Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38174 * 119.97145 * 2 1 4 4 C 1.38712 * 119.94224 * 180.02562 * 3 2 1 5 5 O 1.35901 * 120.05483 * 179.97438 * 4 3 2 6 6 C 1.38751 * 119.89020 * 0.02562 * 4 3 2 7 7 C 1.50699 * 120.02835 * 180.02562 * 6 4 3 8 8 N 1.46500 * 109.47093 * 272.68615 * 7 6 4 9 9 C 1.36938 * 120.00405 * 276.91132 * 8 7 6 10 10 H 1.07995 * 120.00222 * 149.27451 * 9 8 7 11 11 C 1.38817 * 119.99868 * 329.28153 * 9 8 7 12 12 N 1.31618 * 119.99592 * 32.27658 * 11 9 8 13 13 Si 1.86792 * 119.99947 * 212.27634 * 11 9 8 14 14 H 1.48501 * 109.47367 * 59.99938 * 13 11 9 15 15 H 1.48506 * 109.46965 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46945 * 299.99688 * 13 11 9 17 17 C 1.46502 * 119.99948 * 96.91255 * 8 7 6 18 18 C 1.53003 * 109.47236 * 89.99953 * 17 8 7 19 19 C 1.50694 * 109.47305 * 180.02562 * 18 17 8 20 20 O 1.20828 * 120.00209 * 359.97438 * 19 18 17 21 21 O 1.34235 * 120.00044 * 179.97438 * 19 18 17 22 22 C 1.38122 * 119.94379 * 359.95897 * 6 4 3 23 23 C 1.38248 * 119.97492 * 179.97438 * 2 1 3 24 24 C 1.50703 * 119.93990 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.46510 * 270.02122 * 1 2 3 26 26 H 1.08995 * 109.47013 * 30.01987 * 1 2 3 27 27 H 1.08997 * 109.46724 * 150.02693 * 1 2 3 28 28 H 1.08000 * 120.02404 * 0.02562 * 3 2 1 29 29 H 0.96695 * 113.99514 * 84.75905 * 5 4 3 30 30 H 1.08998 * 109.47164 * 32.68541 * 7 6 4 31 31 H 1.09003 * 109.47025 * 152.68524 * 7 6 4 32 32 H 0.97002 * 119.99420 * 186.56015 * 12 11 9 33 33 H 1.08993 * 109.47430 * 209.99765 * 17 8 7 34 34 H 1.08997 * 109.47302 * 330.00271 * 17 8 7 35 35 H 1.09008 * 109.47194 * 300.00379 * 18 17 8 36 36 H 1.09006 * 109.47266 * 59.99699 * 18 17 8 37 37 H 0.96703 * 116.99937 * 180.02562 * 21 19 18 38 38 H 1.08001 * 119.97337 * 180.29507 * 22 6 4 39 39 H 1.08999 * 109.46838 * 269.97608 * 24 23 2 40 40 H 1.08996 * 109.47562 * 29.97343 * 24 23 2 41 41 H 1.08995 * 109.46730 * 149.98144 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5844 1.1963 -0.0005 5 8 4.2656 2.3722 -0.0011 6 6 4.2753 -0.0070 -0.0016 7 6 5.7822 -0.0114 -0.0016 8 7 6.2708 0.0531 -1.3813 9 6 6.3611 -1.0900 -2.1299 10 1 6.2287 -1.0460 -3.2008 11 6 6.6229 -2.3053 -1.5122 12 7 6.1810 -2.5326 -0.2934 13 14 7.6022 -3.6178 -2.4107 14 1 8.9486 -3.0884 -2.7458 15 1 7.7423 -4.8133 -1.5408 16 1 6.8938 -3.9956 -3.6600 17 6 6.6626 1.3406 -1.9601 18 6 8.1486 1.5887 -1.6931 19 6 8.5516 2.9133 -2.2879 20 8 7.7343 3.5895 -2.8665 21 8 9.8186 3.3421 -2.1750 22 6 3.5806 -1.2008 -0.0013 23 6 2.1977 -1.1976 0.0005 24 6 1.4423 -2.5016 0.0017 25 1 -0.3632 0.0004 1.0278 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6572 2.1322 0.0004 29 1 4.3933 2.7531 0.8785 30 1 6.1481 0.8519 0.5541 31 1 6.1429 -0.9260 0.4692 32 1 6.4430 -3.3409 0.1745 33 1 6.4844 1.3250 -3.0352 34 1 6.0739 2.1375 -1.5057 35 1 8.3270 1.6043 -0.6178 36 1 8.7375 0.7917 -2.1474 37 1 10.0294 4.1982 -2.5723 38 1 4.1178 -2.1377 0.0027 39 1 1.2609 -2.8154 1.0297 40 1 0.4897 -2.3701 -0.5114 41 1 2.0299 -3.2623 -0.5121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600286351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = -111.534681 kcal Electronic energy + Delta-G solvation = -24136.912219 eV Core-core repulsion = 20595.775179 eV Total energy + Delta-G solvation = -3541.137040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17077 -40.72642 -37.94844 -37.68405 -36.98807 -34.08230 -33.61587 -32.38794 -31.31108 -29.09019 -27.33425 -26.54352 -25.44800 -23.25661 -22.77673 -21.54377 -20.84083 -19.15934 -18.85246 -18.31245 -17.45161 -17.06931 -16.95733 -16.44056 -16.10825 -15.69141 -15.34564 -14.99651 -14.82951 -14.49405 -14.23371 -14.05269 -13.81848 -13.70041 -13.50555 -13.23372 -13.04474 -12.90466 -12.59888 -12.49295 -12.40714 -12.26507 -12.10646 -12.00794 -11.91824 -11.63125 -11.54669 -11.52516 -10.95357 -10.21042 -9.30127 -8.96677 -8.72820 -7.88605 -5.21259 0.58981 0.74781 1.28006 1.49149 1.56400 1.61450 2.20930 2.56937 2.95527 3.13523 3.53162 3.98090 4.11520 4.17813 4.23444 4.26962 4.36959 4.49163 4.57988 4.67506 4.79177 4.85527 4.89917 4.93416 4.97498 5.06983 5.13267 5.14549 5.23842 5.30278 5.44250 5.59126 5.66789 5.72475 5.73867 5.96116 6.02978 6.17014 6.33490 6.61443 7.06944 7.08178 7.23642 7.88275 8.39309 9.04840 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.006433 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.392723 B = 4351.801825 C = 6346.577604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C -0.168 4.168 4 C 0.081 3.919 5 O -0.504 6.504 6 C -0.113 4.113 7 C 0.161 3.839 8 N -0.594 5.594 9 C -0.272 4.272 10 H 0.054 0.946 11 C 0.002 3.998 12 N -0.878 5.878 13 Si 0.922 3.078 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.171 3.829 18 C -0.123 4.123 19 C 0.493 3.507 20 O -0.553 6.553 21 O -0.513 6.513 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.104 4.104 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.393 0.607 30 H 0.027 0.973 31 H 0.123 0.877 32 H 0.257 0.743 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 5.965 4.283 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.186 4.186 4 C 0.036 3.964 5 O -0.315 6.315 6 C -0.116 4.116 7 C 0.037 3.963 8 N -0.315 5.315 9 C -0.401 4.401 10 H 0.071 0.929 11 C -0.195 4.195 12 N -0.522 5.522 13 Si 0.750 3.250 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.216 1.216 17 C 0.044 3.956 18 C -0.164 4.164 19 C 0.337 3.663 20 O -0.444 6.444 21 O -0.326 6.326 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.160 4.160 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.250 0.750 30 H 0.045 0.955 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.285 0.715 38 H 0.155 0.845 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.256 5.498 3.765 7.907 hybrid contribution 0.879 0.057 -0.462 0.995 sum -3.376 5.555 3.303 7.292 Atomic orbital electron populations 1.20814 0.89050 1.03244 1.03020 1.19848 0.97306 0.91614 1.00857 1.21325 0.93072 0.98655 1.05571 1.18600 0.90122 0.85151 1.02504 1.84820 1.76900 1.35295 1.34436 1.21248 0.99731 0.92019 0.98644 1.21183 0.87226 1.02248 0.85682 1.44090 1.72822 1.02760 1.11801 1.19157 1.43318 0.86968 0.90612 0.92869 1.25498 0.98951 0.98389 0.96633 1.69743 1.40753 1.26866 1.14881 0.86075 0.81010 0.79443 0.78513 1.20993 1.21589 1.21618 1.20495 0.91039 0.87649 0.96417 1.22049 1.00776 0.90607 1.02917 1.23728 0.79299 0.87861 0.75405 1.90680 1.53203 1.58300 1.42199 1.84552 1.29987 1.43500 1.74578 1.21605 0.93305 0.99841 0.96456 1.20182 0.93785 0.96134 1.02531 1.20762 0.99706 0.92976 1.02554 0.90035 0.91202 0.90487 0.84941 0.75020 0.95479 0.86048 0.93194 0.95467 0.92479 0.87571 0.88077 0.71493 0.84495 0.90446 0.89860 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 9.60 71.24 0.68 -1.76 16 2 C -0.10 -3.16 5.88 -19.88 -0.12 -3.28 16 3 C -0.17 -5.85 9.64 22.37 0.22 -5.64 16 4 C 0.08 3.21 6.68 22.51 0.15 3.36 16 5 O -0.50 -18.07 11.13 -92.43 -1.03 -19.10 16 6 C -0.11 -5.06 5.42 -19.77 -0.11 -5.17 16 7 C 0.16 7.47 5.13 85.63 0.44 7.91 16 8 N -0.59 -28.85 2.53 -706.34 -1.78 -30.64 16 9 C -0.27 -14.41 9.45 84.03 0.79 -13.61 16 10 H 0.05 2.94 8.00 -2.91 -0.02 2.92 16 11 C 0.00 0.11 5.37 84.86 0.46 0.56 16 12 N -0.88 -44.66 7.57 21.65 0.16 -44.50 16 13 Si 0.92 41.62 29.66 68.60 2.03 43.65 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 17 C 0.17 7.46 4.93 86.38 0.43 7.88 16 18 C -0.12 -4.42 6.13 29.85 0.18 -4.23 16 19 C 0.49 16.04 8.33 71.23 0.59 16.63 16 20 O -0.55 -21.30 16.74 21.96 0.37 -20.93 16 21 O -0.51 -12.51 13.42 -51.47 -0.69 -13.20 16 22 C -0.09 -4.15 9.18 22.25 0.20 -3.94 16 23 C -0.13 -4.67 5.88 -19.85 -0.12 -4.79 16 24 C -0.10 -3.05 9.60 71.24 0.68 -2.37 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 27 H 0.08 1.62 5.94 -2.39 -0.01 1.61 16 28 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.39 9.99 9.06 -74.06 -0.67 9.32 16 30 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16 31 H 0.12 6.19 4.67 -6.38 -0.03 6.16 16 32 H 0.26 12.67 8.33 -92.71 -0.77 11.90 16 33 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 34 H 0.06 2.53 6.51 -2.39 -0.02 2.52 16 35 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 36 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 37 H 0.42 6.09 9.10 -74.06 -0.67 5.41 16 38 H 0.14 6.71 5.55 -2.91 -0.02 6.69 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.02 5.94 -2.39 -0.01 2.00 16 41 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 Total: -1.00 -64.59 338.97 3.26 -61.33 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.29 Total: 31.82 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.49 Total: -8.44 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.62 Total: -75.13 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -1.35 Total: -53.23 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -64.59 3.26 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600286351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.206 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds