Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00362 * 2 1 4 4 C 1.52997 * 109.47406 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47264 * 65.00024 * 4 3 2 6 6 C 1.36946 * 120.00104 * 270.00285 * 5 4 3 7 7 H 1.07995 * 119.99637 * 142.09719 * 6 5 4 8 8 C 1.38811 * 119.99572 * 322.09480 * 6 5 4 9 9 N 1.31620 * 119.99311 * 160.47272 * 8 6 5 10 10 Si 1.86791 * 120.00459 * 340.47319 * 8 6 5 11 11 H 1.48501 * 109.47467 * 95.85766 * 10 8 6 12 12 H 1.48497 * 109.47116 * 215.85840 * 10 8 6 13 13 H 1.48506 * 109.47268 * 335.85807 * 10 8 6 14 14 C 1.46500 * 119.99939 * 89.99830 * 5 4 3 15 15 C 1.50699 * 109.47348 * 269.04908 * 14 5 4 16 16 C 1.38384 * 119.92548 * 96.57528 * 15 14 5 17 17 C 1.38349 * 120.30437 * 180.27705 * 16 15 14 18 18 C 1.37966 * 120.14750 * 359.48778 * 17 16 15 19 19 C 1.50695 * 120.07626 * 180.23157 * 18 17 16 20 20 C 1.39614 * 119.84580 * 0.51410 * 18 17 16 21 21 C 1.47729 * 120.14641 * 179.72190 * 20 18 17 22 22 O 1.21471 * 119.99908 * 353.60577 * 21 20 18 23 23 O 1.34707 * 119.99766 * 173.60168 * 21 20 18 24 24 C 1.37919 * 119.92370 * 276.60183 * 15 14 5 25 25 H 1.09004 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47338 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.46897 * 59.99860 * 1 2 3 28 28 H 1.09001 * 109.46658 * 59.99778 * 3 2 1 29 29 H 1.08995 * 109.47063 * 300.00214 * 3 2 1 30 30 H 1.09002 * 109.47110 * 304.99916 * 4 3 2 31 31 H 1.08993 * 109.47122 * 185.00466 * 4 3 2 32 32 H 0.97002 * 119.99641 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46766 * 149.04674 * 14 5 4 34 34 H 1.09000 * 109.46756 * 29.04839 * 14 5 4 35 35 H 1.08008 * 119.84786 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.92666 * 179.72710 * 17 16 15 37 37 H 1.08998 * 109.47125 * 265.40224 * 19 18 17 38 38 H 1.09001 * 109.47127 * 25.39998 * 19 18 17 39 39 H 1.08997 * 109.47187 * 145.39922 * 19 18 17 40 40 H 0.96697 * 117.00056 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.07789 * 359.95321 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7971 -1.3369 7 1 3.8164 -1.3089 -2.2456 8 6 4.5798 -1.5192 -0.2542 9 7 4.3473 -2.8119 -0.1691 10 14 5.5595 -0.6563 1.0816 11 1 4.6556 -0.2939 2.2027 12 1 6.6250 -1.5637 1.5784 13 1 6.1770 0.5746 0.5259 14 6 4.2863 1.4006 -2.4148 15 6 3.0470 1.5744 -3.2544 16 6 2.2638 2.7052 -3.1034 17 6 1.1213 2.8701 -3.8660 18 6 0.7612 1.9115 -4.7906 19 6 -0.4807 2.0952 -5.6242 20 6 1.5468 0.7682 -4.9481 21 6 1.1639 -0.2653 -5.9318 22 8 0.1058 -0.1796 -6.5221 23 8 1.9884 -1.3027 -6.1742 24 6 2.6957 0.6058 -4.1712 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.8514 0.5681 0.8409 31 1 3.9785 2.1764 0.0890 32 1 4.6852 -3.3166 0.5873 33 1 5.0640 0.9215 -3.0096 34 1 4.6362 2.3762 -2.0772 35 1 2.5435 3.4607 -2.3839 36 1 0.5122 3.7529 -3.7400 37 1 -1.3173 1.5847 -5.1471 38 1 -0.7058 3.1582 -5.7115 39 1 -0.3174 1.6758 -6.6169 40 1 1.6947 -1.9539 -6.8259 41 1 3.3080 -0.2762 -4.2883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599233160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -78.053006 kcal Electronic energy + Delta-G solvation = -24558.221102 eV Core-core repulsion = 21018.535936 eV Total energy + Delta-G solvation = -3539.685166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36881 -38.73186 -37.28246 -36.08182 -35.48730 -32.79410 -31.42525 -31.11409 -29.40308 -27.59689 -25.67297 -25.06605 -23.98121 -22.70674 -21.91862 -20.98513 -19.77696 -17.92314 -16.88703 -16.46332 -16.00619 -15.62362 -15.46950 -15.22311 -15.01858 -14.69714 -14.24457 -14.04576 -13.72075 -13.35801 -13.09253 -12.92756 -12.79469 -12.26664 -12.14323 -11.90453 -11.84085 -11.69888 -11.37841 -11.27708 -11.07805 -10.86949 -10.69936 -10.63641 -10.31307 -9.94802 -9.71921 -9.51742 -8.93857 -8.67904 -8.54058 -8.14895 -6.82381 -5.86076 -3.31268 0.96793 1.66512 2.75951 3.23092 3.36629 3.50055 3.53028 4.00350 4.58520 4.61815 4.93606 5.03109 5.07001 5.27263 5.29566 5.43699 5.51138 5.72690 5.74481 5.81631 5.83649 5.87534 5.88992 5.98592 6.01701 6.04621 6.12922 6.14576 6.24744 6.29542 6.34232 6.51065 6.59788 6.65025 6.72542 6.75674 6.98928 7.18915 7.97975 8.07338 8.15635 8.47422 9.01861 9.80676 10.14377 11.29557 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.005724 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.089415 B = 4890.276659 C = 5297.108401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.042 3.958 4 C 0.133 3.867 5 N -0.589 5.589 6 C -0.254 4.254 7 H 0.077 0.923 8 C 0.044 3.956 9 N -0.899 5.899 10 Si 0.879 3.121 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.180 3.820 15 C -0.099 4.099 16 C -0.076 4.076 17 C -0.143 4.143 18 C -0.033 4.033 19 C -0.120 4.120 20 C -0.140 4.140 21 C 0.530 3.470 22 O -0.522 6.522 23 O -0.506 6.506 24 C -0.028 4.028 25 H 0.077 0.923 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.410 0.590 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 11.110 -7.215 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.310 5.310 6 C -0.383 4.383 7 H 0.095 0.905 8 C -0.156 4.156 9 N -0.540 5.540 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.196 1.196 14 C 0.053 3.947 15 C -0.102 4.102 16 C -0.095 4.095 17 C -0.161 4.161 18 C -0.034 4.034 19 C -0.176 4.176 20 C -0.141 4.141 21 C 0.377 3.623 22 O -0.413 6.413 23 O -0.317 6.317 24 C -0.047 4.047 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.268 0.732 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.790 11.062 -6.975 14.302 hybrid contribution -0.202 0.124 0.610 0.655 sum -5.993 11.186 -6.365 14.197 Atomic orbital electron populations 1.22620 0.83865 1.01790 0.98195 1.88285 1.16825 1.26427 1.94782 1.23333 0.97355 0.85272 0.97744 1.21373 0.90432 0.96512 0.90987 1.44006 1.76104 1.03826 1.07061 1.18580 1.37729 0.79599 1.02364 0.90518 1.25313 0.97764 0.94800 0.97737 1.69850 1.45952 1.07246 1.30958 0.86905 0.80261 0.79396 0.82394 1.21639 1.23284 1.19623 1.19937 0.91117 0.94895 0.88729 1.21069 1.00217 0.93035 0.95889 1.21283 0.93832 0.97139 0.97239 1.20858 0.98150 0.99454 0.97640 1.19838 0.95480 0.92366 0.95678 1.21073 0.94497 1.01098 1.00968 1.18870 0.99580 0.94942 1.00679 1.21026 0.80859 0.80339 0.80117 1.90787 1.24321 1.75881 1.50355 1.84648 1.50664 1.35379 1.61031 1.21413 0.93659 0.97981 0.91652 0.90422 0.95645 0.95315 0.95750 0.93945 0.92098 0.92730 0.92983 0.91149 0.93261 0.86105 0.85914 0.91051 0.92525 0.89191 0.73243 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -7.81 10.18 -35.23 -0.36 -8.17 16 3 C 0.04 0.82 6.28 37.16 0.23 1.05 16 4 C 0.13 2.77 4.94 -4.04 -0.02 2.75 16 5 N -0.59 -13.16 2.05 -174.61 -0.36 -13.52 16 6 C -0.25 -6.85 9.45 -15.06 -0.14 -6.99 16 7 H 0.08 2.26 7.85 -52.49 -0.41 1.85 16 8 C 0.04 1.26 5.35 -17.43 -0.09 1.16 16 9 N -0.90 -27.49 13.97 55.49 0.78 -26.71 16 10 Si 0.88 22.05 24.84 -169.99 -4.22 17.83 16 11 H -0.29 -7.17 6.73 56.52 0.38 -6.79 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 13 H -0.27 -6.47 7.10 56.52 0.40 -6.07 16 14 C 0.18 3.25 5.83 -5.19 -0.03 3.22 16 15 C -0.10 -1.67 5.18 -104.69 -0.54 -2.21 16 16 C -0.08 -1.09 7.84 -39.49 -0.31 -1.40 16 17 C -0.14 -1.93 9.67 -39.64 -0.38 -2.31 16 18 C -0.03 -0.49 5.91 -104.21 -0.62 -1.10 16 19 C -0.12 -1.56 8.80 36.00 0.32 -1.24 16 20 C -0.14 -2.30 5.87 -104.98 -0.62 -2.91 16 21 C 0.53 8.40 8.20 34.61 0.28 8.69 16 22 O -0.52 -8.69 14.10 -19.24 -0.27 -8.96 16 23 O -0.51 -6.97 12.70 -40.51 -0.51 -7.48 16 24 C -0.03 -0.50 9.29 -39.17 -0.36 -0.86 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.76 5.85 -51.93 -0.30 0.46 16 30 H 0.06 1.44 3.10 -51.93 -0.16 1.28 16 31 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 34 H 0.05 0.77 7.78 -51.93 -0.40 0.36 16 35 H 0.12 1.48 8.05 -52.48 -0.42 1.06 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 39 H 0.09 1.26 5.73 -51.93 -0.30 0.96 16 40 H 0.41 3.52 9.11 45.56 0.42 3.93 16 41 H 0.14 2.59 7.42 -52.49 -0.39 2.20 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -33.41 338.36 -5.93 -39.35 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.91 Total: 3.03 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.17 Total: -0.47 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.42 Total: -40.23 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.14 Total: -24.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.22 Total: 17.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.41 -5.93 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.704 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds