Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47338 * 2 1 4 4 C 1.46900 * 110.99506 * 300.00098 * 3 2 1 5 5 C 1.53004 * 109.46961 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.47083 * 65.00108 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47335 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99832 * 179.97438 * 8 7 6 11 11 N 1.31508 * 119.99846 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99808 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46925 * 90.00253 * 12 10 8 14 14 H 1.48491 * 109.47311 * 210.00261 * 12 10 8 15 15 H 1.48503 * 109.46805 * 330.00265 * 12 10 8 16 16 C 1.50706 * 109.47260 * 239.99970 * 2 1 3 17 17 O 1.20825 * 119.99859 * 334.99395 * 16 2 1 18 18 O 1.34224 * 120.00295 * 155.00353 * 16 2 1 19 19 C 1.50698 * 109.47341 * 119.99846 * 2 1 3 20 20 C 1.38235 * 120.00161 * 239.73102 * 19 2 1 21 21 C 1.38236 * 120.00205 * 179.81222 * 20 19 2 22 22 C 1.38239 * 119.99637 * 0.38762 * 21 20 19 23 23 C 1.38230 * 120.00188 * 359.86065 * 22 21 20 24 24 C 1.38234 * 120.00187 * 359.95888 * 23 22 21 25 25 H 1.09003 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47167 * 299.99927 * 1 2 3 27 27 H 1.08999 * 109.47299 * 60.00194 * 1 2 3 28 28 H 1.00892 * 110.99757 * 63.94774 * 3 2 1 29 29 H 1.09006 * 109.47286 * 299.99659 * 4 3 2 30 30 H 1.09004 * 109.47779 * 59.99564 * 4 3 2 31 31 H 1.09006 * 109.47017 * 184.99757 * 5 4 3 32 32 H 1.08997 * 109.46819 * 304.99845 * 5 4 3 33 33 H 1.08999 * 109.47096 * 299.99772 * 7 6 5 34 34 H 1.09002 * 109.47085 * 59.99507 * 7 6 5 35 35 H 0.97004 * 119.99952 * 179.97438 * 11 10 8 36 36 H 0.96700 * 117.00196 * 179.97438 * 18 16 2 37 37 H 1.08002 * 120.00130 * 359.97438 * 20 19 2 38 38 H 1.08002 * 120.00322 * 180.23109 * 21 20 19 39 39 H 1.07999 * 119.99435 * 179.84240 * 22 21 20 40 40 H 1.08000 * 119.99668 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00270 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1098 -1.1877 5 6 2.0783 3.5449 -1.1528 6 8 3.5031 3.5294 -1.2597 7 6 4.1018 4.8268 -1.2365 8 6 5.5981 4.6918 -1.3544 9 1 6.0470 3.7132 -1.4391 10 6 6.3940 5.8177 -1.3552 11 7 5.8473 7.0094 -1.2526 12 14 8.2487 5.6504 -1.5021 13 1 8.6362 5.6785 -2.9354 14 1 8.9052 6.7757 -0.7897 15 1 8.6789 4.3638 -0.8981 16 6 2.0324 -0.7104 -1.2305 17 8 1.3397 -1.5363 -1.7763 18 8 3.2494 -0.4259 -1.7199 19 6 2.0324 -0.7104 1.2304 20 6 2.8317 -0.0402 2.1375 21 6 3.2894 -0.6906 3.2682 22 6 2.9542 -2.0137 3.4877 23 6 2.1591 -2.6854 2.5780 24 6 1.6984 -2.0339 1.4493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7502 1.8638 0.8462 29 1 1.9121 1.6106 -2.0860 30 1 0.4588 2.1244 -1.1961 31 1 1.6575 4.1078 -1.9859 32 1 1.7895 4.0159 -0.2132 33 1 3.7230 5.4168 -2.0711 34 1 3.8550 5.3241 -0.2985 35 1 6.4072 7.8015 -1.2528 36 1 3.5282 -0.9075 -2.5107 37 1 3.0966 0.9924 1.9642 38 1 3.9108 -0.1659 3.9788 39 1 3.3139 -2.5226 4.3698 40 1 1.8977 -3.7192 2.7494 41 1 1.0776 -2.5587 0.7384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589128667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -127.556813 kcal Electronic energy + Delta-G solvation = -23647.485544 eV Core-core repulsion = 20105.653731 eV Total energy + Delta-G solvation = -3541.831812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98909 -40.02971 -38.80248 -37.48756 -37.14075 -34.92075 -33.32153 -31.84935 -30.50279 -29.48593 -28.27343 -26.21927 -24.48430 -24.02993 -23.26608 -22.59901 -20.91671 -19.15069 -18.71897 -18.29341 -17.75851 -17.43475 -16.84969 -16.43305 -16.40222 -16.00037 -15.73303 -15.52267 -15.11478 -14.75855 -14.71722 -14.38694 -14.18596 -13.73405 -13.66724 -13.40352 -13.14746 -13.02299 -12.91089 -12.70862 -12.55890 -12.54113 -12.28832 -12.16175 -11.94724 -11.69322 -11.55068 -11.21427 -10.82830 -10.14098 -9.83807 -9.75658 -9.46768 -8.28604 -6.39534 0.30881 0.49370 1.09205 1.41629 1.44030 1.56434 2.07419 2.37650 2.77949 2.91312 3.05404 3.24298 3.46884 3.80087 4.03527 4.16385 4.18165 4.22915 4.25612 4.32255 4.45362 4.50657 4.60077 4.61790 4.69532 4.73915 4.86420 4.96530 5.03339 5.04785 5.16477 5.24148 5.45587 5.54076 5.56311 5.59936 5.63542 5.86756 6.02426 6.08476 6.25415 6.61359 6.91238 6.97326 7.32658 8.83685 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.003882 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.564042 B = 7210.407354 C = 7913.230957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.169 3.831 3 N -0.665 5.665 4 C 0.067 3.933 5 C 0.059 3.941 6 O -0.392 6.392 7 C 0.209 3.791 8 C -0.542 4.542 9 H 0.059 0.941 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.979 3.021 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.266 1.266 16 C 0.500 3.500 17 O -0.540 6.540 18 O -0.497 6.497 19 C -0.094 4.094 20 C -0.102 4.102 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.359 0.641 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.048 0.952 33 H -0.018 1.018 34 H -0.014 1.014 35 H 0.270 0.730 36 H 0.418 0.582 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 -17.703 7.711 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.077 3.923 3 N -0.300 5.300 4 C -0.062 4.062 5 C -0.019 4.019 6 O -0.311 6.311 7 C 0.134 3.866 8 C -0.580 4.580 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.802 3.198 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.190 1.190 16 C 0.342 3.658 17 O -0.430 6.430 18 O -0.308 6.308 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.181 0.819 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.000 1.000 34 H 0.004 0.996 35 H 0.078 0.922 36 H 0.279 0.721 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.490 -17.838 7.612 22.049 hybrid contribution -0.069 0.486 -0.664 0.826 sum -10.559 -17.352 6.948 21.468 Atomic orbital electron populations 1.22445 0.91374 1.04712 1.03954 1.19521 0.94625 0.89520 0.88672 1.60445 1.63650 1.00092 1.05844 1.22049 0.97849 0.92642 0.93616 1.22510 0.82972 0.96497 0.99901 1.87950 1.18806 1.29865 1.94522 1.19785 0.92960 0.80596 0.93277 1.21378 0.91804 0.93625 1.51212 0.92301 1.25899 1.04796 0.94231 0.94137 1.70064 1.37883 0.98476 1.50684 0.85239 0.77603 0.78199 0.78720 1.19428 1.19904 1.19003 1.23368 0.78840 0.79342 0.84210 1.90673 1.58059 1.34205 1.60045 1.84766 1.33973 1.64846 1.47215 1.19343 1.00572 0.94821 0.94754 1.21221 0.95774 1.01215 0.93804 1.21480 1.00049 0.95619 0.97496 1.21551 0.97309 0.94466 0.99949 1.21388 0.97957 1.00974 0.93856 1.21147 1.00422 0.93664 0.98685 0.90356 0.89064 0.91113 0.81889 0.91705 0.90503 0.93322 0.93399 1.00017 0.99620 0.92151 0.72140 0.85264 0.84335 0.83407 0.83562 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 7.58 71.98 0.55 -2.71 16 2 C 0.17 4.17 0.76 2.04 0.00 4.17 16 3 N -0.66 -18.29 4.81 -477.61 -2.30 -20.59 16 4 C 0.07 1.90 5.34 86.30 0.46 2.36 16 5 C 0.06 2.09 6.22 71.98 0.45 2.54 16 6 O -0.39 -19.11 10.27 -148.98 -1.53 -20.64 16 7 C 0.21 11.79 5.69 71.24 0.41 12.19 16 8 C -0.54 -32.70 9.43 25.60 0.24 -32.46 16 9 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 10 C 0.01 0.44 5.46 84.66 0.46 0.90 16 11 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 12 Si 0.98 44.87 29.54 68.60 2.03 46.89 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 C 0.50 14.07 5.53 71.24 0.39 14.46 16 17 O -0.54 -16.26 16.85 21.97 0.37 -15.89 16 18 O -0.50 -14.32 12.48 -51.35 -0.64 -14.96 16 19 C -0.09 -2.26 4.76 -19.86 -0.09 -2.35 16 20 C -0.10 -2.47 9.14 22.27 0.20 -2.27 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.11 -1.97 10.05 22.27 0.22 -1.75 16 23 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.12 -2.58 8.82 22.27 0.20 -2.38 16 25 H 0.08 1.52 7.12 -2.39 -0.02 1.50 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.35 6.40 -2.39 -0.02 1.34 16 28 H 0.36 8.78 7.57 -89.70 -0.68 8.10 16 29 H 0.06 2.04 6.64 -2.38 -0.02 2.03 16 30 H 0.08 1.67 6.30 -2.39 -0.02 1.65 16 31 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.42 8.26 9.10 -74.06 -0.67 7.59 16 37 H 0.13 3.41 6.41 -2.91 -0.02 3.39 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.12 2.56 7.58 -2.91 -0.02 2.54 16 Total: -1.00 -73.65 345.55 1.85 -71.80 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.30 Total: 20.97 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 3.93 Total: -11.65 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.01 Total: -76.52 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -1.80 Total: -51.49 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.65 1.85 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589128667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.757 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds