Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38174 * 119.97145 * 2 1 4 4 C 1.38712 * 119.94224 * 180.02562 * 3 2 1 5 5 O 1.35901 * 120.05483 * 179.97438 * 4 3 2 6 6 C 1.38751 * 119.89020 * 0.02562 * 4 3 2 7 7 C 1.50699 * 120.02835 * 180.02562 * 6 4 3 8 8 N 1.46500 * 109.47093 * 272.68615 * 7 6 4 9 9 C 1.36938 * 120.00405 * 276.91132 * 8 7 6 10 10 H 1.07995 * 120.00222 * 149.27451 * 9 8 7 11 11 C 1.38817 * 119.99868 * 329.28153 * 9 8 7 12 12 N 1.31618 * 119.99592 * 32.27658 * 11 9 8 13 13 Si 1.86792 * 119.99947 * 212.27634 * 11 9 8 14 14 H 1.48501 * 109.47367 * 59.99938 * 13 11 9 15 15 H 1.48506 * 109.46965 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46945 * 299.99688 * 13 11 9 17 17 C 1.46502 * 119.99948 * 96.91255 * 8 7 6 18 18 C 1.53003 * 109.47236 * 89.99953 * 17 8 7 19 19 C 1.50694 * 109.47305 * 180.02562 * 18 17 8 20 20 O 1.20828 * 120.00209 * 359.97438 * 19 18 17 21 21 O 1.34235 * 120.00044 * 179.97438 * 19 18 17 22 22 C 1.38122 * 119.94379 * 359.95897 * 6 4 3 23 23 C 1.38248 * 119.97492 * 179.97438 * 2 1 3 24 24 C 1.50703 * 119.93990 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.46510 * 270.02122 * 1 2 3 26 26 H 1.08995 * 109.47013 * 30.01987 * 1 2 3 27 27 H 1.08997 * 109.46724 * 150.02693 * 1 2 3 28 28 H 1.08000 * 120.02404 * 0.02562 * 3 2 1 29 29 H 0.96695 * 113.99514 * 84.75905 * 5 4 3 30 30 H 1.08998 * 109.47164 * 32.68541 * 7 6 4 31 31 H 1.09003 * 109.47025 * 152.68524 * 7 6 4 32 32 H 0.97002 * 119.99420 * 186.56015 * 12 11 9 33 33 H 1.08993 * 109.47430 * 209.99765 * 17 8 7 34 34 H 1.08997 * 109.47302 * 330.00271 * 17 8 7 35 35 H 1.09008 * 109.47194 * 300.00379 * 18 17 8 36 36 H 1.09006 * 109.47266 * 59.99699 * 18 17 8 37 37 H 0.96703 * 116.99937 * 180.02562 * 21 19 18 38 38 H 1.08001 * 119.97337 * 180.29507 * 22 6 4 39 39 H 1.08999 * 109.46838 * 269.97608 * 24 23 2 40 40 H 1.08996 * 109.47562 * 29.97343 * 24 23 2 41 41 H 1.08995 * 109.46730 * 149.98144 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5844 1.1963 -0.0005 5 8 4.2656 2.3722 -0.0011 6 6 4.2753 -0.0070 -0.0016 7 6 5.7822 -0.0114 -0.0016 8 7 6.2708 0.0531 -1.3813 9 6 6.3611 -1.0900 -2.1299 10 1 6.2287 -1.0460 -3.2008 11 6 6.6229 -2.3053 -1.5122 12 7 6.1810 -2.5326 -0.2934 13 14 7.6022 -3.6178 -2.4107 14 1 8.9486 -3.0884 -2.7458 15 1 7.7423 -4.8133 -1.5408 16 1 6.8938 -3.9956 -3.6600 17 6 6.6626 1.3406 -1.9601 18 6 8.1486 1.5887 -1.6931 19 6 8.5516 2.9133 -2.2879 20 8 7.7343 3.5895 -2.8665 21 8 9.8186 3.3421 -2.1750 22 6 3.5806 -1.2008 -0.0013 23 6 2.1977 -1.1976 0.0005 24 6 1.4423 -2.5016 0.0017 25 1 -0.3632 0.0004 1.0278 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6572 2.1322 0.0004 29 1 4.3933 2.7531 0.8785 30 1 6.1481 0.8519 0.5541 31 1 6.1429 -0.9260 0.4692 32 1 6.4430 -3.3409 0.1745 33 1 6.4844 1.3250 -3.0352 34 1 6.0739 2.1375 -1.5057 35 1 8.3270 1.6043 -0.6178 36 1 8.7375 0.7917 -2.1474 37 1 10.0294 4.1982 -2.5723 38 1 4.1178 -2.1377 0.0027 39 1 1.2609 -2.8154 1.0297 40 1 0.4897 -2.3701 -0.5114 41 1 2.0299 -3.2623 -0.5121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600286351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = -93.293127 kcal Electronic energy + Delta-G solvation = -24136.121206 eV Core-core repulsion = 20595.775179 eV Total energy + Delta-G solvation = -3540.346027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81032 -39.26326 -36.50113 -36.11361 -35.60009 -32.45722 -31.96352 -31.02125 -29.69835 -27.62600 -25.86973 -24.84503 -23.97063 -21.69722 -21.31121 -20.05647 -19.26283 -17.75145 -17.30336 -16.71076 -16.01973 -15.59441 -15.53074 -14.70353 -14.59633 -14.21632 -13.69284 -13.55753 -13.34473 -12.96014 -12.81779 -12.54043 -12.42144 -12.37289 -12.23567 -11.68384 -11.49132 -11.24199 -11.17979 -11.14828 -10.81596 -10.74686 -10.52604 -10.43039 -10.19272 -10.08800 -9.97029 -9.86099 -9.38049 -8.29738 -7.78562 -7.48155 -6.93313 -5.99422 -3.29491 2.05867 2.24065 2.63753 3.33436 3.43320 3.47854 3.50091 4.38627 4.49296 4.91455 5.05738 5.38451 5.52899 5.56725 5.65313 5.72596 5.77744 5.82271 5.82842 5.90008 6.08408 6.11455 6.19282 6.31319 6.38833 6.44995 6.57115 6.71881 6.74865 6.78198 6.82873 7.06024 7.07221 7.20317 7.45038 7.57372 7.77947 7.87641 7.96659 8.27473 8.37282 8.46291 9.13126 9.72722 10.26580 10.97244 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.006433 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.392723 B = 4351.801825 C = 6346.577604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.163 4.163 4 C 0.087 3.913 5 O -0.494 6.494 6 C -0.085 4.085 7 C 0.154 3.846 8 N -0.584 5.584 9 C -0.252 4.252 10 H 0.072 0.928 11 C 0.029 3.971 12 N -0.876 5.876 13 Si 0.870 3.130 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.165 3.835 18 C -0.132 4.132 19 C 0.479 3.521 20 O -0.523 6.523 21 O -0.526 6.526 22 C -0.068 4.068 23 C -0.116 4.116 24 C -0.108 4.108 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.372 0.628 30 H 0.019 0.981 31 H 0.144 0.856 32 H 0.258 0.742 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.398 0.602 38 H 0.163 0.837 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 5.237 3.842 7.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.182 4.182 4 C 0.042 3.958 5 O -0.302 6.302 6 C -0.088 4.088 7 C 0.030 3.970 8 N -0.303 5.303 9 C -0.379 4.379 10 H 0.089 0.911 11 C -0.168 4.168 12 N -0.521 5.521 13 Si 0.697 3.303 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.037 3.963 18 C -0.173 4.173 19 C 0.321 3.679 20 O -0.411 6.411 21 O -0.337 6.337 22 C -0.086 4.086 23 C -0.116 4.116 24 C -0.164 4.164 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.225 0.775 30 H 0.037 0.963 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.256 0.744 38 H 0.180 0.820 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.396 4.743 3.305 6.704 hybrid contribution 0.613 0.218 -0.355 0.741 sum -2.784 4.961 2.949 6.407 Atomic orbital electron populations 1.20744 0.92415 1.01956 1.01323 1.19368 0.94907 0.92563 1.03111 1.21013 0.93680 0.97207 1.06271 1.18529 0.89260 0.85387 1.02604 1.84891 1.76896 1.35964 1.32463 1.21275 1.00168 0.90895 0.96457 1.21437 0.86204 1.03125 0.86255 1.44016 1.71868 1.02718 1.11695 1.19198 1.41777 0.85774 0.91167 0.91060 1.25107 0.98691 0.97214 0.95787 1.69574 1.41250 1.26804 1.14445 0.86856 0.82427 0.81236 0.79785 1.21003 1.21631 1.20969 1.20641 0.88972 0.88672 0.98003 1.22390 1.03184 0.89584 1.02103 1.24260 0.78652 0.88686 0.76254 1.90678 1.52048 1.57541 1.40827 1.84644 1.32384 1.41810 1.74899 1.21702 0.91743 1.00824 0.94375 1.19849 0.94622 0.93951 1.03161 1.20738 0.99368 0.95033 1.01277 0.92110 0.92540 0.91678 0.87276 0.77479 0.96265 0.83969 0.93038 0.93362 0.91808 0.88689 0.87806 0.74432 0.82035 0.92185 0.92280 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.60 36.01 0.35 -1.11 16 2 C -0.10 -1.74 5.88 -104.64 -0.62 -2.35 16 3 C -0.16 -2.98 9.64 -39.43 -0.38 -3.36 16 4 C 0.09 1.73 6.68 -39.22 -0.26 1.47 16 5 O -0.49 -9.00 11.13 -19.43 -0.22 -9.22 16 6 C -0.08 -1.85 5.42 -104.48 -0.57 -2.42 16 7 C 0.15 3.48 5.13 -5.19 -0.03 3.45 16 8 N -0.58 -13.75 2.53 -174.61 -0.44 -14.19 16 9 C -0.25 -6.43 9.45 -15.06 -0.14 -6.57 16 10 H 0.07 1.88 8.00 -52.49 -0.42 1.46 16 11 C 0.03 0.72 5.37 -17.43 -0.09 0.63 16 12 N -0.88 -21.65 7.57 55.49 0.42 -21.23 16 13 Si 0.87 19.86 29.66 -169.99 -5.04 14.81 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.16 3.51 4.93 -4.04 -0.02 3.49 16 18 C -0.13 -2.38 6.13 -27.88 -0.17 -2.55 16 19 C 0.48 8.05 8.33 36.00 0.30 8.35 16 20 O -0.52 -10.22 16.74 -18.75 -0.31 -10.54 16 21 O -0.53 -7.06 13.42 -39.27 -0.53 -7.58 16 22 C -0.07 -1.47 9.18 -39.61 -0.36 -1.84 16 23 C -0.12 -2.18 5.88 -104.60 -0.62 -2.80 16 24 C -0.11 -1.67 9.60 36.01 0.35 -1.32 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.37 4.92 9.06 45.56 0.41 5.33 16 30 H 0.02 0.40 7.50 -51.93 -0.39 0.01 16 31 H 0.14 3.49 4.67 -53.95 -0.25 3.24 16 32 H 0.26 6.23 8.33 -40.82 -0.34 5.89 16 33 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 34 H 0.06 1.39 6.51 -51.93 -0.34 1.05 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 37 H 0.40 3.45 9.10 45.56 0.41 3.87 16 38 H 0.16 3.79 5.55 -52.49 -0.29 3.49 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 41 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -29.47 338.97 -7.26 -36.73 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -3.98 Total: 13.04 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.26 Total: -6.93 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.02 Total: -35.42 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.06 Total: -27.34 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.04 Total: 14.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.47 -7.26 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600286351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.560 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds