Wall clock time and date at job start Tue Mar 31 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00460 * 2 1 4 4 C 1.38201 * 120.00189 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00072 * 359.74401 * 4 3 2 6 6 C 1.38214 * 119.99557 * 0.50252 * 5 4 3 7 7 C 1.50702 * 119.99724 * 179.76815 * 6 5 4 8 8 H 1.09003 * 109.47294 * 199.72870 * 7 6 5 9 9 N 1.46905 * 109.47206 * 319.73151 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 O 1.42897 * 109.46931 * 64.99951 * 11 10 9 13 13 C 1.42908 * 113.99340 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46672 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47568 * 120.00027 * 18 16 14 21 21 H 1.48507 * 109.47011 * 240.00018 * 18 16 14 22 22 C 1.50702 * 109.47188 * 79.72941 * 7 6 5 23 23 O 1.20819 * 120.00031 * 239.99992 * 22 7 6 24 24 O 1.34231 * 119.99421 * 59.99847 * 22 7 6 25 25 C 1.38212 * 119.99592 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46945 * 270.02692 * 1 2 3 27 27 H 1.09001 * 109.46543 * 30.02265 * 1 2 3 28 28 H 1.08993 * 109.47148 * 150.02455 * 1 2 3 29 29 H 1.07998 * 119.99671 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00148 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.00256 * 180.27926 * 5 4 3 32 32 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 35 35 H 1.08996 * 109.46698 * 184.99715 * 11 10 9 36 36 H 1.09000 * 109.46869 * 304.99619 * 11 10 9 37 37 H 1.08993 * 109.47338 * 299.99632 * 13 12 11 38 38 H 1.08996 * 109.47019 * 60.00173 * 13 12 11 39 39 H 0.97000 * 119.99603 * 180.02562 * 17 16 14 40 40 H 0.96702 * 116.99602 * 179.97438 * 24 22 7 41 41 H 1.08004 * 120.00099 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0013 7 6 4.3340 -2.5022 0.0024 8 1 3.6794 -3.3000 -0.3488 9 7 5.4980 -2.3964 -0.8875 10 6 5.9036 -3.7185 -1.3832 11 6 7.1163 -3.5679 -2.3039 12 8 8.2310 -3.0890 -1.5488 13 6 9.4220 -2.9131 -2.3188 14 6 10.5265 -2.4073 -1.4270 15 1 10.3380 -2.2375 -0.3773 16 6 11.7777 -2.1613 -1.9513 17 7 12.0071 -2.3676 -3.2297 18 14 13.1470 -1.5349 -0.8458 19 1 12.6351 -1.3858 0.5402 20 1 14.2736 -2.5024 -0.8565 21 1 13.6208 -0.2180 -1.3424 22 6 4.7983 -2.8130 1.4020 23 8 5.9777 -2.9340 1.6344 24 8 3.9013 -2.9554 2.3905 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0005 1.0277 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0114 32 1 6.2656 -1.9325 -0.4251 33 1 6.1651 -4.3581 -0.5401 34 1 5.0794 -4.1671 -1.9377 35 1 7.3625 -4.5353 -2.7414 36 1 6.8836 -2.8585 -3.0981 37 1 9.7159 -3.8672 -2.7563 38 1 9.2374 -2.1904 -3.1136 39 1 12.8875 -2.1948 -3.5985 40 1 4.2468 -3.1548 3.2714 41 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594398073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:52 Heat of formation + Delta-G solvation = -119.753249 kcal Electronic energy + Delta-G solvation = -23021.457504 eV Core-core repulsion = 19479.964079 eV Total energy + Delta-G solvation = -3541.493424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74254 -39.27169 -37.28182 -36.29878 -35.41095 -33.03260 -32.57517 -31.75018 -29.05637 -27.11089 -26.92598 -25.78448 -22.80555 -22.32907 -22.00055 -21.39441 -20.24010 -18.14116 -17.24392 -16.87646 -16.33002 -16.07391 -15.59377 -15.51521 -15.02380 -14.90063 -14.34999 -14.26977 -13.96395 -13.61961 -13.44974 -13.17668 -12.96917 -12.68279 -12.36535 -12.18429 -12.02075 -11.78273 -11.61317 -11.34266 -11.22463 -11.07152 -10.81705 -10.78005 -10.72528 -10.53311 -9.99424 -9.05664 -8.92792 -8.80410 -8.68819 -8.59781 -8.14133 -6.07818 -4.08882 1.18152 1.31641 2.11321 2.93343 3.31491 3.37792 3.45203 3.63405 4.13504 4.38201 4.52315 4.66795 4.75867 4.91648 4.97154 5.04670 5.14528 5.18754 5.28788 5.37426 5.38771 5.42677 5.55565 5.62613 5.70814 5.88022 6.00476 6.04013 6.13185 6.28137 6.39637 6.40191 6.45050 6.48441 6.86571 6.93303 7.13639 7.36700 7.47203 7.79284 7.83709 8.18832 8.60975 9.05282 9.55879 11.03825 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.003240 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.648620 B = 8639.580185 C = 8891.410779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.096 4.096 6 C -0.067 4.067 7 C 0.138 3.862 8 H 0.121 0.879 9 N -0.651 5.651 10 C 0.058 3.942 11 C 0.063 3.937 12 O -0.395 6.395 13 C 0.197 3.803 14 C -0.512 4.512 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.447 3.553 23 O -0.496 6.496 24 O -0.516 6.516 25 C -0.100 4.100 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.370 0.630 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.263 0.737 40 H 0.405 0.595 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.341 2.394 7.109 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.134 4.134 5 C -0.114 4.114 6 C -0.067 4.067 7 C 0.025 3.975 8 H 0.138 0.862 9 N -0.285 5.285 10 C -0.070 4.070 11 C -0.015 4.015 12 O -0.315 6.315 13 C 0.122 3.878 14 C -0.550 4.550 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.285 3.715 23 O -0.382 6.382 24 O -0.327 6.327 25 C -0.118 4.118 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.193 0.807 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.263 0.737 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.358 2.640 6.285 25.294 hybrid contribution 1.611 -0.304 1.474 2.205 sum -22.747 2.336 7.759 24.147 Atomic orbital electron populations 1.20765 0.91216 1.02695 1.02193 1.19819 0.95950 0.92998 1.00473 1.21043 0.94282 0.97435 1.00823 1.21134 0.94211 0.98062 1.00025 1.21053 1.00516 0.91721 0.98100 1.19242 0.93140 0.92906 1.01459 1.20284 0.95465 0.97301 0.84401 0.86165 1.60987 1.09824 1.20786 1.36922 1.22141 0.96816 0.89581 0.98494 1.22240 0.87175 0.98129 0.93925 1.87852 1.20098 1.86387 1.37188 1.20185 0.80700 0.95206 0.91666 1.21109 0.94015 1.43616 0.96262 0.91511 1.24947 0.98597 0.95703 0.95320 1.69979 1.22737 1.49149 1.12008 0.86297 0.81261 0.78355 0.80689 1.19483 1.20882 1.20843 1.24933 0.84714 0.72875 0.88933 1.90845 1.18397 1.45614 1.83328 1.84575 1.43367 1.82985 1.21734 1.20796 0.92858 0.97795 1.00374 0.91314 0.91654 0.91565 0.86231 0.85832 0.85597 0.80653 0.93877 0.90205 0.93832 0.93382 0.97820 0.97606 0.92764 0.73661 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.15 9.70 -39.59 -0.38 -1.53 16 4 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 5 C -0.10 -1.21 9.32 -39.58 -0.37 -1.57 16 6 C -0.07 -0.79 4.88 -104.62 -0.51 -1.30 16 7 C 0.14 1.71 2.70 -70.01 -0.19 1.52 16 8 H 0.12 1.21 7.66 -51.93 -0.40 0.81 16 9 N -0.65 -9.85 5.56 -109.18 -0.61 -10.46 16 10 C 0.06 0.89 5.80 -3.82 -0.02 0.87 16 11 C 0.06 1.20 6.28 37.16 0.23 1.43 16 12 O -0.40 -9.75 9.85 -35.23 -0.35 -10.10 16 13 C 0.20 5.52 5.69 36.01 0.20 5.72 16 14 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 15 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 18 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.45 5.99 7.43 36.01 0.27 6.26 16 23 O -0.50 -8.70 16.06 -18.74 -0.30 -9.00 16 24 O -0.52 -5.28 13.34 -39.26 -0.52 -5.80 16 25 C -0.10 -1.02 9.32 -39.59 -0.37 -1.39 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.71 7.26 -52.48 -0.38 1.33 16 32 H 0.37 6.61 6.66 -39.29 -0.26 6.35 16 33 H 0.04 0.71 7.62 -51.93 -0.40 0.31 16 34 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.40 2.63 9.10 45.56 0.41 3.05 16 41 H 0.12 1.01 8.04 -52.48 -0.42 0.58 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -34.88 354.42 -8.14 -43.02 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.21 Total: 4.08 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.21 Total: -7.79 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.13 Total: -37.10 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.17 Total: -24.90 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.88 -8.14 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.733 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds