Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40311 * 126.65144 * 2 1 4 4 C 1.35173 * 107.13026 * 180.15307 * 3 2 1 5 5 C 1.50695 * 125.61181 * 179.90440 * 4 3 2 6 6 N 1.46898 * 109.46798 * 89.72096 * 5 4 3 7 7 C 1.46905 * 111.00250 * 179.97438 * 6 5 4 8 8 H 1.09001 * 110.66830 * 328.23895 * 7 6 5 9 9 C 1.54891 * 110.75466 * 91.67095 * 7 6 5 10 10 C 1.54267 * 104.19324 * 156.26085 * 9 7 6 11 11 C 1.53876 * 106.59870 * 336.39035 * 10 9 7 12 12 H 1.08997 * 110.02757 * 119.33370 * 11 10 9 13 13 C 1.50701 * 110.03013 * 240.71414 * 11 10 9 14 14 H 1.07996 * 119.99396 * 118.55095 * 13 11 10 15 15 C 1.37870 * 120.00390 * 298.54810 * 13 11 10 16 16 N 1.31515 * 119.99974 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00260 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47403 * 59.99644 * 17 15 13 19 19 H 1.48507 * 109.47487 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46854 * 299.99764 * 17 15 13 21 21 C 1.54261 * 106.59990 * 0.02562 * 11 10 9 22 22 O 1.33917 * 108.77954 * 359.64993 * 4 3 2 23 23 C 1.34935 * 109.38102 * 0.22200 * 22 4 3 24 24 C 1.46470 * 125.99839 * 179.97438 * 23 22 4 25 25 O 1.21623 * 120.00019 * 180.02562 * 24 23 22 26 26 O 1.34895 * 119.99715 * 0.02562 * 24 23 22 27 27 H 1.08998 * 109.46791 * 270.23207 * 1 2 3 28 28 H 1.09004 * 109.46843 * 30.23147 * 1 2 3 29 29 H 1.09003 * 109.46837 * 150.22896 * 1 2 3 30 30 H 1.08001 * 126.43619 * 0.03247 * 3 2 1 31 31 H 1.08998 * 109.47421 * 329.72883 * 5 4 3 32 32 H 1.09001 * 109.47497 * 209.72241 * 5 4 3 33 33 H 1.00908 * 110.99802 * 56.05166 * 6 5 4 34 34 H 1.09004 * 110.48613 * 37.58457 * 9 7 6 35 35 H 1.08994 * 110.48745 * 274.93875 * 9 7 6 36 36 H 1.08995 * 110.03032 * 217.10762 * 10 9 7 37 37 H 1.08998 * 110.03405 * 95.67701 * 10 9 7 38 38 H 0.97003 * 120.00313 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.48928 * 142.28640 * 21 11 10 40 40 H 1.09001 * 110.48691 * 264.79667 * 21 11 10 41 41 H 0.96704 * 116.99950 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6186 0.6740 -0.0035 5 6 4.8550 1.5355 -0.0068 6 7 5.2566 1.8209 1.3771 7 6 6.4618 2.6600 1.4132 8 1 7.1033 2.4489 0.5577 9 6 6.0840 4.1613 1.4639 10 6 7.3161 4.8402 2.0970 11 6 8.0466 3.7563 2.9090 12 1 9.0565 3.6179 2.5232 13 6 8.0990 4.1483 4.3632 14 1 7.6236 3.5266 5.1074 15 6 8.7540 5.3003 4.7435 16 7 9.3334 6.0570 3.8373 17 14 8.8196 5.7857 6.5461 18 1 9.4957 4.7157 7.3227 19 1 9.5761 7.0556 6.6897 20 1 7.4385 5.9723 7.0591 21 6 7.2332 2.4564 2.7405 22 8 3.6013 -0.6650 0.0022 23 6 2.3227 -1.0963 0.0044 24 6 1.8857 -2.4943 0.0099 25 8 0.6990 -2.7605 0.0110 26 8 2.7996 -3.4866 0.0138 27 1 -0.3633 0.0042 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8921 -0.5103 30 1 2.0304 2.1590 0.0005 31 1 4.6444 2.4714 -0.5242 32 1 5.6620 1.0110 -0.5185 33 1 5.3952 0.9671 1.8968 34 1 5.2028 4.3121 2.0876 35 1 5.9113 4.5454 0.4587 36 1 6.9996 5.6497 2.7548 37 1 7.9713 5.2273 1.3167 38 1 9.7940 6.8677 4.1048 39 1 7.8991 1.5965 2.6672 40 1 6.5390 2.3303 3.5714 41 1 2.4632 -4.3932 0.0177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600212206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = -111.157679 kcal Electronic energy + Delta-G solvation = -22760.524927 eV Core-core repulsion = 19219.404235 eV Total energy + Delta-G solvation = -3541.120692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.87201 -41.01072 -39.38442 -37.34464 -36.24669 -35.17859 -34.16800 -31.87175 -29.83902 -28.95789 -28.78290 -26.56487 -25.25146 -23.68709 -22.56668 -21.13875 -20.85643 -20.62690 -19.45703 -18.53733 -18.24614 -17.73995 -16.79315 -16.74403 -16.49415 -16.31949 -15.86705 -15.48379 -14.83936 -14.58630 -14.49657 -14.08841 -14.04683 -13.91813 -13.69840 -13.52723 -13.32854 -12.94255 -12.86104 -12.72380 -12.59428 -12.34715 -11.99892 -11.84480 -11.76214 -11.60185 -11.44603 -11.00732 -10.71889 -10.67630 -10.41936 -9.75021 -9.39770 -8.09664 -6.18835 -0.31862 1.14048 1.35277 1.42357 1.43285 1.50726 1.74382 2.18648 2.45099 3.21148 3.23311 3.51758 3.67049 3.96912 4.05539 4.15433 4.28589 4.35316 4.37361 4.42483 4.61432 4.73526 4.74483 4.75454 4.90093 5.01748 5.03372 5.10826 5.14264 5.20795 5.24414 5.27009 5.47518 5.49299 5.54223 5.71357 5.84659 5.96883 5.99363 6.13975 6.34585 6.44836 6.82823 6.93414 7.48163 8.98825 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.002649 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.261898 B =10567.535520 C =10702.209401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.067 4.067 3 C -0.204 4.204 4 C 0.043 3.957 5 C 0.135 3.865 6 N -0.679 5.679 7 C 0.095 3.905 8 H 0.061 0.939 9 C -0.099 4.099 10 C -0.085 4.085 11 C 0.038 3.962 12 H -0.007 1.007 13 C -0.530 4.530 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.949 3.051 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.107 4.107 22 O -0.164 6.164 23 C -0.109 4.109 24 C 0.577 3.423 25 O -0.515 6.515 26 O -0.504 6.504 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.345 0.655 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.024 0.976 38 H 0.259 0.741 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 -13.804 -11.257 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.069 4.069 3 C -0.224 4.224 4 C -0.010 4.010 5 C 0.007 3.993 6 N -0.311 5.311 7 C -0.014 4.014 8 H 0.079 0.921 9 C -0.137 4.137 10 C -0.124 4.124 11 C 0.019 3.981 12 H 0.011 0.989 13 C -0.568 4.568 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.775 3.225 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.145 4.145 22 O -0.061 6.061 23 C -0.159 4.159 24 C 0.423 3.577 25 O -0.407 6.407 26 O -0.319 6.319 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -15.592 -13.020 -11.216 23.204 hybrid contribution 0.943 -0.639 0.871 1.434 sum -14.648 -13.660 -10.345 22.543 Atomic orbital electron populations 1.20547 0.86578 1.04420 1.03742 1.21037 0.98634 0.90593 0.96659 1.21796 0.90748 1.01083 1.08740 1.23090 0.98315 0.79710 0.99896 1.20664 0.90191 0.97074 0.91404 1.60565 1.36107 1.22391 1.11993 1.22408 0.88592 0.93328 0.97053 0.92118 1.22302 0.97505 0.93951 0.99930 1.21838 0.95491 0.98308 0.96781 1.19192 0.93099 0.91545 0.94300 0.98890 1.21613 1.33867 1.07520 0.93778 0.93073 1.25731 0.95240 0.96716 1.01130 1.70093 1.36390 1.14789 1.34609 0.85746 0.78286 0.77426 0.81015 1.19749 1.21092 1.19661 1.22479 0.97876 0.97754 0.96431 1.84066 1.28148 1.22804 1.71051 1.20629 0.82314 0.92251 1.20678 1.18753 0.83086 0.83746 0.72150 1.90952 1.17799 1.83535 1.48385 1.84647 1.41349 1.20916 1.84987 0.89824 0.88777 0.90467 0.80179 0.85720 0.92015 0.83647 0.92033 0.91304 0.95162 0.95719 0.93191 0.92916 0.92310 0.69819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.82 71.23 0.70 -0.89 16 2 C -0.07 -1.41 6.20 -19.73 -0.12 -1.53 16 3 C -0.20 -4.06 10.72 22.07 0.24 -3.82 16 4 C 0.04 0.93 6.82 24.98 0.17 1.10 16 5 C 0.13 2.73 6.08 85.56 0.52 3.25 16 6 N -0.68 -17.47 6.38 -488.97 -3.12 -20.59 16 7 C 0.10 2.96 3.23 46.20 0.15 3.11 16 8 H 0.06 1.76 7.82 -2.39 -0.02 1.74 16 9 C -0.10 -3.43 6.51 31.67 0.21 -3.23 16 10 C -0.09 -3.94 5.56 31.32 0.17 -3.77 16 11 C 0.04 1.86 2.84 -10.82 -0.03 1.83 16 12 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 13 C -0.53 -29.23 8.34 25.60 0.21 -29.02 16 14 H 0.05 2.78 7.55 -2.91 -0.02 2.76 16 15 C 0.01 0.58 5.07 84.65 0.43 1.01 16 16 N -0.92 -53.73 12.33 21.44 0.26 -53.47 16 17 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 C -0.11 -4.16 5.73 31.66 0.18 -3.98 16 22 O -0.16 -4.04 10.67 -4.90 -0.05 -4.09 16 23 C -0.11 -2.56 7.18 24.04 0.17 -2.39 16 24 C 0.58 12.34 8.30 69.97 0.58 12.92 16 25 O -0.51 -12.19 15.53 19.43 0.30 -11.89 16 26 O -0.50 -8.10 13.44 -56.72 -0.76 -8.86 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.40 6.45 -2.39 -0.02 1.38 16 30 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.15 8.08 -2.39 -0.02 1.14 16 33 H 0.35 8.84 8.42 -89.69 -0.76 8.08 16 34 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.03 1.57 7.17 -2.39 -0.02 1.55 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.36 7.68 -2.39 -0.02 2.35 16 41 H 0.44 2.18 9.11 -74.05 -0.67 1.50 16 Total: -1.00 -67.23 345.41 1.87 -65.36 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.37 Total: 13.01 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.58 Total: -25.41 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.86 Total: -74.06 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.51 Total: -24.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.23 1.87 -65.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600212206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.799 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds