Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46898 * 2 1 4 4 N 1.46895 * 109.47728 * 59.99662 * 3 2 1 5 5 C 1.46901 * 111.00202 * 60.00004 * 4 3 2 6 6 C 1.52997 * 109.47286 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47682 * 59.99714 * 6 5 4 8 8 O 1.42909 * 109.46840 * 299.99806 * 6 5 4 9 9 C 1.50701 * 109.46913 * 180.02562 * 6 5 4 10 10 H 1.07993 * 120.00369 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99406 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00400 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99627 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47013 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47175 * 120.00028 * 13 11 9 16 16 H 1.48492 * 109.47275 * 240.00188 * 13 11 9 17 17 C 1.50701 * 109.47143 * 179.97438 * 3 2 1 18 18 O 1.20823 * 119.99738 * 24.99703 * 17 3 2 19 19 O 1.34224 * 120.00108 * 204.99589 * 17 3 2 20 20 C 1.50706 * 109.46812 * 299.99250 * 3 2 1 21 21 C 1.38238 * 119.99775 * 150.00437 * 20 3 2 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 3 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38233 * 120.00212 * 330.02482 * 20 3 2 26 26 H 1.09009 * 109.47251 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47998 * 300.00603 * 1 2 3 28 28 H 1.09002 * 109.46964 * 60.01032 * 1 2 3 29 29 H 1.08997 * 109.47560 * 239.99242 * 2 1 3 30 30 H 1.09002 * 109.46959 * 119.99525 * 2 1 3 31 31 H 1.00904 * 111.00410 * 183.95815 * 4 3 2 32 32 H 1.09000 * 109.46670 * 300.00178 * 5 4 3 33 33 H 1.09000 * 109.46994 * 59.99945 * 5 4 3 34 34 H 0.96697 * 113.99504 * 300.00306 * 8 6 5 35 35 H 0.97006 * 119.99951 * 180.02562 * 12 11 9 36 36 H 0.96701 * 117.00313 * 179.97438 * 19 17 3 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 3 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99956 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5502 2.1351 1.1993 5 6 2.0212 1.4691 2.4211 6 6 1.4916 2.2171 3.6462 7 1 0.4017 2.2166 3.6292 8 8 1.9677 3.5643 3.6243 9 6 1.9753 1.5342 4.8995 10 1 2.5978 0.6545 4.8293 11 6 1.6230 2.0326 6.1358 12 7 0.8646 3.1036 6.2214 13 14 2.2220 1.1858 7.6894 14 1 3.0534 0.0109 7.3236 15 1 3.0347 2.1367 8.4897 16 1 1.0547 0.7368 8.4899 17 6 3.5469 1.4425 0.0006 18 8 4.1512 0.4941 -0.4411 19 8 4.2178 2.4962 0.4919 20 6 1.5376 2.1528 -1.2306 21 6 1.3072 3.5154 -1.1965 22 6 0.8470 4.1670 -2.3255 23 6 0.6178 3.4561 -3.4887 24 6 0.8431 2.0927 -3.5212 25 6 1.3069 1.4417 -2.3934 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8196 3.1075 1.1907 32 1 1.6577 0.4416 2.4379 33 1 3.1111 1.4693 2.4379 34 1 2.9315 3.6410 3.6376 35 1 0.6171 3.4544 7.0912 36 1 5.1835 2.4502 0.4713 37 1 1.4868 4.0709 -0.2878 38 1 0.6667 5.2315 -2.2987 39 1 0.2586 3.9654 -4.3708 40 1 0.6598 1.5365 -4.4287 41 1 1.4862 0.3770 -2.4198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595298998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -136.347920 kcal Electronic energy + Delta-G solvation = -24522.213484 eV Core-core repulsion = 20980.000461 eV Total energy + Delta-G solvation = -3542.213023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15706 -40.10787 -38.51540 -37.38215 -36.88689 -34.26748 -33.50282 -32.10382 -31.33773 -29.93600 -27.89447 -25.92395 -24.12360 -23.70170 -23.13328 -22.28175 -20.48071 -19.26190 -18.87111 -18.60919 -18.08763 -16.90772 -16.66642 -16.45160 -16.23384 -16.09627 -15.63475 -15.14477 -14.96231 -14.87967 -14.65766 -14.14854 -13.89805 -13.74488 -13.38536 -13.19497 -13.09645 -12.85905 -12.78863 -12.70117 -12.61627 -12.41716 -12.13452 -12.06213 -12.00800 -11.59242 -11.54270 -11.03024 -10.71282 -10.18590 -9.79022 -9.76600 -9.46127 -8.13583 -6.38990 0.30756 0.52014 1.05944 1.39222 1.41250 1.52539 1.98124 2.38175 2.89454 3.06550 3.13362 3.51720 3.65622 4.05785 4.15495 4.17753 4.27473 4.30348 4.36776 4.40329 4.48752 4.56844 4.64254 4.68115 4.81676 5.00475 5.03775 5.09828 5.16758 5.20420 5.42013 5.50927 5.54805 5.59895 5.62447 5.63818 5.72908 5.92366 6.07421 6.10076 6.35743 6.73289 6.83624 7.33806 7.54837 8.91011 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004358 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.391814 B = 6422.995426 C = 6647.332593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C 0.174 3.826 4 N -0.650 5.650 5 C 0.050 3.950 6 C 0.240 3.760 7 H 0.028 0.972 8 O -0.574 6.574 9 C -0.587 4.587 10 H 0.055 0.945 11 C 0.031 3.969 12 N -0.895 5.895 13 Si 0.957 3.043 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.459 3.541 18 O -0.541 6.541 19 O -0.510 6.510 20 C -0.088 4.088 21 C -0.109 4.109 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.354 0.646 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.353 0.647 35 H 0.261 0.739 36 H 0.423 0.577 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -1.009 -19.123 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 C 0.080 3.920 4 N -0.285 5.285 5 C -0.079 4.079 6 C 0.182 3.818 7 H 0.046 0.954 8 O -0.377 6.377 9 C -0.625 4.625 10 H 0.073 0.927 11 C -0.172 4.172 12 N -0.532 5.532 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.204 1.204 17 C 0.300 3.700 18 O -0.430 6.430 19 O -0.323 6.323 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.133 4.133 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.198 0.802 35 H 0.070 0.930 36 H 0.284 0.716 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.117 -1.303 -19.117 19.161 hybrid contribution 2.523 -0.276 1.388 2.892 sum 2.639 -1.579 -17.729 17.994 Atomic orbital electron populations 1.21637 0.92866 1.02011 1.02716 1.21560 0.98324 0.91167 1.02876 1.19959 0.82619 0.97685 0.91732 1.60650 1.61428 1.07002 0.99374 1.22609 0.96270 0.98847 0.90162 1.19135 0.93712 0.79439 0.89498 0.95382 1.86520 1.24472 1.29844 1.96900 1.22001 1.34080 1.13726 0.92723 0.92686 1.25819 0.94168 0.94954 1.02300 1.70213 1.35500 1.22522 1.24996 0.85558 0.78254 0.78689 0.79342 1.19056 1.20425 1.20432 1.25187 0.93488 0.79168 0.72183 1.90638 1.71174 1.36381 1.44838 1.84556 1.28024 1.43934 1.75769 1.19279 1.02474 0.94167 0.92961 1.21119 0.98762 0.93723 0.99123 1.21418 0.99145 1.01152 0.92645 1.21564 0.98611 0.94424 0.98599 1.21440 0.99050 0.95164 0.98442 1.21271 0.98998 1.00610 0.92372 0.91324 0.93042 0.91710 0.89545 0.92373 0.82367 0.91263 0.96115 0.80230 0.92951 0.71572 0.86323 0.84018 0.83172 0.83249 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.43 71.98 0.68 -2.91 16 2 C -0.10 -2.91 3.64 30.59 0.11 -2.79 16 3 C 0.17 5.21 0.50 2.04 0.00 5.21 16 4 N -0.65 -22.50 4.96 -477.65 -2.37 -24.87 16 5 C 0.05 2.03 4.60 86.30 0.40 2.42 16 6 C 0.24 12.06 3.10 29.85 0.09 12.15 16 7 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 8 O -0.57 -28.71 12.07 -148.98 -1.80 -30.51 16 9 C -0.59 -32.00 8.76 25.60 0.22 -31.77 16 10 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 11 C 0.03 1.69 5.40 84.66 0.46 2.15 16 12 N -0.90 -52.99 12.84 21.45 0.28 -52.72 16 13 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 C 0.46 14.33 5.88 71.24 0.42 14.75 16 18 O -0.54 -18.79 16.85 21.97 0.37 -18.42 16 19 O -0.51 -13.77 12.22 -51.36 -0.63 -14.40 16 20 C -0.09 -2.35 4.06 -19.86 -0.08 -2.43 16 21 C -0.11 -2.79 9.28 22.27 0.21 -2.58 16 22 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 23 C -0.11 -1.96 10.05 22.27 0.22 -1.74 16 24 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 25 C -0.11 -2.58 7.77 22.27 0.17 -2.41 16 26 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 28 H 0.06 1.60 6.17 -2.39 -0.01 1.58 16 29 H 0.09 2.24 6.24 -2.39 -0.01 2.22 16 30 H 0.06 1.83 6.40 -2.39 -0.02 1.82 16 31 H 0.35 12.46 5.80 -89.69 -0.52 11.94 16 32 H 0.07 2.83 6.30 -2.39 -0.02 2.82 16 33 H 0.02 0.84 6.64 -2.39 -0.02 0.82 16 34 H 0.35 15.74 9.04 -74.06 -0.67 15.07 16 35 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.42 7.68 9.10 -74.06 -0.67 7.00 16 37 H 0.12 3.23 6.28 -2.91 -0.02 3.21 16 38 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.13 2.75 6.16 -2.91 -0.02 2.73 16 Total: -1.00 -68.18 334.61 0.45 -67.73 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.78 Total: 42.26 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 3.35 Total: -14.28 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.09 Total: -77.59 kcal Atomic # 8 Polarization: -61.27 SS G_CDS: -2.06 Total: -63.32 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.18 0.45 -67.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595298998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.618 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds