Wall clock time and date at job start Tue Mar 31 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35904 * 116.99963 * 2 1 4 4 C 1.38753 * 120.05432 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94356 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.97188 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47158 * 275.49116 * 6 5 4 8 8 C 1.36928 * 119.99916 * 89.83932 * 7 6 5 9 9 H 1.08005 * 120.00322 * 320.35057 * 8 7 6 10 10 C 1.38817 * 120.00420 * 140.35444 * 8 7 6 11 11 N 1.31615 * 120.00579 * 162.91295 * 10 8 7 12 12 Si 1.86802 * 119.99575 * 342.92062 * 10 8 7 13 13 H 1.48494 * 109.47475 * 95.52856 * 12 10 8 14 14 H 1.48499 * 109.46688 * 215.53162 * 12 10 8 15 15 H 1.48497 * 109.47242 * 335.52717 * 12 10 8 16 16 C 1.46498 * 120.00060 * 269.83369 * 7 6 5 17 17 C 1.53001 * 109.47068 * 90.00013 * 16 7 6 18 18 C 1.50694 * 109.47152 * 179.97438 * 17 16 7 19 19 O 1.20827 * 120.00345 * 0.02562 * 18 17 16 20 20 O 1.34228 * 120.00047 * 180.02562 * 18 17 16 21 21 C 1.38284 * 120.05730 * 0.03362 * 5 4 3 22 22 C 1.38248 * 120.11151 * 0.24109 * 21 5 4 23 23 C 1.38169 * 120.05266 * 359.45704 * 22 21 5 24 24 C 1.50698 * 120.02662 * 180.25084 * 23 22 21 25 25 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47449 * 299.99723 * 1 2 3 27 27 H 1.08995 * 109.47552 * 60.00008 * 1 2 3 28 28 H 1.08001 * 120.03064 * 0.04914 * 4 3 2 29 29 H 1.08993 * 109.47155 * 35.49167 * 6 5 4 30 30 H 1.09005 * 109.46981 * 155.49029 * 6 5 4 31 31 H 0.96993 * 120.00816 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47406 * 210.00592 * 16 7 6 33 33 H 1.09002 * 109.47071 * 330.00458 * 16 7 6 34 34 H 1.09001 * 109.47479 * 300.00534 * 17 16 7 35 35 H 1.09002 * 109.46811 * 60.00285 * 17 16 7 36 36 H 0.96703 * 117.00074 * 180.02562 * 20 18 17 37 37 H 1.08003 * 119.94691 * 179.97438 * 21 5 4 38 38 H 1.07993 * 119.97321 * 179.70525 * 22 21 5 39 39 H 1.09009 * 109.46984 * 270.32057 * 24 23 22 40 40 H 1.09000 * 109.47368 * 30.31906 * 24 23 22 41 41 H 1.08998 * 109.47072 * 150.31996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 1.1017 4.8699 -0.0011 7 7 0.7249 5.2076 -1.3759 8 6 -0.4404 4.7214 -1.9055 9 1 -0.7489 3.7083 -1.6930 10 6 -1.2255 5.5303 -2.7156 11 7 -2.1453 4.9930 -3.4886 12 14 -0.9762 7.3816 -2.7088 13 1 -0.0746 7.7638 -3.8251 14 1 -2.2874 8.0581 -2.8776 15 1 -0.3687 7.7946 -1.4183 16 6 1.5948 6.0658 -2.1841 17 6 2.6013 5.2000 -2.9444 18 6 3.4957 6.0826 -3.7762 19 8 3.3440 7.2813 -3.7620 20 8 4.4609 5.5373 -4.5329 21 6 3.3017 3.6759 -0.0018 22 6 4.0559 2.5172 -0.0070 23 6 3.4310 1.2849 -0.0002 24 6 4.2537 0.0222 -0.0001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2127 2.3204 -0.0002 29 1 0.2022 4.7203 0.5959 30 1 1.6894 5.6831 0.4249 31 1 -2.6936 5.5581 -4.0549 32 1 0.9904 6.6295 -2.8948 33 1 2.1293 6.7574 -1.5329 34 1 3.2057 4.6363 -2.2337 35 1 2.0668 4.5083 -3.5956 36 1 5.0097 6.1438 -5.0489 37 1 3.7921 4.6382 -0.0026 38 1 5.1342 2.5753 -0.0123 39 1 4.4520 -0.2823 -1.0279 40 1 5.1978 0.2037 0.5136 41 1 3.7064 -0.7680 0.5138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599405292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:41 Heat of formation + Delta-G solvation = -87.331182 kcal Electronic energy + Delta-G solvation = -24203.538401 eV Core-core repulsion = 20663.450903 eV Total energy + Delta-G solvation = -3540.087498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00225 -39.80473 -37.53451 -36.22542 -35.64587 -32.95105 -31.86561 -30.51460 -29.72023 -27.77197 -27.26269 -24.80903 -24.43268 -21.85488 -21.64872 -20.65555 -20.23562 -17.80854 -17.29344 -16.62388 -16.09475 -15.91970 -15.84520 -15.49318 -15.15580 -15.05607 -14.13773 -13.89370 -13.70334 -13.31153 -13.17943 -12.99556 -12.68066 -12.51438 -12.13371 -12.04405 -11.82075 -11.74558 -11.60534 -11.25204 -11.14825 -10.98789 -10.72829 -10.59643 -10.49255 -10.42611 -10.17095 -9.87030 -9.55771 -8.67295 -8.28919 -7.72009 -6.96905 -6.07431 -3.58669 1.72147 1.82042 2.59161 3.33809 3.43973 3.46489 3.50807 3.55804 4.09247 4.46012 5.04093 5.10685 5.14076 5.27051 5.30580 5.42525 5.49566 5.50871 5.57938 5.58326 5.67472 5.76210 5.82092 5.89516 5.95841 5.97145 6.06138 6.18062 6.21519 6.45714 6.50592 6.55131 6.64604 6.73951 6.79591 6.84197 7.10188 7.18734 7.71440 7.95000 8.23024 8.28051 8.84258 9.59166 9.97083 11.06434 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.006328 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.522345 B = 4423.554449 C = 5809.594743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.178 4.178 5 C -0.047 4.047 6 C 0.177 3.823 7 N -0.592 5.592 8 C -0.276 4.276 9 H 0.080 0.920 10 C 0.041 3.959 11 N -0.899 5.899 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.302 1.302 15 H -0.267 1.267 16 C 0.149 3.851 17 C -0.136 4.136 18 C 0.478 3.522 19 O -0.524 6.524 20 O -0.522 6.522 21 C -0.154 4.154 22 C -0.089 4.089 23 C -0.134 4.134 24 C -0.098 4.098 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.399 0.601 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -6.138 6.066 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.197 4.197 5 C -0.050 4.050 6 C 0.051 3.949 7 N -0.312 5.312 8 C -0.404 4.404 9 H 0.098 0.902 10 C -0.160 4.160 11 N -0.539 5.539 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.230 1.230 15 H -0.192 1.192 16 C 0.023 3.977 17 C -0.176 4.176 18 C 0.321 3.679 19 O -0.413 6.413 20 O -0.334 6.334 21 C -0.173 4.173 22 C -0.107 4.107 23 C -0.134 4.134 24 C -0.155 4.155 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.257 0.743 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.846 -6.231 6.199 13.960 hybrid contribution 0.200 1.519 -0.741 1.702 sum 11.046 -4.712 5.458 13.192 Atomic orbital electron populations 1.23032 0.78428 1.03308 1.02025 1.85975 1.21300 1.27227 1.88999 1.18851 0.91678 0.84191 0.97614 1.21171 1.00272 0.91508 1.06796 1.20770 0.93957 0.96583 0.93722 1.19999 0.96708 0.91025 0.87168 1.44063 1.20809 1.58349 1.08006 1.18711 0.96383 0.96822 1.28531 0.90228 1.25482 0.95373 0.97837 0.97314 1.69802 1.23661 1.35400 1.25035 0.86852 0.75886 0.87134 0.78922 1.20929 1.22975 1.19161 1.21092 0.90928 0.91611 0.94042 1.22378 0.96501 0.99913 0.98816 1.24200 0.78249 0.88387 0.77020 1.90677 1.69480 1.17360 1.63785 1.84632 1.45438 1.45913 1.57383 1.20890 0.93581 0.97808 1.05056 1.20732 0.99094 0.91271 0.99606 1.19084 0.90563 0.95834 1.07967 1.20522 0.98350 0.94894 1.01759 0.88784 0.92826 0.91988 0.85263 0.91230 0.93082 0.92513 0.92049 0.93114 0.87964 0.87279 0.74320 0.86638 0.86235 0.91948 0.92302 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.32 -4.91 9.54 -19.44 -0.19 -5.10 16 3 C 0.12 1.98 6.66 -39.22 -0.26 1.72 16 4 C -0.18 -3.08 8.71 -39.43 -0.34 -3.42 16 5 C -0.05 -0.81 5.30 -104.65 -0.55 -1.37 16 6 C 0.18 3.28 5.84 -5.19 -0.03 3.25 16 7 N -0.59 -13.11 2.05 -174.61 -0.36 -13.47 16 8 C -0.28 -7.20 9.95 -15.06 -0.15 -7.35 16 9 H 0.08 2.22 8.02 -52.48 -0.42 1.80 16 10 C 0.04 1.15 5.38 -17.43 -0.09 1.06 16 11 N -0.90 -26.46 13.97 55.49 0.78 -25.69 16 12 Si 0.88 22.27 24.78 -169.99 -4.21 18.06 16 13 H -0.28 -7.25 6.76 56.52 0.38 -6.86 16 14 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 15 H -0.27 -6.56 7.07 56.52 0.40 -6.16 16 16 C 0.15 3.20 3.76 -4.04 -0.02 3.18 16 17 C -0.14 -2.55 6.13 -27.89 -0.17 -2.72 16 18 C 0.48 8.49 8.33 36.00 0.30 8.79 16 19 O -0.52 -10.73 16.74 -18.75 -0.31 -11.04 16 20 O -0.52 -7.38 13.42 -39.25 -0.53 -7.90 16 21 C -0.15 -2.34 7.76 -39.56 -0.31 -2.65 16 22 C -0.09 -1.25 9.70 -39.60 -0.38 -1.63 16 23 C -0.13 -1.98 5.89 -104.47 -0.62 -2.60 16 24 C -0.10 -1.19 9.79 36.00 0.35 -0.84 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 27 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 28 H 0.13 2.28 6.27 -52.49 -0.33 1.95 16 29 H 0.07 1.29 8.02 -51.93 -0.42 0.88 16 30 H 0.05 0.85 7.80 -51.93 -0.40 0.45 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.06 1.49 3.10 -51.93 -0.16 1.33 16 33 H 0.05 1.01 7.85 -51.93 -0.41 0.61 16 34 H 0.10 1.76 5.87 -51.93 -0.31 1.45 16 35 H 0.11 2.21 8.14 -51.93 -0.42 1.79 16 36 H 0.40 3.70 9.10 45.56 0.41 4.12 16 37 H 0.12 1.59 8.04 -52.48 -0.42 1.16 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -32.03 340.26 -5.88 -37.91 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.91 Total: 5.35 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.28 Total: -3.25 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.42 Total: -39.16 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.03 Total: -24.04 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.21 Total: 18.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.03 -5.88 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599405292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.417 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds