Wall clock time and date at job start Tue Mar 31 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35904 * 116.99963 * 2 1 4 4 C 1.38753 * 120.05432 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94356 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.97188 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47158 * 275.49116 * 6 5 4 8 8 C 1.36928 * 119.99916 * 89.83932 * 7 6 5 9 9 H 1.08005 * 120.00322 * 320.35057 * 8 7 6 10 10 C 1.38817 * 120.00420 * 140.35444 * 8 7 6 11 11 N 1.31615 * 120.00579 * 162.91295 * 10 8 7 12 12 Si 1.86802 * 119.99575 * 342.92062 * 10 8 7 13 13 H 1.48494 * 109.47475 * 95.52856 * 12 10 8 14 14 H 1.48499 * 109.46688 * 215.53162 * 12 10 8 15 15 H 1.48497 * 109.47242 * 335.52717 * 12 10 8 16 16 C 1.46498 * 120.00060 * 269.83369 * 7 6 5 17 17 C 1.53001 * 109.47068 * 90.00013 * 16 7 6 18 18 C 1.50694 * 109.47152 * 179.97438 * 17 16 7 19 19 O 1.20827 * 120.00345 * 0.02562 * 18 17 16 20 20 O 1.34228 * 120.00047 * 180.02562 * 18 17 16 21 21 C 1.38284 * 120.05730 * 0.03362 * 5 4 3 22 22 C 1.38248 * 120.11151 * 0.24109 * 21 5 4 23 23 C 1.38169 * 120.05266 * 359.45704 * 22 21 5 24 24 C 1.50698 * 120.02662 * 180.25084 * 23 22 21 25 25 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47449 * 299.99723 * 1 2 3 27 27 H 1.08995 * 109.47552 * 60.00008 * 1 2 3 28 28 H 1.08001 * 120.03064 * 0.04914 * 4 3 2 29 29 H 1.08993 * 109.47155 * 35.49167 * 6 5 4 30 30 H 1.09005 * 109.46981 * 155.49029 * 6 5 4 31 31 H 0.96993 * 120.00816 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47406 * 210.00592 * 16 7 6 33 33 H 1.09002 * 109.47071 * 330.00458 * 16 7 6 34 34 H 1.09001 * 109.47479 * 300.00534 * 17 16 7 35 35 H 1.09002 * 109.46811 * 60.00285 * 17 16 7 36 36 H 0.96703 * 117.00074 * 180.02562 * 20 18 17 37 37 H 1.08003 * 119.94691 * 179.97438 * 21 5 4 38 38 H 1.07993 * 119.97321 * 179.70525 * 22 21 5 39 39 H 1.09009 * 109.46984 * 270.32057 * 24 23 22 40 40 H 1.09000 * 109.47368 * 30.31906 * 24 23 22 41 41 H 1.08998 * 109.47072 * 150.31996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 1.1017 4.8699 -0.0011 7 7 0.7249 5.2076 -1.3759 8 6 -0.4404 4.7214 -1.9055 9 1 -0.7489 3.7083 -1.6930 10 6 -1.2255 5.5303 -2.7156 11 7 -2.1453 4.9930 -3.4886 12 14 -0.9762 7.3816 -2.7088 13 1 -0.0746 7.7638 -3.8251 14 1 -2.2874 8.0581 -2.8776 15 1 -0.3687 7.7946 -1.4183 16 6 1.5948 6.0658 -2.1841 17 6 2.6013 5.2000 -2.9444 18 6 3.4957 6.0826 -3.7762 19 8 3.3440 7.2813 -3.7620 20 8 4.4609 5.5373 -4.5329 21 6 3.3017 3.6759 -0.0018 22 6 4.0559 2.5172 -0.0070 23 6 3.4310 1.2849 -0.0002 24 6 4.2537 0.0222 -0.0001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2127 2.3204 -0.0002 29 1 0.2022 4.7203 0.5959 30 1 1.6894 5.6831 0.4249 31 1 -2.6936 5.5581 -4.0549 32 1 0.9904 6.6295 -2.8948 33 1 2.1293 6.7574 -1.5329 34 1 3.2057 4.6363 -2.2337 35 1 2.0668 4.5083 -3.5956 36 1 5.0097 6.1438 -5.0489 37 1 3.7921 4.6382 -0.0026 38 1 5.1342 2.5753 -0.0123 39 1 4.4520 -0.2823 -1.0279 40 1 5.1978 0.2037 0.5136 41 1 3.7064 -0.7680 0.5138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599405292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:40 Heat of formation + Delta-G solvation = -107.860463 kcal Electronic energy + Delta-G solvation = -24204.428617 eV Core-core repulsion = 20663.450903 eV Total energy + Delta-G solvation = -3540.977714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31606 -41.06886 -38.86628 -37.66652 -37.02944 -34.36686 -33.72577 -32.04010 -30.92802 -29.16520 -28.37297 -26.58609 -25.77354 -23.23489 -23.00939 -22.05154 -21.65212 -19.24122 -18.74811 -18.18229 -17.76138 -17.34515 -17.10835 -16.76117 -16.63900 -16.29980 -15.76559 -15.24433 -15.06523 -14.63569 -14.56661 -14.33632 -14.31395 -13.88810 -13.72939 -13.44778 -13.13036 -12.94891 -12.79877 -12.76045 -12.55539 -12.50541 -12.21395 -11.97808 -11.95534 -11.81339 -11.73267 -11.63565 -11.39515 -10.70855 -9.54159 -8.98252 -8.75940 -8.21253 -5.67355 0.50126 0.61650 1.19339 1.32467 1.39621 1.48814 2.12786 2.38539 2.45489 2.84366 3.09930 3.51923 3.91509 3.99299 4.03593 4.07511 4.25473 4.33156 4.36953 4.39692 4.45934 4.51506 4.66393 4.71646 4.76834 4.80974 4.86940 4.89058 4.91969 5.00659 5.09144 5.09418 5.41249 5.53648 5.59075 5.65435 5.82287 5.94696 6.02061 6.18538 6.52528 6.90924 7.01866 7.56445 7.98753 8.96607 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.006328 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.522345 B = 4423.554449 C = 5809.594743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.328 6.328 3 C 0.105 3.895 4 C -0.197 4.197 5 C -0.063 4.063 6 C 0.177 3.823 7 N -0.601 5.601 8 C -0.248 4.248 9 H 0.051 0.949 10 C -0.010 4.010 11 N -0.945 5.945 12 Si 0.937 3.063 13 H -0.290 1.290 14 H -0.310 1.310 15 H -0.254 1.254 16 C 0.147 3.853 17 C -0.127 4.127 18 C 0.490 3.510 19 O -0.553 6.553 20 O -0.510 6.510 21 C -0.152 4.152 22 C -0.083 4.083 23 C -0.138 4.138 24 C -0.096 4.096 25 H 0.125 0.875 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.425 0.575 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.544 -6.196 6.931 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.242 6.242 3 C 0.060 3.940 4 C -0.216 4.216 5 C -0.066 4.066 6 C 0.052 3.948 7 N -0.322 5.322 8 C -0.378 4.378 9 H 0.069 0.931 10 C -0.207 4.207 11 N -0.589 5.589 12 Si 0.767 3.233 13 H -0.219 1.219 14 H -0.239 1.239 15 H -0.178 1.178 16 C 0.021 3.979 17 C -0.167 4.167 18 C 0.334 3.666 19 O -0.444 6.444 20 O -0.323 6.323 21 C -0.171 4.171 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.153 4.153 25 H 0.143 0.857 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.286 0.714 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.183 -6.294 7.083 17.057 hybrid contribution -0.699 1.399 -0.982 1.846 sum 13.484 -4.896 6.101 15.589 Atomic orbital electron populations 1.23161 0.77444 1.05043 1.01195 1.85960 1.22326 1.26942 1.88978 1.19099 0.92623 0.84057 0.98186 1.21149 0.99678 0.92568 1.08228 1.20587 0.94918 0.95412 0.95645 1.20088 0.97065 0.92697 0.84950 1.44115 1.20084 1.58325 1.09710 1.18594 0.97105 0.95408 1.26689 0.93117 1.25982 0.95830 1.00917 0.97974 1.69910 1.25647 1.36392 1.26982 0.85960 0.74965 0.83348 0.78998 1.21850 1.23858 1.17774 1.21033 0.90995 0.91889 0.93957 1.22089 0.96452 0.99201 0.99001 1.23732 0.78481 0.87432 0.76932 1.90681 1.70479 1.18407 1.64868 1.84544 1.44684 1.46206 1.56846 1.21106 0.92570 0.99314 1.04129 1.21122 1.00779 0.90302 0.97858 1.19556 0.90169 0.97566 1.06610 1.20566 0.98941 0.93380 1.02381 0.85726 0.92419 0.94100 0.87089 0.92256 0.90481 0.92853 0.94973 0.91156 0.85956 0.89236 0.71371 0.84618 0.82739 0.91450 0.89735 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.81 113.37 1.11 1.79 16 2 O -0.33 -9.92 9.54 -92.46 -0.88 -10.80 16 3 C 0.11 3.36 6.66 22.51 0.15 3.51 16 4 C -0.20 -6.87 8.71 22.37 0.19 -6.67 16 5 C -0.06 -2.09 5.30 -19.88 -0.11 -2.19 16 6 C 0.18 6.37 5.84 85.63 0.50 6.87 16 7 N -0.60 -26.39 2.05 -706.33 -1.45 -27.84 16 8 C -0.25 -13.27 9.95 84.04 0.84 -12.44 16 9 H 0.05 2.98 8.02 -2.91 -0.02 2.96 16 10 C -0.01 -0.57 5.38 84.86 0.46 -0.12 16 11 N -0.95 -57.81 13.97 21.65 0.30 -57.51 16 12 Si 0.94 47.03 24.78 68.60 1.70 48.73 16 13 H -0.29 -14.84 6.76 99.48 0.67 -14.17 16 14 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 15 H -0.25 -11.99 7.07 99.48 0.70 -11.29 16 16 C 0.15 6.09 3.76 86.38 0.32 6.41 16 17 C -0.13 -4.56 6.13 29.85 0.18 -4.38 16 18 C 0.49 16.17 8.33 71.23 0.59 16.77 16 19 O -0.55 -21.45 16.74 21.96 0.37 -21.08 16 20 O -0.51 -12.62 13.42 -51.40 -0.69 -13.31 16 21 C -0.15 -4.14 7.76 22.28 0.17 -3.97 16 22 C -0.08 -2.01 9.70 22.26 0.22 -1.79 16 23 C -0.14 -3.75 5.89 -19.77 -0.12 -3.87 16 24 C -0.10 -2.02 9.79 71.24 0.70 -1.32 16 25 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.06 1.41 7.66 -2.38 -0.02 1.39 16 27 H 0.04 1.21 7.66 -2.39 -0.02 1.19 16 28 H 0.11 4.16 6.27 -2.91 -0.02 4.14 16 29 H 0.06 2.22 8.02 -2.39 -0.02 2.20 16 30 H 0.08 2.37 7.80 -2.38 -0.02 2.35 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.03 1.55 3.10 -2.39 -0.01 1.54 16 33 H 0.07 2.63 7.85 -2.39 -0.02 2.61 16 34 H 0.12 3.85 5.87 -2.39 -0.01 3.83 16 35 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.42 6.24 9.10 -74.06 -0.67 5.57 16 37 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 41 H 0.06 1.34 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -70.56 340.26 4.90 -65.66 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.34 Total: 17.56 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.21 Total: -1.40 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.15 Total: -85.35 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.20 Total: -45.19 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.70 Total: 48.73 kcal Total: -70.56 4.90 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599405292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.202 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds