Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 120.00339 * 2 1 4 4 C 1.38219 * 120.00457 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99671 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00478 * 359.95817 * 5 4 3 7 7 C 1.50696 * 120.00368 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47151 * 159.99717 * 7 6 5 9 9 N 1.46906 * 109.46865 * 40.00164 * 7 6 5 10 10 C 1.46901 * 110.99793 * 155.00158 * 9 7 6 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47405 * 64.99669 * 11 10 9 13 13 C 1.42901 * 113.99649 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46545 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00589 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99649 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48497 * 109.47124 * 210.00019 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99950 * 18 16 14 22 22 C 1.50702 * 109.47065 * 280.00272 * 7 6 5 23 23 O 1.20832 * 119.99948 * 120.00173 * 22 7 6 24 24 O 1.34223 * 119.99734 * 299.99357 * 22 7 6 25 25 C 1.38221 * 119.99949 * 180.21139 * 2 1 3 26 26 H 1.08999 * 109.46824 * 90.00152 * 1 2 3 27 27 H 1.09007 * 109.46958 * 210.00004 * 1 2 3 28 28 H 1.08991 * 109.46956 * 330.00174 * 1 2 3 29 29 H 1.08000 * 119.99476 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99719 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.99857 * 179.97438 * 5 4 3 32 32 H 1.00899 * 110.99995 * 31.04556 * 9 7 6 33 33 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 34 34 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 35 35 H 1.09002 * 109.46642 * 184.99944 * 11 10 9 36 36 H 1.09002 * 109.47069 * 304.99474 * 11 10 9 37 37 H 1.08990 * 109.47463 * 299.99806 * 13 12 11 38 38 H 1.08992 * 109.47069 * 60.00902 * 13 12 11 39 39 H 0.97004 * 119.99079 * 180.02562 * 17 16 14 40 40 H 0.96702 * 117.00127 * 179.97438 * 24 22 7 41 41 H 1.07990 * 120.00118 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0003 8 1 3.6800 -3.2995 0.3530 9 7 5.4991 -2.3953 0.8889 10 6 5.9052 -3.7168 1.3855 11 6 7.1180 -3.5651 2.3059 12 8 6.7439 -2.8229 3.4684 13 6 7.8101 -2.6240 4.3989 14 6 7.3059 -1.8338 5.5789 15 1 6.2745 -1.5157 5.6149 16 6 8.1615 -1.5169 6.6127 17 7 7.7214 -0.8277 7.6427 18 14 9.9458 -2.0664 6.5501 19 1 10.7627 -1.0207 5.8834 20 1 10.4467 -2.2799 7.9316 21 1 10.0463 -3.3354 5.7854 22 6 4.7971 -2.8142 -1.3995 23 8 5.9764 -2.9354 -1.6329 24 8 3.8993 -2.9578 -2.3869 25 6 2.1981 -1.1970 -0.0044 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 0.0000 -0.0014 32 1 5.3142 -1.7630 1.6532 33 1 6.1659 -4.3573 0.5429 34 1 5.0816 -4.1649 1.9413 35 1 7.4738 -4.5515 2.6035 36 1 7.9114 -3.0368 1.7773 37 1 8.1799 -3.5909 4.7399 38 1 8.6181 -2.0763 3.9139 39 1 8.3235 -0.6045 8.3698 40 1 4.2440 -3.1572 -3.2681 41 1 1.6581 -2.1322 -0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594398074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -136.805042 kcal Electronic energy + Delta-G solvation = -23017.333123 eV Core-core repulsion = 19475.100278 eV Total energy + Delta-G solvation = -3542.232845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58427 -40.15560 -38.95389 -37.37193 -36.66016 -34.89406 -33.74920 -32.78293 -30.69562 -29.29736 -27.71123 -27.18332 -24.05965 -23.77161 -22.79157 -22.66623 -21.26289 -19.07154 -19.05353 -17.94491 -17.57750 -17.45828 -17.07377 -16.67193 -16.38879 -16.19902 -15.99802 -15.36896 -15.12809 -14.89569 -14.57818 -14.44133 -14.09761 -14.00406 -13.89620 -13.36125 -13.23261 -12.97793 -12.91232 -12.73168 -12.55087 -12.47712 -12.33858 -11.94616 -11.88618 -11.82713 -11.63326 -11.36483 -10.93053 -10.37729 -9.78580 -9.61806 -9.54415 -8.37601 -6.45050 0.28286 0.45758 1.21506 1.33550 1.35763 1.46567 1.95101 2.28976 2.73699 2.95332 3.04889 3.17637 3.47705 3.86874 4.01083 4.07980 4.15734 4.26317 4.30965 4.38166 4.49569 4.50000 4.56446 4.60154 4.72382 4.76774 4.84047 4.89203 4.97301 5.00102 5.10180 5.31615 5.43232 5.49714 5.52566 5.60055 5.66322 5.82592 5.93053 6.07512 6.16576 6.58341 6.71593 7.04009 7.19218 8.79311 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003675 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.000002 B = 7617.024059 C = 8852.569371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.102 4.102 7 C 0.143 3.857 8 H 0.108 0.892 9 N -0.677 5.677 10 C 0.073 3.927 11 C 0.054 3.946 12 O -0.403 6.403 13 C 0.181 3.819 14 C -0.543 4.543 15 H 0.033 0.967 16 C 0.015 3.985 17 N -0.941 5.941 18 Si 0.953 3.047 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.246 1.246 22 C 0.491 3.509 23 O -0.526 6.526 24 O -0.508 6.508 25 C -0.103 4.103 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.362 0.638 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.013 0.987 38 H 0.008 0.992 39 H 0.273 0.727 40 H 0.426 0.574 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -2.441 -21.513 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.103 4.103 7 C 0.031 3.969 8 H 0.125 0.875 9 N -0.312 5.312 10 C -0.055 4.055 11 C -0.023 4.023 12 O -0.323 6.323 13 C 0.106 3.894 14 C -0.581 4.581 15 H 0.051 0.949 16 C -0.183 4.183 17 N -0.580 5.580 18 Si 0.774 3.226 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.170 1.170 22 C 0.332 3.668 23 O -0.415 6.415 24 O -0.321 6.321 25 C -0.121 4.121 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.134 0.866 32 H 0.184 0.816 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.288 0.712 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.073 -2.254 -21.503 24.763 hybrid contribution 0.782 -0.290 0.441 0.943 sum -11.291 -2.543 -21.062 24.032 Atomic orbital electron populations 1.20830 0.88950 1.03706 1.03292 1.20248 0.97710 0.92601 0.98936 1.21422 0.94002 0.98780 0.99396 1.21382 0.95065 0.98135 0.99863 1.21142 1.00320 0.92614 0.99698 1.19435 0.94100 0.92619 1.04119 1.19806 0.91367 0.97353 0.88335 0.87493 1.59998 1.35318 1.12400 1.23493 1.22019 0.96503 0.90329 0.96675 1.22607 0.97564 0.95851 0.86290 1.87797 1.37531 1.75309 1.31668 1.20290 0.86892 0.94861 0.87398 1.21146 0.97947 1.35317 1.03701 0.94885 1.25791 1.04198 0.94276 0.94040 1.70030 1.38266 1.39920 1.09824 0.85646 0.78101 0.80282 0.78555 1.18643 1.19767 1.16983 1.23328 0.83684 0.71857 0.87890 1.90706 1.19935 1.46968 1.83862 1.84479 1.42472 1.82647 1.22504 1.21110 0.92362 0.99165 0.99492 0.89912 0.90783 0.90644 0.83827 0.84646 0.86575 0.81584 0.88687 0.93337 0.91925 0.93316 0.96975 0.97465 0.91811 0.71194 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.88 16 3 C -0.12 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 5 C -0.12 -3.11 9.00 22.27 0.20 -2.91 16 6 C -0.10 -2.45 4.64 -19.87 -0.09 -2.55 16 7 C 0.14 3.44 2.73 43.42 0.12 3.56 16 8 H 0.11 2.16 7.66 -2.39 -0.02 2.14 16 9 N -0.68 -20.18 5.23 -499.34 -2.61 -22.79 16 10 C 0.07 2.12 5.80 86.30 0.50 2.62 16 11 C 0.05 1.88 6.28 71.98 0.45 2.33 16 12 O -0.40 -18.52 9.85 -148.98 -1.47 -19.98 16 13 C 0.18 9.17 4.76 71.24 0.34 9.51 16 14 C -0.54 -33.14 9.99 25.60 0.26 -32.89 16 15 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 16 C 0.02 0.90 5.47 84.66 0.46 1.36 16 17 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 18 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 22 C 0.49 11.90 7.49 71.24 0.53 12.43 16 23 O -0.53 -16.30 16.68 21.95 0.37 -15.93 16 24 O -0.51 -8.64 13.34 -51.34 -0.69 -9.32 16 25 C -0.10 -2.09 9.33 22.27 0.21 -1.88 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 28 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.12 3.35 7.72 -2.91 -0.02 3.32 16 32 H 0.36 12.16 7.55 -89.69 -0.68 11.48 16 33 H 0.09 2.47 7.62 -2.39 -0.02 2.45 16 34 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 38 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.43 3.58 9.10 -74.06 -0.67 2.91 16 41 H 0.14 2.24 8.04 -2.92 -0.02 2.22 16 Total: -1.00 -75.75 351.98 1.44 -74.31 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.36 Total: 22.70 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.01 Total: -15.66 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -2.31 Total: -81.81 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.79 Total: -45.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -75.75 1.44 -74.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.500 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds