Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00460 * 2 1 4 4 C 1.38201 * 120.00189 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00072 * 359.74401 * 4 3 2 6 6 C 1.38214 * 119.99557 * 0.50252 * 5 4 3 7 7 C 1.50702 * 119.99724 * 179.76815 * 6 5 4 8 8 H 1.09003 * 109.47294 * 199.72870 * 7 6 5 9 9 N 1.46905 * 109.47206 * 319.73151 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 O 1.42897 * 109.46931 * 64.99951 * 11 10 9 13 13 C 1.42908 * 113.99340 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46672 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47568 * 120.00027 * 18 16 14 21 21 H 1.48507 * 109.47011 * 240.00018 * 18 16 14 22 22 C 1.50702 * 109.47188 * 79.72941 * 7 6 5 23 23 O 1.20819 * 120.00031 * 239.99992 * 22 7 6 24 24 O 1.34231 * 119.99421 * 59.99847 * 22 7 6 25 25 C 1.38212 * 119.99592 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46945 * 270.02692 * 1 2 3 27 27 H 1.09001 * 109.46543 * 30.02265 * 1 2 3 28 28 H 1.08993 * 109.47148 * 150.02455 * 1 2 3 29 29 H 1.07998 * 119.99671 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00148 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.00256 * 180.27926 * 5 4 3 32 32 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 35 35 H 1.08996 * 109.46698 * 184.99715 * 11 10 9 36 36 H 1.09000 * 109.46869 * 304.99619 * 11 10 9 37 37 H 1.08993 * 109.47338 * 299.99632 * 13 12 11 38 38 H 1.08996 * 109.47019 * 60.00173 * 13 12 11 39 39 H 0.97000 * 119.99603 * 180.02562 * 17 16 14 40 40 H 0.96702 * 116.99602 * 179.97438 * 24 22 7 41 41 H 1.08004 * 120.00099 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0013 7 6 4.3340 -2.5022 0.0024 8 1 3.6794 -3.3000 -0.3488 9 7 5.4980 -2.3964 -0.8875 10 6 5.9036 -3.7185 -1.3832 11 6 7.1163 -3.5679 -2.3039 12 8 8.2310 -3.0890 -1.5488 13 6 9.4220 -2.9131 -2.3188 14 6 10.5265 -2.4073 -1.4270 15 1 10.3380 -2.2375 -0.3773 16 6 11.7777 -2.1613 -1.9513 17 7 12.0071 -2.3676 -3.2297 18 14 13.1470 -1.5349 -0.8458 19 1 12.6351 -1.3858 0.5402 20 1 14.2736 -2.5024 -0.8565 21 1 13.6208 -0.2180 -1.3424 22 6 4.7983 -2.8130 1.4020 23 8 5.9777 -2.9340 1.6344 24 8 3.9013 -2.9554 2.3905 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0005 1.0277 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0114 32 1 6.2656 -1.9325 -0.4251 33 1 6.1651 -4.3581 -0.5401 34 1 5.0794 -4.1671 -1.9377 35 1 7.3625 -4.5353 -2.7414 36 1 6.8836 -2.8585 -3.0981 37 1 9.7159 -3.8672 -2.7563 38 1 9.2374 -2.1904 -3.1136 39 1 12.8875 -2.1948 -3.5985 40 1 4.2468 -3.1548 3.2714 41 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594398073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = -144.311227 kcal Electronic energy + Delta-G solvation = -23022.522418 eV Core-core repulsion = 19479.964079 eV Total energy + Delta-G solvation = -3542.558338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77089 -40.11789 -38.88481 -37.48809 -36.63277 -34.96406 -33.70978 -32.73351 -30.42218 -28.96789 -27.65799 -27.04554 -24.55591 -23.73264 -22.92037 -22.65754 -21.12517 -19.16156 -18.71911 -18.26789 -17.73488 -17.41765 -17.03800 -16.80519 -16.36652 -16.15029 -15.96423 -15.22467 -15.13049 -14.99611 -14.51104 -14.30120 -13.96566 -13.79413 -13.62668 -13.24606 -13.17273 -12.89993 -12.84736 -12.73291 -12.66628 -12.63634 -12.47969 -12.14089 -11.91711 -11.82767 -11.74271 -11.28786 -10.90386 -10.25091 -9.83848 -9.67921 -9.48675 -8.34667 -6.46665 0.34949 0.51154 1.07333 1.36760 1.38397 1.53329 2.01945 2.32683 2.73890 2.98722 3.08442 3.21477 3.60497 3.82775 4.05083 4.11590 4.17106 4.21719 4.30025 4.35461 4.52613 4.55477 4.62125 4.71832 4.77583 4.82932 4.91573 4.93689 5.01109 5.15503 5.17016 5.35751 5.48992 5.52396 5.55857 5.58213 5.71579 5.82567 5.94018 6.01088 6.13129 6.51509 6.80595 6.87071 7.25220 8.77905 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.003240 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.648620 B = 8639.580185 C = 8891.410779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.077 4.077 7 C 0.140 3.860 8 H 0.151 0.849 9 N -0.658 5.658 10 C 0.068 3.932 11 C 0.053 3.947 12 O -0.411 6.411 13 C 0.212 3.788 14 C -0.548 4.548 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.269 1.269 22 C 0.455 3.545 23 O -0.546 6.546 24 O -0.503 6.503 25 C -0.102 4.102 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.350 0.650 33 H 0.030 0.970 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.049 0.951 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.271 0.729 40 H 0.423 0.577 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.381 2.582 7.775 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.078 4.078 7 C 0.028 3.972 8 H 0.168 0.832 9 N -0.290 5.290 10 C -0.061 4.061 11 C -0.024 4.024 12 O -0.331 6.331 13 C 0.137 3.863 14 C -0.585 4.585 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.194 1.194 21 H -0.194 1.194 22 C 0.296 3.704 23 O -0.436 6.436 24 O -0.314 6.314 25 C -0.120 4.120 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.171 0.829 33 H 0.049 0.951 34 H 0.141 0.859 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.004 0.996 38 H 0.005 0.995 39 H 0.080 0.920 40 H 0.284 0.716 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.458 2.814 6.956 27.501 hybrid contribution 2.086 -0.355 1.267 2.467 sum -24.371 2.458 8.223 25.838 Atomic orbital electron populations 1.20825 0.88886 1.03813 1.03173 1.20230 0.97650 0.92531 0.98881 1.21363 0.93725 0.98838 0.99889 1.21313 0.95186 0.97827 1.00167 1.21032 0.99635 0.93157 1.00301 1.19248 0.93970 0.92052 1.02497 1.20405 0.94549 0.98768 0.83516 0.83160 1.60996 1.09816 1.20324 1.37839 1.22145 0.96384 0.89771 0.97751 1.22593 0.86686 0.98340 0.94746 1.87820 1.20484 1.86853 1.37931 1.19789 0.81957 0.93510 0.91048 1.21392 0.95643 1.45380 0.96134 0.92598 1.25942 1.01052 0.95164 0.96989 1.70072 1.23916 1.49124 1.13701 0.85154 0.77621 0.78361 0.78363 1.19295 1.19393 1.19355 1.25070 0.84069 0.71463 0.89800 1.90835 1.20488 1.48120 1.84157 1.84519 1.42305 1.82166 1.22451 1.21072 0.92015 0.99258 0.99634 0.90259 0.90610 0.90477 0.83910 0.85050 0.88015 0.82911 0.95147 0.85885 0.92764 0.93272 0.99560 0.99530 0.91969 0.71612 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.09 -1.51 5.88 -19.87 -0.12 -1.63 16 3 C -0.12 -2.11 9.70 22.27 0.22 -1.90 16 4 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 5 C -0.12 -3.19 9.32 22.27 0.21 -2.98 16 6 C -0.08 -1.77 4.88 -19.87 -0.10 -1.87 16 7 C 0.14 3.34 2.70 43.42 0.12 3.45 16 8 H 0.15 2.61 7.66 -2.39 -0.02 2.59 16 9 N -0.66 -20.19 5.56 -499.33 -2.78 -22.97 16 10 C 0.07 2.05 5.80 86.30 0.50 2.55 16 11 C 0.05 2.06 6.28 71.98 0.45 2.51 16 12 O -0.41 -21.17 9.85 -148.98 -1.47 -22.64 16 13 C 0.21 12.44 5.69 71.24 0.41 12.85 16 14 C -0.55 -34.19 9.43 25.60 0.24 -33.95 16 15 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.98 46.11 29.54 68.60 2.03 48.14 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.45 12.09 7.43 71.24 0.53 12.61 16 23 O -0.55 -19.82 16.06 21.99 0.35 -19.47 16 24 O -0.50 -9.52 13.34 -51.43 -0.69 -10.21 16 25 C -0.10 -1.82 9.32 22.27 0.21 -1.61 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 28 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.10 3.05 7.26 -2.91 -0.02 3.03 16 32 H 0.35 13.28 6.66 -89.69 -0.60 12.68 16 33 H 0.03 1.00 7.62 -2.39 -0.02 0.98 16 34 H 0.12 2.64 8.05 -2.39 -0.02 2.62 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.42 4.90 9.10 -74.06 -0.67 4.22 16 41 H 0.15 1.86 8.04 -2.91 -0.02 1.83 16 Total: -1.00 -77.64 354.42 1.57 -76.07 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.23 Total: 19.96 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.06 Total: -11.97 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.49 Total: -79.89 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.80 Total: -52.31 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.64 1.57 -76.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.242 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds