Wall clock time and date at job start Tue Mar 31 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 120.00339 * 2 1 4 4 C 1.38219 * 120.00457 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99671 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00478 * 359.95817 * 5 4 3 7 7 C 1.50696 * 120.00368 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47151 * 159.99717 * 7 6 5 9 9 N 1.46906 * 109.46865 * 40.00164 * 7 6 5 10 10 C 1.46901 * 110.99793 * 155.00158 * 9 7 6 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47405 * 64.99669 * 11 10 9 13 13 C 1.42901 * 113.99649 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46545 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00589 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99649 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48497 * 109.47124 * 210.00019 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99950 * 18 16 14 22 22 C 1.50702 * 109.47065 * 280.00272 * 7 6 5 23 23 O 1.20832 * 119.99948 * 120.00173 * 22 7 6 24 24 O 1.34223 * 119.99734 * 299.99357 * 22 7 6 25 25 C 1.38221 * 119.99949 * 180.21139 * 2 1 3 26 26 H 1.08999 * 109.46824 * 90.00152 * 1 2 3 27 27 H 1.09007 * 109.46958 * 210.00004 * 1 2 3 28 28 H 1.08991 * 109.46956 * 330.00174 * 1 2 3 29 29 H 1.08000 * 119.99476 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99719 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.99857 * 179.97438 * 5 4 3 32 32 H 1.00899 * 110.99995 * 31.04556 * 9 7 6 33 33 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 34 34 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 35 35 H 1.09002 * 109.46642 * 184.99944 * 11 10 9 36 36 H 1.09002 * 109.47069 * 304.99474 * 11 10 9 37 37 H 1.08990 * 109.47463 * 299.99806 * 13 12 11 38 38 H 1.08992 * 109.47069 * 60.00902 * 13 12 11 39 39 H 0.97004 * 119.99079 * 180.02562 * 17 16 14 40 40 H 0.96702 * 117.00127 * 179.97438 * 24 22 7 41 41 H 1.07990 * 120.00118 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0003 8 1 3.6800 -3.2995 0.3530 9 7 5.4991 -2.3953 0.8889 10 6 5.9052 -3.7168 1.3855 11 6 7.1180 -3.5651 2.3059 12 8 6.7439 -2.8229 3.4684 13 6 7.8101 -2.6240 4.3989 14 6 7.3059 -1.8338 5.5789 15 1 6.2745 -1.5157 5.6149 16 6 8.1615 -1.5169 6.6127 17 7 7.7214 -0.8277 7.6427 18 14 9.9458 -2.0664 6.5501 19 1 10.7627 -1.0207 5.8834 20 1 10.4467 -2.2799 7.9316 21 1 10.0463 -3.3354 5.7854 22 6 4.7971 -2.8142 -1.3995 23 8 5.9764 -2.9354 -1.6329 24 8 3.8993 -2.9578 -2.3869 25 6 2.1981 -1.1970 -0.0044 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 0.0000 -0.0014 32 1 5.3142 -1.7630 1.6532 33 1 6.1659 -4.3573 0.5429 34 1 5.0816 -4.1649 1.9413 35 1 7.4738 -4.5515 2.6035 36 1 7.9114 -3.0368 1.7773 37 1 8.1799 -3.5909 4.7399 38 1 8.6181 -2.0763 3.9139 39 1 8.3235 -0.6045 8.3698 40 1 4.2440 -3.1572 -3.2681 41 1 1.6581 -2.1322 -0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594398074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:54 Heat of formation + Delta-G solvation = -112.428145 kcal Electronic energy + Delta-G solvation = -23016.276062 eV Core-core repulsion = 19475.100278 eV Total energy + Delta-G solvation = -3541.175784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63162 -39.29303 -37.42312 -36.29186 -35.54807 -33.01904 -32.55681 -31.78255 -29.20797 -27.63234 -26.97453 -26.02185 -22.87235 -21.94038 -21.88941 -21.42711 -20.36937 -18.11591 -17.03651 -16.87252 -16.56200 -16.05867 -15.84420 -15.49776 -15.02840 -14.93869 -14.42850 -14.38497 -14.01772 -13.74760 -13.48026 -13.22134 -12.94538 -12.81442 -12.38978 -12.37596 -12.16171 -11.94883 -11.63319 -11.50487 -11.27281 -11.11203 -10.94453 -10.75071 -10.64245 -10.52341 -9.86503 -9.19268 -8.93362 -8.85871 -8.71569 -8.50504 -8.47505 -6.11954 -4.10975 1.14313 1.30473 2.18691 2.83481 3.25761 3.32581 3.34346 3.61633 4.18160 4.35862 4.40875 4.65458 4.70918 4.77388 5.00140 5.05338 5.17617 5.19903 5.21229 5.36222 5.40297 5.43364 5.54481 5.56748 5.65911 5.85560 5.90057 6.00979 6.04105 6.17137 6.37565 6.40573 6.41490 6.46693 6.62088 6.85732 6.91323 7.01068 7.39334 7.59648 7.88406 7.99712 8.65271 8.98559 9.47497 11.01013 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003675 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.000002 B = 7617.024059 C = 8852.569371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.097 4.097 6 C -0.093 4.093 7 C 0.143 3.857 8 H 0.089 0.911 9 N -0.664 5.664 10 C 0.066 3.934 11 C 0.060 3.940 12 O -0.385 6.385 13 C 0.171 3.829 14 C -0.519 4.519 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.483 3.517 23 O -0.489 6.489 24 O -0.519 6.519 25 C -0.096 4.096 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.373 0.627 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.407 0.593 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 -1.414 -20.213 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.093 4.093 7 C 0.032 3.968 8 H 0.106 0.894 9 N -0.301 5.301 10 C -0.063 4.063 11 C -0.018 4.018 12 O -0.305 6.305 13 C 0.096 3.904 14 C -0.557 4.557 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C 0.322 3.678 23 O -0.375 6.375 24 O -0.330 6.330 25 C -0.115 4.115 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.197 0.803 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.265 0.735 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.928 -1.210 -20.152 23.449 hybrid contribution 0.920 -0.661 0.105 1.138 sum -11.008 -1.871 -20.048 22.947 Atomic orbital electron populations 1.20775 0.91084 1.02891 1.02197 1.19849 0.96090 0.92958 1.00268 1.21103 0.94353 0.97525 1.00092 1.21169 0.94217 0.98146 0.99859 1.21155 1.00957 0.91486 0.97889 1.19393 0.93414 0.93110 1.03431 1.19744 0.91963 0.96461 0.88679 0.89362 1.60026 1.33649 1.12698 1.23708 1.22067 0.97454 0.89961 0.96797 1.22333 0.96035 0.95785 0.87680 1.87831 1.37973 1.74202 1.30447 1.20576 0.86442 0.95214 0.88163 1.20886 0.99691 1.33944 1.01172 0.90020 1.24763 0.98532 0.94673 0.94962 1.69882 1.35934 1.38757 1.08828 0.86849 0.85379 0.79789 0.77723 1.19883 1.20818 1.19102 1.23382 0.84104 0.72874 0.87418 1.90717 1.18483 1.45030 1.83222 1.84534 1.43413 1.83385 1.21678 1.20850 0.92886 0.97925 0.99799 0.91275 0.91480 0.91511 0.86049 0.85663 0.84785 0.80271 0.90233 0.94080 0.93689 0.93029 0.98003 0.98227 0.92375 0.73514 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 5 C -0.10 -1.22 9.00 -39.59 -0.36 -1.58 16 6 C -0.09 -1.13 4.64 -104.62 -0.49 -1.61 16 7 C 0.14 1.77 2.73 -70.01 -0.19 1.58 16 8 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 9 N -0.66 -9.85 5.23 -109.18 -0.57 -10.42 16 10 C 0.07 0.98 5.80 -3.82 -0.02 0.96 16 11 C 0.06 1.06 6.28 37.16 0.23 1.30 16 12 O -0.39 -8.79 9.85 -35.23 -0.35 -9.13 16 13 C 0.17 4.36 4.76 36.01 0.17 4.53 16 14 C -0.52 -15.40 9.99 -34.44 -0.34 -15.75 16 15 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 16 C 0.07 2.14 5.47 -17.81 -0.10 2.04 16 17 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C 0.48 6.07 7.49 36.01 0.27 6.34 16 23 O -0.49 -7.68 16.68 -18.75 -0.31 -7.99 16 24 O -0.52 -4.89 13.34 -39.24 -0.52 -5.41 16 25 C -0.10 -1.04 9.33 -39.58 -0.37 -1.41 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.79 7.72 -52.49 -0.40 1.39 16 32 H 0.37 6.04 7.55 -39.29 -0.30 5.74 16 33 H 0.08 1.09 7.62 -51.93 -0.40 0.70 16 34 H 0.04 0.58 8.06 -51.93 -0.42 0.17 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.00 0.06 7.20 -51.93 -0.37 -0.32 16 38 H 0.00 0.00 7.57 -51.93 -0.39 -0.39 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.41 2.12 9.10 45.56 0.41 2.54 16 41 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -34.40 351.98 -7.80 -42.20 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.23 Total: 4.31 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.23 Total: -8.86 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.20 Total: -37.29 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.18 Total: -22.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.40 -7.80 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.225 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds