Wall clock time and date at job start Tue Mar 31 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40311 * 126.65144 * 2 1 4 4 C 1.35173 * 107.13026 * 180.15307 * 3 2 1 5 5 C 1.50695 * 125.61181 * 179.90440 * 4 3 2 6 6 N 1.46898 * 109.46798 * 89.72096 * 5 4 3 7 7 C 1.46905 * 111.00250 * 179.97438 * 6 5 4 8 8 H 1.09001 * 110.66830 * 328.23895 * 7 6 5 9 9 C 1.54891 * 110.75466 * 91.67095 * 7 6 5 10 10 C 1.54267 * 104.19324 * 156.26085 * 9 7 6 11 11 C 1.53876 * 106.59870 * 336.39035 * 10 9 7 12 12 H 1.08997 * 110.02757 * 119.33370 * 11 10 9 13 13 C 1.50701 * 110.03013 * 240.71414 * 11 10 9 14 14 H 1.07996 * 119.99396 * 118.55095 * 13 11 10 15 15 C 1.37870 * 120.00390 * 298.54810 * 13 11 10 16 16 N 1.31515 * 119.99974 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00260 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47403 * 59.99644 * 17 15 13 19 19 H 1.48507 * 109.47487 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46854 * 299.99764 * 17 15 13 21 21 C 1.54261 * 106.59990 * 0.02562 * 11 10 9 22 22 O 1.33917 * 108.77954 * 359.64993 * 4 3 2 23 23 C 1.34935 * 109.38102 * 0.22200 * 22 4 3 24 24 C 1.46470 * 125.99839 * 179.97438 * 23 22 4 25 25 O 1.21623 * 120.00019 * 180.02562 * 24 23 22 26 26 O 1.34895 * 119.99715 * 0.02562 * 24 23 22 27 27 H 1.08998 * 109.46791 * 270.23207 * 1 2 3 28 28 H 1.09004 * 109.46843 * 30.23147 * 1 2 3 29 29 H 1.09003 * 109.46837 * 150.22896 * 1 2 3 30 30 H 1.08001 * 126.43619 * 0.03247 * 3 2 1 31 31 H 1.08998 * 109.47421 * 329.72883 * 5 4 3 32 32 H 1.09001 * 109.47497 * 209.72241 * 5 4 3 33 33 H 1.00908 * 110.99802 * 56.05166 * 6 5 4 34 34 H 1.09004 * 110.48613 * 37.58457 * 9 7 6 35 35 H 1.08994 * 110.48745 * 274.93875 * 9 7 6 36 36 H 1.08995 * 110.03032 * 217.10762 * 10 9 7 37 37 H 1.08998 * 110.03405 * 95.67701 * 10 9 7 38 38 H 0.97003 * 120.00313 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.48928 * 142.28640 * 21 11 10 40 40 H 1.09001 * 110.48691 * 264.79667 * 21 11 10 41 41 H 0.96704 * 116.99950 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6186 0.6740 -0.0035 5 6 4.8550 1.5355 -0.0068 6 7 5.2566 1.8209 1.3771 7 6 6.4618 2.6600 1.4132 8 1 7.1033 2.4489 0.5577 9 6 6.0840 4.1613 1.4639 10 6 7.3161 4.8402 2.0970 11 6 8.0466 3.7563 2.9090 12 1 9.0565 3.6179 2.5232 13 6 8.0990 4.1483 4.3632 14 1 7.6236 3.5266 5.1074 15 6 8.7540 5.3003 4.7435 16 7 9.3334 6.0570 3.8373 17 14 8.8196 5.7857 6.5461 18 1 9.4957 4.7157 7.3227 19 1 9.5761 7.0556 6.6897 20 1 7.4385 5.9723 7.0591 21 6 7.2332 2.4564 2.7405 22 8 3.6013 -0.6650 0.0022 23 6 2.3227 -1.0963 0.0044 24 6 1.8857 -2.4943 0.0099 25 8 0.6990 -2.7605 0.0110 26 8 2.7996 -3.4866 0.0138 27 1 -0.3633 0.0042 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8921 -0.5103 30 1 2.0304 2.1590 0.0005 31 1 4.6444 2.4714 -0.5242 32 1 5.6620 1.0110 -0.5185 33 1 5.3952 0.9671 1.8968 34 1 5.2028 4.3121 2.0876 35 1 5.9113 4.5454 0.4587 36 1 6.9996 5.6497 2.7548 37 1 7.9713 5.2273 1.3167 38 1 9.7940 6.8677 4.1048 39 1 7.8991 1.5965 2.6672 40 1 6.5390 2.3303 3.5714 41 1 2.4632 -4.3932 0.0177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600212206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:19 Heat of formation + Delta-G solvation = -91.048041 kcal Electronic energy + Delta-G solvation = -22759.652908 eV Core-core repulsion = 19219.404235 eV Total energy + Delta-G solvation = -3540.248673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.00655 -40.20539 -37.89479 -36.57821 -34.86473 -34.34259 -32.33202 -30.75355 -28.18073 -28.09027 -27.46079 -25.16040 -23.54007 -22.81844 -21.68915 -19.99769 -19.53878 -18.97407 -18.65751 -17.71952 -16.90921 -16.22253 -15.72280 -15.50776 -15.28498 -14.77191 -14.59967 -14.13977 -13.96287 -13.66579 -13.37611 -13.06570 -12.99392 -12.78539 -12.32331 -12.30047 -12.16368 -11.95861 -11.55235 -11.02362 -11.01362 -10.78178 -10.54043 -10.33235 -10.27866 -9.94399 -9.89095 -9.60943 -9.22031 -8.82902 -8.67964 -8.34501 -8.26468 -5.98482 -4.01379 0.54470 1.99550 2.15587 2.58615 2.94606 3.33614 3.38189 3.41036 4.23875 4.44795 4.46337 4.50971 4.82806 5.07608 5.14984 5.24468 5.31326 5.39998 5.42382 5.47199 5.56103 5.66254 5.77146 5.83236 5.90444 6.01071 6.18858 6.24065 6.47127 6.63176 6.68571 6.73304 6.78300 6.97882 7.07799 7.36349 7.42618 7.49085 7.51122 7.75217 7.95271 8.01045 8.49564 9.01621 9.62302 11.10718 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.002649 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.261898 B =10567.535520 C =10702.209401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.063 4.063 3 C -0.206 4.206 4 C 0.052 3.948 5 C 0.132 3.868 6 N -0.676 5.676 7 C 0.077 3.923 8 H 0.047 0.953 9 C -0.110 4.110 10 C -0.092 4.092 11 C 0.048 3.952 12 H 0.025 0.975 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.115 4.115 22 O -0.151 6.151 23 C -0.088 4.088 24 C 0.574 3.426 25 O -0.498 6.498 26 O -0.505 6.505 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 -13.171 -10.817 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 C -0.226 4.226 4 C -0.001 4.001 5 C 0.003 3.997 6 N -0.308 5.308 7 C -0.032 4.032 8 H 0.065 0.935 9 C -0.149 4.149 10 C -0.131 4.131 11 C 0.029 3.971 12 H 0.043 0.957 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.153 4.153 22 O -0.046 6.046 23 C -0.138 4.138 24 C 0.419 3.581 25 O -0.389 6.389 26 O -0.317 6.317 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.180 0.820 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -14.297 -12.348 -10.774 21.747 hybrid contribution 0.524 -0.784 0.745 1.202 sum -13.773 -13.132 -10.028 21.511 Atomic orbital electron populations 1.20502 0.87934 1.03782 1.03308 1.20687 0.97585 0.90728 0.97500 1.21518 0.91086 1.00290 1.09693 1.22998 0.97907 0.79907 0.99282 1.20602 0.89967 0.96174 0.92953 1.60688 1.37770 1.22308 1.10072 1.22734 0.87854 0.94003 0.98582 0.93500 1.22440 1.00252 0.93142 0.99017 1.22042 0.93773 0.99483 0.97796 1.19169 0.93720 0.88592 0.95577 0.95717 1.21215 1.34107 1.07455 0.92219 0.92767 1.24973 0.95423 0.96599 0.97113 1.69972 1.35628 1.14472 1.32810 0.86720 0.78125 0.77714 0.85797 1.20371 1.21394 1.20278 1.22660 0.98102 0.99885 0.94659 1.84092 1.27703 1.22232 1.70604 1.20264 0.82263 0.91314 1.19910 1.18835 0.83181 0.83565 0.72499 1.90963 1.17212 1.83254 1.47430 1.84690 1.41735 1.19672 1.85601 0.90258 0.90808 0.89732 0.81962 0.87318 0.93079 0.83932 0.91624 0.94113 0.91649 0.94534 0.93077 0.93936 0.91492 0.72376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.82 36.00 0.35 -0.55 16 2 C -0.06 -0.71 6.20 -104.42 -0.65 -1.36 16 3 C -0.21 -2.30 10.72 -39.89 -0.43 -2.73 16 4 C 0.05 0.63 6.82 -35.40 -0.24 0.39 16 5 C 0.13 1.53 6.08 -4.98 -0.03 1.50 16 6 N -0.68 -9.59 6.38 -105.90 -0.68 -10.26 16 7 C 0.08 1.27 3.23 -65.73 -0.21 1.06 16 8 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 9 C -0.11 -2.01 6.51 -25.07 -0.16 -2.18 16 10 C -0.09 -2.10 5.56 -25.61 -0.14 -2.24 16 11 C 0.05 1.17 2.84 -90.65 -0.26 0.91 16 12 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 13 C -0.51 -13.88 8.34 -34.44 -0.29 -14.16 16 14 H 0.05 1.46 7.55 -52.49 -0.40 1.06 16 15 C 0.06 1.66 5.07 -17.82 -0.09 1.57 16 16 N -0.89 -25.42 12.33 55.43 0.68 -24.74 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.12 -2.27 5.73 -25.09 -0.14 -2.41 16 22 O -0.15 -1.96 10.67 4.73 0.05 -1.91 16 23 C -0.09 -1.08 7.18 -36.84 -0.26 -1.35 16 24 C 0.57 6.44 8.30 34.05 0.28 6.72 16 25 O -0.50 -6.13 15.53 -19.36 -0.30 -6.43 16 26 O -0.51 -4.41 13.44 -42.47 -0.57 -4.98 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.82 6.45 -51.93 -0.33 0.48 16 30 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.34 4.77 8.42 -39.29 -0.33 4.44 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.67 7.17 -51.93 -0.37 1.30 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.37 7.68 -51.93 -0.40 0.97 16 41 H 0.42 1.38 9.11 45.56 0.42 1.79 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -30.87 345.41 -8.09 -38.96 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.18 Total: 2.78 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.27 Total: -14.83 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.01 Total: -35.00 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.82 Total: -13.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.87 -8.09 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600212206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.092 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds