Wall clock time and date at job start Tue Mar 31 2020 06:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47182 * 2 1 4 4 N 1.46905 * 109.46807 * 304.99996 * 3 2 1 5 5 C 1.46906 * 110.99539 * 299.99703 * 4 3 2 6 6 C 1.52998 * 109.46836 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47223 * 59.99693 * 6 5 4 8 8 O 1.42910 * 109.47077 * 299.99984 * 6 5 4 9 9 C 1.50696 * 109.47188 * 180.02562 * 6 5 4 10 10 H 1.07995 * 120.00332 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99983 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00210 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 120.00019 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 C 1.50697 * 109.47189 * 184.99862 * 3 2 1 18 18 O 1.20828 * 120.00015 * 335.00029 * 17 3 2 19 19 O 1.34233 * 119.99974 * 154.99682 * 17 3 2 20 20 C 1.50698 * 109.47121 * 64.99697 * 3 2 1 21 21 C 1.38231 * 120.00173 * 29.72629 * 20 3 2 22 22 C 1.38235 * 120.00237 * 179.80886 * 21 20 3 23 23 C 1.38236 * 119.99678 * 0.40381 * 22 21 20 24 24 C 1.38234 * 120.00030 * 359.84736 * 23 22 21 25 25 C 1.38234 * 120.00104 * 359.96797 * 24 23 22 26 26 H 1.08999 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47443 * 300.00700 * 1 2 3 28 28 H 1.09006 * 109.46900 * 60.00172 * 1 2 3 29 29 H 1.09001 * 109.47610 * 240.00067 * 2 1 3 30 30 H 1.08997 * 109.47231 * 119.99362 * 2 1 3 31 31 H 1.00897 * 111.00345 * 63.95284 * 4 3 2 32 32 H 1.08996 * 109.47057 * 60.00743 * 5 4 3 33 33 H 1.08997 * 109.47577 * 300.00100 * 5 4 3 34 34 H 0.96696 * 113.99416 * 300.00064 * 8 6 5 35 35 H 0.97000 * 119.99462 * 359.97438 * 12 11 9 36 36 H 0.96703 * 116.99691 * 179.97438 * 19 17 3 37 37 H 1.07998 * 119.99840 * 0.02562 * 21 20 3 38 38 H 1.07994 * 120.00071 * 180.22951 * 22 21 20 39 39 H 1.08004 * 119.99692 * 179.83777 * 23 22 21 40 40 H 1.08006 * 120.00113 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.99854 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4542 2.1690 -1.1346 5 6 1.8226 1.5391 -2.4096 6 6 1.1960 2.3222 -3.5650 7 1 1.5612 3.3491 -3.5481 8 8 -0.2263 2.3201 -3.4260 9 6 1.5733 1.6757 -4.8729 10 1 2.1979 0.7947 -4.8795 11 6 1.1220 2.2097 -6.0613 12 7 0.3618 3.2829 -6.0535 13 14 1.5903 1.4088 -7.6827 14 1 2.8552 2.0052 -8.1822 15 1 1.7779 -0.0501 -7.4782 16 1 0.5103 1.6346 -8.6765 17 6 3.5419 1.4443 -0.1238 18 8 4.1792 0.4843 0.2396 19 8 4.1716 2.5125 -0.6378 20 6 1.6413 2.1163 1.2876 21 6 1.5008 1.3708 2.4432 22 6 1.1389 1.9895 3.6252 23 6 0.9093 3.3524 3.6498 24 6 1.0447 4.0971 2.4931 25 6 1.4104 3.4790 1.3120 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.4519 2.2376 -1.0414 32 1 1.4577 0.5121 -2.4263 33 1 2.9073 1.5411 -2.5159 34 1 -0.6207 1.4372 -3.4326 35 1 0.1184 3.6985 -5.2115 36 1 5.1358 2.4673 -0.6968 37 1 1.6772 0.3055 2.4233 38 1 1.0327 1.4076 4.5288 39 1 0.6240 3.8353 4.5728 40 1 0.8650 5.1619 2.5123 41 1 1.5158 4.0608 0.4082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595299001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:52 Heat of formation + Delta-G solvation = -119.181290 kcal Electronic energy + Delta-G solvation = -24564.446200 eV Core-core repulsion = 21022.977578 eV Total energy + Delta-G solvation = -3541.468622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95927 -39.10350 -37.35306 -36.08436 -35.57515 -32.19714 -32.03853 -31.12956 -30.49112 -28.18607 -26.54301 -24.00405 -23.07733 -22.56770 -22.18384 -20.90196 -19.36399 -17.93342 -17.43908 -17.29670 -16.40996 -16.01573 -15.25121 -15.13769 -14.96172 -14.72156 -14.16783 -13.80709 -13.78548 -13.50159 -13.36260 -13.18291 -12.67766 -12.47982 -12.38994 -11.96832 -11.79331 -11.65888 -11.43168 -11.24802 -11.17621 -10.91633 -10.80158 -10.64830 -10.44143 -10.16439 -10.13945 -9.33965 -8.94135 -8.83852 -8.48344 -8.17239 -8.05562 -6.37054 -4.20798 1.18660 1.38031 2.30543 3.13845 3.40953 3.43475 3.59684 3.78629 4.16453 4.51216 4.51586 4.85534 4.91587 4.94115 5.10422 5.18505 5.22709 5.32650 5.45129 5.48400 5.56087 5.69015 5.84672 5.87762 5.90765 6.00221 6.04174 6.07005 6.13512 6.26833 6.39776 6.48916 6.56530 6.59264 6.67914 6.94158 7.15966 7.47322 7.66428 8.00644 8.06211 8.33487 8.84664 9.04881 9.64825 11.03461 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.004402 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.237014 B = 6358.998397 C = 6649.638017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C 0.168 3.832 4 N -0.660 5.660 5 C 0.036 3.964 6 C 0.219 3.781 7 H 0.060 0.940 8 O -0.581 6.581 9 C -0.651 4.651 10 H 0.048 0.952 11 C 0.037 3.963 12 N -0.891 5.891 13 Si 1.068 2.932 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.503 3.497 18 O -0.523 6.523 19 O -0.490 6.490 20 C -0.084 4.084 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.079 4.079 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.356 0.644 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.349 0.651 35 H 0.285 0.715 36 H 0.402 0.598 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 -2.585 17.740 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.075 3.925 4 N -0.295 5.295 5 C -0.092 4.092 6 C 0.162 3.838 7 H 0.077 0.923 8 O -0.385 6.385 9 C -0.689 4.689 10 H 0.066 0.934 11 C -0.173 4.173 12 N -0.525 5.525 13 Si 0.897 3.103 14 H -0.214 1.214 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.345 3.655 18 O -0.412 6.412 19 O -0.299 6.299 20 C -0.084 4.084 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.098 4.098 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.179 0.821 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.259 0.741 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.768 -1.557 16.218 16.388 hybrid contribution 0.453 -1.677 1.604 2.365 sum 2.221 -3.234 17.822 18.249 Atomic orbital electron populations 1.21834 0.94237 1.02393 1.02733 1.22129 0.97153 0.95062 1.03898 1.19493 0.87202 0.93869 0.91950 1.60737 1.17508 1.51235 1.00017 1.22859 1.00944 0.96439 0.88998 1.19550 0.77765 0.96319 0.90140 0.92268 1.86516 1.23687 1.32170 1.96155 1.22410 1.37654 1.16205 0.92627 0.93408 1.25748 0.93658 0.95463 1.02395 1.70605 1.31423 1.18267 1.32244 0.83580 0.76376 0.75144 0.75244 1.21397 1.21580 1.20955 1.23137 0.91015 0.79293 0.72040 1.90682 1.67969 1.35647 1.46889 1.84712 1.26869 1.42897 1.75402 1.19389 1.02044 0.94219 0.92762 1.21163 0.98933 1.00128 0.92204 1.21063 1.01011 0.94945 0.97662 1.21200 0.99689 0.94228 0.98281 1.21222 1.00441 1.00080 0.92753 1.21279 0.95765 0.93981 0.98730 0.91962 0.92031 0.91833 0.90606 0.90355 0.82129 0.95367 0.91481 0.80612 0.90274 0.74097 0.85690 0.86109 0.86245 0.85858 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.19 37.15 0.34 -1.56 16 2 C -0.14 -1.99 3.47 -26.73 -0.09 -2.08 16 3 C 0.17 2.51 0.53 -133.90 -0.07 2.44 16 4 N -0.66 -11.06 4.57 -102.32 -0.47 -11.52 16 5 C 0.04 0.72 4.46 -3.82 -0.02 0.70 16 6 C 0.22 5.32 2.70 -27.89 -0.08 5.24 16 7 H 0.06 1.60 8.01 -51.93 -0.42 1.19 16 8 O -0.58 -13.69 11.35 -35.23 -0.40 -14.09 16 9 C -0.65 -17.74 8.76 -34.44 -0.30 -18.05 16 10 H 0.05 1.30 7.74 -52.49 -0.41 0.90 16 11 C 0.04 1.03 5.40 -17.82 -0.10 0.93 16 12 N -0.89 -26.77 13.53 55.43 0.75 -26.02 16 13 Si 1.07 24.82 29.90 -169.99 -5.08 19.74 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.50 8.17 5.88 36.00 0.21 8.38 16 18 O -0.52 -9.28 16.95 -18.75 -0.32 -9.60 16 19 O -0.49 -7.30 12.48 -39.27 -0.49 -7.79 16 20 C -0.08 -1.13 4.04 -104.63 -0.42 -1.55 16 21 C -0.11 -1.27 8.17 -39.58 -0.32 -1.60 16 22 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.08 -1.05 9.31 -39.58 -0.37 -1.42 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.72 6.64 -51.93 -0.34 0.37 16 28 H 0.06 0.85 6.51 -51.93 -0.34 0.52 16 29 H 0.08 1.17 6.68 -51.93 -0.35 0.82 16 30 H 0.08 1.02 6.10 -51.93 -0.32 0.70 16 31 H 0.36 5.92 6.31 -39.29 -0.25 5.67 16 32 H 0.03 0.55 6.34 -51.93 -0.33 0.22 16 33 H 0.07 1.41 6.64 -51.93 -0.34 1.06 16 34 H 0.35 7.38 9.04 45.56 0.41 7.79 16 35 H 0.29 8.71 6.47 -40.82 -0.26 8.44 16 36 H 0.40 4.12 9.10 45.56 0.41 4.53 16 37 H 0.13 1.40 6.04 -52.49 -0.32 1.08 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.14 2.04 7.40 -52.49 -0.39 1.65 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -32.14 333.49 -7.11 -39.26 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -3.72 Total: 18.70 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.41 Total: -13.69 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.28 Total: -37.54 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.21 Total: -31.48 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.14 -7.11 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595299001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.926 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds