Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46898 * 2 1 4 4 N 1.46895 * 109.47728 * 59.99662 * 3 2 1 5 5 C 1.46901 * 111.00202 * 60.00004 * 4 3 2 6 6 C 1.52997 * 109.47286 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47682 * 59.99714 * 6 5 4 8 8 O 1.42909 * 109.46840 * 299.99806 * 6 5 4 9 9 C 1.50701 * 109.46913 * 180.02562 * 6 5 4 10 10 H 1.07993 * 120.00369 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99406 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00400 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99627 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47013 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47175 * 120.00028 * 13 11 9 16 16 H 1.48492 * 109.47275 * 240.00188 * 13 11 9 17 17 C 1.50701 * 109.47143 * 179.97438 * 3 2 1 18 18 O 1.20823 * 119.99738 * 24.99703 * 17 3 2 19 19 O 1.34224 * 120.00108 * 204.99589 * 17 3 2 20 20 C 1.50706 * 109.46812 * 299.99250 * 3 2 1 21 21 C 1.38238 * 119.99775 * 150.00437 * 20 3 2 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 3 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38233 * 120.00212 * 330.02482 * 20 3 2 26 26 H 1.09009 * 109.47251 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47998 * 300.00603 * 1 2 3 28 28 H 1.09002 * 109.46964 * 60.01032 * 1 2 3 29 29 H 1.08997 * 109.47560 * 239.99242 * 2 1 3 30 30 H 1.09002 * 109.46959 * 119.99525 * 2 1 3 31 31 H 1.00904 * 111.00410 * 183.95815 * 4 3 2 32 32 H 1.09000 * 109.46670 * 300.00178 * 5 4 3 33 33 H 1.09000 * 109.46994 * 59.99945 * 5 4 3 34 34 H 0.96697 * 113.99504 * 300.00306 * 8 6 5 35 35 H 0.97006 * 119.99951 * 180.02562 * 12 11 9 36 36 H 0.96701 * 117.00313 * 179.97438 * 19 17 3 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 3 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99956 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5502 2.1351 1.1993 5 6 2.0212 1.4691 2.4211 6 6 1.4916 2.2171 3.6462 7 1 0.4017 2.2166 3.6292 8 8 1.9677 3.5643 3.6243 9 6 1.9753 1.5342 4.8995 10 1 2.5978 0.6545 4.8293 11 6 1.6230 2.0326 6.1358 12 7 0.8646 3.1036 6.2214 13 14 2.2220 1.1858 7.6894 14 1 3.0534 0.0109 7.3236 15 1 3.0347 2.1367 8.4897 16 1 1.0547 0.7368 8.4899 17 6 3.5469 1.4425 0.0006 18 8 4.1512 0.4941 -0.4411 19 8 4.2178 2.4962 0.4919 20 6 1.5376 2.1528 -1.2306 21 6 1.3072 3.5154 -1.1965 22 6 0.8470 4.1670 -2.3255 23 6 0.6178 3.4561 -3.4887 24 6 0.8431 2.0927 -3.5212 25 6 1.3069 1.4417 -2.3934 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8196 3.1075 1.1907 32 1 1.6577 0.4416 2.4379 33 1 3.1111 1.4693 2.4379 34 1 2.9315 3.6410 3.6376 35 1 0.6171 3.4544 7.0912 36 1 5.1835 2.4502 0.4713 37 1 1.4868 4.0709 -0.2878 38 1 0.6667 5.2315 -2.2987 39 1 0.2586 3.9654 -4.3708 40 1 0.6598 1.5365 -4.4287 41 1 1.4862 0.3770 -2.4198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595298998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -113.245673 kcal Electronic energy + Delta-G solvation = -24521.211695 eV Core-core repulsion = 20980.000461 eV Total energy + Delta-G solvation = -3541.211235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97598 -39.09288 -37.03006 -36.14798 -35.31015 -32.30211 -32.04403 -31.06097 -30.38715 -28.30758 -26.44510 -24.23511 -22.93871 -22.57995 -22.19527 -20.59504 -19.30845 -17.94307 -17.47313 -17.05072 -16.79677 -15.78234 -15.19195 -15.08582 -14.64093 -14.57587 -14.30990 -13.96325 -13.69751 -13.49373 -13.25476 -12.98201 -12.66440 -12.41205 -12.23601 -11.78952 -11.63209 -11.44312 -11.33105 -11.18548 -11.02980 -10.94530 -10.87168 -10.74308 -10.52532 -10.35536 -10.08500 -9.06162 -8.91153 -8.81760 -8.59415 -8.26042 -8.03278 -6.02780 -4.21063 1.22499 1.39701 2.28224 3.07393 3.25556 3.34118 3.37284 3.80792 4.26367 4.44052 4.65547 4.75546 4.96234 5.01775 5.10384 5.24540 5.27833 5.40586 5.52182 5.58426 5.67796 5.86821 5.93267 5.97724 6.06011 6.15191 6.16865 6.28968 6.36104 6.43700 6.49315 6.54035 6.55829 6.64250 6.84481 6.94474 7.25557 7.64599 7.75220 7.90153 7.96052 8.17771 8.82047 9.35721 9.56084 11.01416 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004358 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.391814 B = 6422.995426 C = 6647.332593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.173 3.827 4 N -0.653 5.653 5 C 0.027 3.973 6 C 0.236 3.764 7 H 0.065 0.935 8 O -0.564 6.564 9 C -0.573 4.573 10 H 0.054 0.946 11 C 0.081 3.919 12 N -0.857 5.857 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.458 3.542 18 O -0.520 6.520 19 O -0.510 6.510 20 C -0.071 4.071 21 C -0.090 4.090 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.104 4.104 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.355 0.645 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.342 0.658 35 H 0.260 0.740 36 H 0.405 0.595 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -0.648 -17.553 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.079 3.921 4 N -0.288 5.288 5 C -0.101 4.101 6 C 0.178 3.822 7 H 0.083 0.917 8 O -0.366 6.366 9 C -0.611 4.611 10 H 0.073 0.927 11 C -0.125 4.125 12 N -0.492 5.492 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.298 3.702 18 O -0.407 6.407 19 O -0.321 6.321 20 C -0.072 4.072 21 C -0.108 4.108 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.178 0.822 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.186 0.814 35 H 0.070 0.930 36 H 0.263 0.737 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.183 -0.945 -17.539 17.565 hybrid contribution 2.605 -0.456 0.995 2.825 sum 2.422 -1.401 -16.544 16.779 Atomic orbital electron populations 1.21721 0.93568 1.01171 1.03643 1.21543 0.97777 0.91540 1.03109 1.19920 0.82783 0.97402 0.92028 1.60748 1.61301 1.07160 0.99560 1.23079 0.96805 0.99657 0.90581 1.19380 0.95683 0.79148 0.87959 0.91688 1.86581 1.23465 1.29784 1.96767 1.21632 1.34355 1.13686 0.91476 0.92729 1.25007 0.94113 0.94392 0.99009 1.70087 1.34073 1.20898 1.24165 0.86632 0.78728 0.79667 0.83439 1.19766 1.20906 1.20824 1.25096 0.93158 0.79290 0.72630 1.90653 1.70718 1.35632 1.43686 1.84592 1.26345 1.44735 1.76389 1.19340 1.00889 0.93859 0.93108 1.21086 0.97409 0.93727 0.98587 1.21146 0.99810 1.00071 0.92920 1.21174 0.99985 0.94404 0.98080 1.21078 1.00426 0.94740 0.98121 1.21123 0.98637 1.00231 0.92272 0.93033 0.90486 0.92554 0.90827 0.90737 0.82209 0.90985 0.95971 0.81442 0.93024 0.73663 0.85130 0.85822 0.86213 0.86060 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.43 37.16 0.35 -1.59 16 2 C -0.10 -1.47 3.64 -26.73 -0.10 -1.57 16 3 C 0.17 2.60 0.50 -133.91 -0.07 2.53 16 4 N -0.65 -11.06 4.96 -102.33 -0.51 -11.57 16 5 C 0.03 0.54 4.60 -3.83 -0.02 0.52 16 6 C 0.24 5.76 3.10 -27.88 -0.09 5.67 16 7 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 8 O -0.56 -13.79 12.07 -35.23 -0.43 -14.21 16 9 C -0.57 -15.42 8.76 -34.44 -0.30 -15.72 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 11 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 12 N -0.86 -24.94 12.84 55.43 0.71 -24.23 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.46 7.23 5.88 36.01 0.21 7.44 16 18 O -0.52 -9.15 16.85 -18.75 -0.32 -9.47 16 19 O -0.51 -7.00 12.22 -39.24 -0.48 -7.48 16 20 C -0.07 -0.98 4.06 -104.62 -0.43 -1.40 16 21 C -0.09 -1.18 9.28 -39.58 -0.37 -1.54 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.10 -1.27 7.77 -39.58 -0.31 -1.58 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 28 H 0.06 0.72 6.17 -51.93 -0.32 0.40 16 29 H 0.07 0.99 6.24 -51.93 -0.32 0.66 16 30 H 0.07 1.17 6.40 -51.93 -0.33 0.83 16 31 H 0.36 6.10 5.80 -39.29 -0.23 5.87 16 32 H 0.07 1.43 6.30 -51.93 -0.33 1.11 16 33 H 0.02 0.44 6.64 -51.93 -0.34 0.10 16 34 H 0.34 7.52 9.04 45.56 0.41 7.94 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.40 3.85 9.10 45.56 0.41 4.27 16 37 H 0.13 1.74 6.28 -52.48 -0.33 1.41 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.44 6.16 -52.49 -0.32 1.12 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -31.72 334.61 -7.15 -38.87 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -3.75 Total: 17.27 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.40 Total: -10.17 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.20 Total: -35.80 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.22 Total: -31.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.72 -7.15 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595298998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.375 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds