Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47338 * 2 1 4 4 C 1.46900 * 110.99506 * 300.00098 * 3 2 1 5 5 C 1.53004 * 109.46961 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.47083 * 65.00108 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47335 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99832 * 179.97438 * 8 7 6 11 11 N 1.31508 * 119.99846 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99808 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46925 * 90.00253 * 12 10 8 14 14 H 1.48491 * 109.47311 * 210.00261 * 12 10 8 15 15 H 1.48503 * 109.46805 * 330.00265 * 12 10 8 16 16 C 1.50706 * 109.47260 * 239.99970 * 2 1 3 17 17 O 1.20825 * 119.99859 * 334.99395 * 16 2 1 18 18 O 1.34224 * 120.00295 * 155.00353 * 16 2 1 19 19 C 1.50698 * 109.47341 * 119.99846 * 2 1 3 20 20 C 1.38235 * 120.00161 * 239.73102 * 19 2 1 21 21 C 1.38236 * 120.00205 * 179.81222 * 20 19 2 22 22 C 1.38239 * 119.99637 * 0.38762 * 21 20 19 23 23 C 1.38230 * 120.00188 * 359.86065 * 22 21 20 24 24 C 1.38234 * 120.00187 * 359.95888 * 23 22 21 25 25 H 1.09003 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47167 * 299.99927 * 1 2 3 27 27 H 1.08999 * 109.47299 * 60.00194 * 1 2 3 28 28 H 1.00892 * 110.99757 * 63.94774 * 3 2 1 29 29 H 1.09006 * 109.47286 * 299.99659 * 4 3 2 30 30 H 1.09004 * 109.47779 * 59.99564 * 4 3 2 31 31 H 1.09006 * 109.47017 * 184.99757 * 5 4 3 32 32 H 1.08997 * 109.46819 * 304.99845 * 5 4 3 33 33 H 1.08999 * 109.47096 * 299.99772 * 7 6 5 34 34 H 1.09002 * 109.47085 * 59.99507 * 7 6 5 35 35 H 0.97004 * 119.99952 * 179.97438 * 11 10 8 36 36 H 0.96700 * 117.00196 * 179.97438 * 18 16 2 37 37 H 1.08002 * 120.00130 * 359.97438 * 20 19 2 38 38 H 1.08002 * 120.00322 * 180.23109 * 21 20 19 39 39 H 1.07999 * 119.99435 * 179.84240 * 22 21 20 40 40 H 1.08000 * 119.99668 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00270 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1098 -1.1877 5 6 2.0783 3.5449 -1.1528 6 8 3.5031 3.5294 -1.2597 7 6 4.1018 4.8268 -1.2365 8 6 5.5981 4.6918 -1.3544 9 1 6.0470 3.7132 -1.4391 10 6 6.3940 5.8177 -1.3552 11 7 5.8473 7.0094 -1.2526 12 14 8.2487 5.6504 -1.5021 13 1 8.6362 5.6785 -2.9354 14 1 8.9052 6.7757 -0.7897 15 1 8.6789 4.3638 -0.8981 16 6 2.0324 -0.7104 -1.2305 17 8 1.3397 -1.5363 -1.7763 18 8 3.2494 -0.4259 -1.7199 19 6 2.0324 -0.7104 1.2304 20 6 2.8317 -0.0402 2.1375 21 6 3.2894 -0.6906 3.2682 22 6 2.9542 -2.0137 3.4877 23 6 2.1591 -2.6854 2.5780 24 6 1.6984 -2.0339 1.4493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7502 1.8638 0.8462 29 1 1.9121 1.6106 -2.0860 30 1 0.4588 2.1244 -1.1961 31 1 1.6575 4.1078 -1.9859 32 1 1.7895 4.0159 -0.2132 33 1 3.7230 5.4168 -2.0711 34 1 3.8550 5.3241 -0.2985 35 1 6.4072 7.8015 -1.2528 36 1 3.5282 -0.9075 -2.5107 37 1 3.0966 0.9924 1.9642 38 1 3.9108 -0.1659 3.9788 39 1 3.3139 -2.5226 4.3698 40 1 1.8977 -3.7192 2.7494 41 1 1.0776 -2.5587 0.7384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589128667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -103.886920 kcal Electronic energy + Delta-G solvation = -23646.459140 eV Core-core repulsion = 20105.653731 eV Total energy + Delta-G solvation = -3540.805409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95858 -39.10432 -37.34448 -36.20237 -35.92114 -32.85920 -32.08381 -31.00634 -29.45303 -27.96507 -26.60480 -25.17079 -23.06579 -22.41028 -22.24607 -21.43035 -19.91422 -18.03746 -17.52018 -16.66948 -16.34570 -15.93776 -15.69008 -15.12675 -14.82627 -14.77664 -14.62721 -14.27399 -13.90083 -13.67097 -13.31249 -13.25628 -13.03693 -12.69555 -12.33701 -12.27660 -11.96243 -11.78746 -11.41280 -11.32289 -11.17731 -11.06499 -10.80319 -10.72561 -10.51887 -10.45243 -9.97440 -9.05029 -9.00118 -8.90809 -8.77473 -8.44075 -8.10793 -6.06692 -4.07276 1.14906 1.32768 2.17615 3.03112 3.33444 3.38375 3.44527 3.67572 3.88422 4.37411 4.38661 4.72325 4.81447 4.86391 4.91966 5.06355 5.18209 5.30064 5.32777 5.33575 5.43557 5.47383 5.56290 5.59606 5.81627 5.83909 5.96694 5.97765 6.05789 6.22537 6.33322 6.42920 6.46421 6.52783 6.86414 6.90935 7.13702 7.27509 7.47236 7.85764 7.98178 8.21274 8.65311 9.07721 9.57507 11.05034 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.003882 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.564042 B = 7210.407354 C = 7913.230957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.167 3.833 3 N -0.650 5.650 4 C 0.056 3.944 5 C 0.068 3.932 6 O -0.376 6.376 7 C 0.194 3.806 8 C -0.509 4.509 9 H 0.067 0.933 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.502 3.498 17 O -0.525 6.525 18 O -0.481 6.481 19 C -0.083 4.083 20 C -0.084 4.084 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.111 4.111 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.351 0.649 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.001 0.999 34 H 0.003 0.997 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.179 -16.523 6.819 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.074 3.926 3 N -0.284 5.284 4 C -0.072 4.072 5 C -0.010 4.010 6 O -0.296 6.296 7 C 0.119 3.881 8 C -0.547 4.547 9 H 0.086 0.914 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.734 3.266 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.196 1.196 16 C 0.343 3.657 17 O -0.414 6.414 18 O -0.289 6.289 19 C -0.084 4.084 20 C -0.102 4.102 21 C -0.139 4.139 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.130 4.130 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.172 0.828 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.261 0.739 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.705 -16.647 6.725 20.903 hybrid contribution 0.062 0.164 -0.408 0.445 sum -10.643 -16.482 6.317 20.611 Atomic orbital electron populations 1.22462 0.93080 1.04326 1.03124 1.19461 0.93435 0.90641 0.89103 1.60559 1.62714 0.99300 1.05822 1.22180 0.96198 0.95085 0.93775 1.22168 0.86146 0.93700 0.99031 1.87995 1.15194 1.31939 1.94425 1.20185 0.93367 0.79418 0.95118 1.21070 0.90361 0.93546 1.49741 0.91446 1.24938 0.99413 0.94885 0.95306 1.69965 1.35709 0.97636 1.50765 0.86359 0.84315 0.77789 0.78179 1.20555 1.21174 1.19576 1.23006 0.79141 0.79529 0.83978 1.90691 1.57773 1.33466 1.59459 1.84785 1.33665 1.64278 1.46174 1.19318 0.99928 0.94260 0.94860 1.21229 0.94754 1.01490 0.92712 1.21242 1.00044 0.94868 0.97760 1.21217 0.98058 0.94933 0.99223 1.21048 0.98755 0.99833 0.94633 1.21036 1.00018 0.93979 0.97944 0.90498 0.90749 0.91190 0.82754 0.90245 0.93940 0.93987 0.94581 0.98074 0.97896 0.92772 0.73881 0.83920 0.85615 0.86124 0.86064 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 7.58 37.16 0.28 -1.51 16 2 C 0.17 2.10 0.76 -133.90 -0.10 2.00 16 3 N -0.65 -9.03 4.81 -102.31 -0.49 -9.53 16 4 C 0.06 0.81 5.34 -3.82 -0.02 0.79 16 5 C 0.07 1.21 6.22 37.16 0.23 1.44 16 6 O -0.38 -8.97 10.27 -35.23 -0.36 -9.33 16 7 C 0.19 5.29 5.69 36.01 0.20 5.50 16 8 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 9 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 12 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.50 7.13 5.53 36.01 0.20 7.33 16 17 O -0.52 -8.02 16.85 -18.75 -0.32 -8.34 16 18 O -0.48 -6.87 12.48 -39.24 -0.49 -7.36 16 19 C -0.08 -1.02 4.76 -104.62 -0.50 -1.52 16 20 C -0.08 -1.03 9.14 -39.58 -0.36 -1.39 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 24 C -0.11 -1.26 8.82 -39.58 -0.35 -1.61 16 25 H 0.08 0.80 7.12 -51.93 -0.37 0.43 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 28 H 0.35 4.35 7.57 -39.30 -0.30 4.05 16 29 H 0.08 1.26 6.64 -51.93 -0.34 0.91 16 30 H 0.04 0.50 6.30 -51.93 -0.33 0.17 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 36 H 0.40 3.93 9.10 45.56 0.41 4.34 16 37 H 0.14 1.84 6.41 -52.49 -0.34 1.50 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.34 7.58 -52.49 -0.40 0.94 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -34.34 345.55 -7.69 -42.03 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.92 Total: 4.37 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.03 Total: -7.72 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.24 Total: -35.83 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.17 Total: -25.02 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.34 -7.69 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589128667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.860 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds