09 3.29 5.43 85.56 0.46 3.75 16 4 N -0.54 -21.33 4.65 -909.94 -4.23 -25.56 16 5 C 0.17 7.84 3.63 85.56 0.31 8.15 16 6 C -0.51 -29.05 9.00 25.60 0.23 -28.82 16 7 H 0.03 2.25 7.37 -2.91 -0.02 2.23 16 8 C 0.01 0.51 5.47 84.66 0.46 0.97 16 9 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 10 Si 0.94 42.78 27.47 68.60 1.88 44.67 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 14 C 0.12 3.91 5.34 85.56 0.46 4.36 16 15 C 0.00 0.10 6.34 24.75 0.16 0.26 16 16 C -0.16 -4.30 9.72 23.65 0.23 -4.07 16 17 C -0.25 -6.78 6.32 -19.01 -0.12 -6.90 16 18 C 0.57 13.45 8.33 70.19 0.58 14.04 16 19 O -0.54 -14.11 15.63 19.73 0.31 -13.80 16 20 O -0.50 -8.72 13.34 -56.82 -0.76 -9.47 16 21 C 0.09 2.46 6.63 25.28 0.17 2.63 16 22 C -0.06 -1.16 5.94 29.85 0.18 -0.99 16 23 C -0.14 -2.36 9.90 71.98 0.71 -1.65 16 24 O -0.17 -5.31 10.52 4.67 0.05 -5.26 16 25 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.11 2.24 6.64 -2.91 -0.02 2.22 16 27 H 0.10 3.27 6.85 -2.91 -0.02 3.25 16 28 H 0.08 2.61 6.24 -2.39 -0.01 2.60 16 29 H 0.06 2.63 6.74 -2.39 -0.02 2.61 16 30 H 0.03 1.42 6.92 -2.38 -0.02 1.41 16 31 H 0.00 0.15 5.80 -2.39 -0.01 0.14 16 32 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 33 H 0.09 2.76 7.81 -2.39 -0.02 2.74 16 34 H 0.09 2.41 6.69 -2.38 -0.02 2.39 16 35 H 0.17 3.99 6.44 -2.90 -0.02 3.97 16 36 H 0.43 3.03 9.11 -74.06 -0.67 2.35 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 2.32 6.48 -2.39 -0.02 2.30 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -70.67 341.76 2.85 -67.82 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.33 Total: 17.47 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.97 Total: -17.14 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.93 Total: -84.29 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.40 Total: -28.54 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Total: -70.67 2.85 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.267 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds