Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00362 * 2 1 4 4 C 1.52997 * 109.47406 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47264 * 65.00024 * 4 3 2 6 6 C 1.36946 * 120.00104 * 270.00285 * 5 4 3 7 7 H 1.07995 * 119.99637 * 142.09719 * 6 5 4 8 8 C 1.38811 * 119.99572 * 322.09480 * 6 5 4 9 9 N 1.31620 * 119.99311 * 160.47272 * 8 6 5 10 10 Si 1.86791 * 120.00459 * 340.47319 * 8 6 5 11 11 H 1.48501 * 109.47467 * 95.85766 * 10 8 6 12 12 H 1.48497 * 109.47116 * 215.85840 * 10 8 6 13 13 H 1.48506 * 109.47268 * 335.85807 * 10 8 6 14 14 C 1.46500 * 119.99939 * 89.99830 * 5 4 3 15 15 C 1.50699 * 109.47348 * 269.04908 * 14 5 4 16 16 C 1.38384 * 119.92548 * 96.57528 * 15 14 5 17 17 C 1.38349 * 120.30437 * 180.27705 * 16 15 14 18 18 C 1.37966 * 120.14750 * 359.48778 * 17 16 15 19 19 C 1.50695 * 120.07626 * 180.23157 * 18 17 16 20 20 C 1.39614 * 119.84580 * 0.51410 * 18 17 16 21 21 C 1.47729 * 120.14641 * 179.72190 * 20 18 17 22 22 O 1.21471 * 119.99908 * 353.60577 * 21 20 18 23 23 O 1.34707 * 119.99766 * 173.60168 * 21 20 18 24 24 C 1.37919 * 119.92370 * 276.60183 * 15 14 5 25 25 H 1.09004 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47338 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.46897 * 59.99860 * 1 2 3 28 28 H 1.09001 * 109.46658 * 59.99778 * 3 2 1 29 29 H 1.08995 * 109.47063 * 300.00214 * 3 2 1 30 30 H 1.09002 * 109.47110 * 304.99916 * 4 3 2 31 31 H 1.08993 * 109.47122 * 185.00466 * 4 3 2 32 32 H 0.97002 * 119.99641 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46766 * 149.04674 * 14 5 4 34 34 H 1.09000 * 109.46756 * 29.04839 * 14 5 4 35 35 H 1.08008 * 119.84786 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.92666 * 179.72710 * 17 16 15 37 37 H 1.08998 * 109.47125 * 265.40224 * 19 18 17 38 38 H 1.09001 * 109.47127 * 25.39998 * 19 18 17 39 39 H 1.08997 * 109.47187 * 145.39922 * 19 18 17 40 40 H 0.96697 * 117.00056 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.07789 * 359.95321 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7971 -1.3369 7 1 3.8164 -1.3089 -2.2456 8 6 4.5798 -1.5192 -0.2542 9 7 4.3473 -2.8119 -0.1691 10 14 5.5595 -0.6563 1.0816 11 1 4.6556 -0.2939 2.2027 12 1 6.6250 -1.5637 1.5784 13 1 6.1770 0.5746 0.5259 14 6 4.2863 1.4006 -2.4148 15 6 3.0470 1.5744 -3.2544 16 6 2.2638 2.7052 -3.1034 17 6 1.1213 2.8701 -3.8660 18 6 0.7612 1.9115 -4.7906 19 6 -0.4807 2.0952 -5.6242 20 6 1.5468 0.7682 -4.9481 21 6 1.1639 -0.2653 -5.9318 22 8 0.1058 -0.1796 -6.5221 23 8 1.9884 -1.3027 -6.1742 24 6 2.6957 0.6058 -4.1712 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.8514 0.5681 0.8409 31 1 3.9785 2.1764 0.0890 32 1 4.6852 -3.3166 0.5873 33 1 5.0640 0.9215 -3.0096 34 1 4.6362 2.3762 -2.0772 35 1 2.5435 3.4607 -2.3839 36 1 0.5122 3.7529 -3.7400 37 1 -1.3173 1.5847 -5.1471 38 1 -0.7058 3.1582 -5.7115 39 1 -0.3174 1.6758 -6.6169 40 1 1.6947 -1.9539 -6.8259 41 1 3.3080 -0.2762 -4.2883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599233160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = -101.017916 kcal Electronic energy + Delta-G solvation = -24559.216935 eV Core-core repulsion = 21018.535936 eV Total energy + Delta-G solvation = -3540.680999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57588 -39.98963 -38.79838 -37.38741 -37.00575 -34.26858 -33.25991 -32.31645 -30.83830 -29.04536 -27.17941 -26.54185 -25.24688 -24.28232 -23.14170 -22.57754 -21.07983 -19.16959 -18.66099 -17.85049 -17.62671 -17.04043 -16.78729 -16.58855 -16.26003 -16.22243 -15.80707 -15.48516 -15.18119 -14.58138 -14.47136 -14.41059 -14.21097 -13.86129 -13.58051 -13.26228 -13.17220 -13.02244 -12.65634 -12.59249 -12.52553 -12.41051 -12.27225 -12.04485 -11.92661 -11.63773 -11.36428 -11.13052 -10.55622 -10.37918 -9.89005 -9.46959 -8.65808 -8.02104 -5.42583 -0.23560 0.46728 1.37666 1.46958 1.54005 1.57341 2.13701 2.54523 2.76638 3.16458 3.23299 3.63101 3.82474 3.90489 4.13359 4.16535 4.31516 4.36625 4.43180 4.54194 4.57901 4.61509 4.62466 4.66796 4.73335 4.79154 4.82017 4.84459 4.90677 5.09450 5.09989 5.13265 5.21086 5.40777 5.56051 5.62807 5.74182 6.01744 6.08585 6.32343 6.60217 6.96857 7.11381 7.76974 8.14429 9.18135 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.005724 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.089415 B = 4890.276659 C = 5297.108401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.032 0.968 8 C -0.021 4.021 9 N -0.957 5.957 10 Si 0.947 3.053 11 H -0.285 1.285 12 H -0.320 1.320 13 H -0.245 1.245 14 C 0.178 3.822 15 C -0.113 4.113 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.037 4.037 19 C -0.116 4.116 20 C -0.159 4.159 21 C 0.527 3.473 22 O -0.534 6.534 23 O -0.512 6.512 24 C -0.050 4.050 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.429 0.571 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 15.361 -6.616 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.322 5.322 6 C -0.355 4.355 7 H 0.050 0.950 8 C -0.216 4.216 9 N -0.602 5.602 10 Si 0.777 3.223 11 H -0.213 1.213 12 H -0.249 1.249 13 H -0.169 1.169 14 C 0.053 3.947 15 C -0.115 4.115 16 C -0.085 4.085 17 C -0.150 4.150 18 C -0.037 4.037 19 C -0.172 4.172 20 C -0.160 4.160 21 C 0.374 3.626 22 O -0.427 6.427 23 O -0.326 6.326 24 C -0.069 4.069 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.291 0.709 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.718 15.366 -6.410 17.954 hybrid contribution -0.018 -1.168 0.273 1.200 sum -6.736 14.198 -6.138 16.871 Atomic orbital electron populations 1.22719 0.81775 1.02062 0.99916 1.88214 1.19410 1.28854 1.95203 1.23370 0.96019 0.84410 0.99806 1.21560 0.92051 0.97797 0.88797 1.44066 1.76730 1.02375 1.08980 1.18363 1.34867 0.82057 1.00165 0.95012 1.25957 0.99582 0.95297 1.00734 1.70016 1.48662 1.09296 1.32263 0.85810 0.78187 0.78669 0.79644 1.21307 1.24933 1.16898 1.20071 0.91633 0.95656 0.87337 1.20908 1.00386 0.94211 0.96031 1.21591 0.93188 0.96414 0.97348 1.21286 0.97828 0.99913 0.95957 1.20210 0.95626 0.91849 0.96043 1.21049 0.93395 1.03030 0.99698 1.19073 0.99822 0.96106 1.01035 1.21097 0.80800 0.80638 0.80032 1.90775 1.24684 1.76325 1.50891 1.84624 1.50588 1.35612 1.61767 1.21261 0.94413 0.97808 0.93426 0.91116 0.92865 0.94371 0.92788 0.92404 0.94971 0.88318 0.93620 0.92608 0.89323 0.82789 0.81986 0.91352 0.89352 0.90597 0.70948 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 11.01 113.37 1.25 2.32 16 2 O -0.40 -17.55 10.18 -148.98 -1.52 -19.06 16 3 C 0.04 1.49 6.28 71.98 0.45 1.94 16 4 C 0.12 4.73 4.94 86.38 0.43 5.16 16 5 N -0.60 -26.04 2.05 -706.36 -1.45 -27.49 16 6 C -0.22 -12.45 9.45 84.03 0.79 -11.66 16 7 H 0.03 2.02 7.85 -2.91 -0.02 2.00 16 8 C -0.02 -1.22 5.35 84.86 0.45 -0.77 16 9 N -0.96 -61.52 13.97 21.65 0.30 -61.22 16 10 Si 0.95 46.26 24.84 68.60 1.70 47.96 16 11 H -0.29 -13.61 6.73 99.48 0.67 -12.94 16 12 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 13 H -0.25 -10.77 7.10 99.48 0.71 -10.06 16 14 C 0.18 6.11 5.83 85.63 0.50 6.61 16 15 C -0.11 -3.60 5.18 -19.91 -0.10 -3.70 16 16 C -0.07 -1.63 7.84 22.33 0.17 -1.45 16 17 C -0.13 -2.96 9.67 22.23 0.21 -2.74 16 18 C -0.04 -1.00 5.91 -19.60 -0.12 -1.11 16 19 C -0.12 -2.70 8.80 71.23 0.63 -2.07 16 20 C -0.16 -5.23 5.87 -20.10 -0.12 -5.35 16 21 C 0.53 17.09 8.20 70.33 0.58 17.67 16 22 O -0.53 -17.84 14.10 19.93 0.28 -17.56 16 23 O -0.51 -14.82 12.70 -56.17 -0.71 -15.54 16 24 C -0.05 -1.79 9.29 22.53 0.21 -1.58 16 25 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.82 5.85 -2.39 -0.01 1.81 16 30 H 0.03 1.45 3.10 -2.39 -0.01 1.44 16 31 H 0.10 2.91 7.89 -2.39 -0.02 2.89 16 32 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 34 H 0.09 2.36 7.78 -2.39 -0.02 2.34 16 35 H 0.15 2.74 8.05 -2.91 -0.02 2.72 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 39 H 0.08 2.02 5.73 -2.39 -0.01 2.01 16 40 H 0.43 7.75 9.11 -74.06 -0.67 7.07 16 41 H 0.11 4.43 7.42 -2.91 -0.02 4.41 16 Total: -1.00 -76.74 338.36 4.29 -72.45 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.34 Total: 17.19 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.34 Total: 3.27 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -1.15 Total: -88.71 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.95 Total: -52.16 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.70 Total: 47.96 kcal Total: -76.74 4.29 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.566 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds