Wall clock time and date at job start Tue Mar 31 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.97350 * 2 1 4 4 C 1.38241 * 120.10998 * 179.72557 * 3 2 1 5 5 C 1.38171 * 120.05834 * 0.54854 * 4 3 2 6 6 C 1.38708 * 119.93910 * 359.72637 * 5 4 3 7 7 O 1.35900 * 120.05401 * 179.97438 * 6 5 4 8 8 C 1.42902 * 117.00242 * 0.02562 * 7 6 5 9 9 C 1.52991 * 109.47457 * 179.97438 * 8 7 6 10 10 N 1.46508 * 109.47213 * 65.00148 * 9 8 7 11 11 C 1.36933 * 119.99636 * 264.43041 * 10 9 8 12 12 H 1.08008 * 119.99637 * 146.17567 * 11 10 9 13 13 C 1.38813 * 120.00428 * 326.17036 * 11 10 9 14 14 N 1.31620 * 119.99871 * 337.62722 * 13 11 10 15 15 Si 1.86799 * 120.00004 * 157.62795 * 13 11 10 16 16 H 1.48494 * 109.47110 * 90.00153 * 15 13 11 17 17 H 1.48502 * 109.46742 * 209.99812 * 15 13 11 18 18 H 1.48493 * 109.47045 * 329.99845 * 15 13 11 19 19 C 1.46498 * 119.99723 * 84.42540 * 10 9 8 20 20 C 1.53008 * 109.46875 * 90.00365 * 19 10 9 21 21 C 1.50700 * 109.46823 * 179.97438 * 20 19 10 22 22 O 1.20822 * 120.00242 * 0.02562 * 21 20 19 23 23 O 1.34230 * 119.99634 * 180.02562 * 21 20 19 24 24 C 1.38125 * 119.96691 * 180.27279 * 2 1 3 25 25 H 1.08997 * 109.47225 * 269.72395 * 1 2 3 26 26 H 1.08997 * 109.47100 * 29.72603 * 1 2 3 27 27 H 1.09005 * 109.46833 * 149.72622 * 1 2 3 28 28 H 1.07997 * 119.93963 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.97314 * 180.25633 * 4 3 2 30 30 H 1.07998 * 120.02907 * 179.74922 * 5 4 3 31 31 H 1.08996 * 109.46957 * 300.00372 * 8 7 6 32 32 H 1.09002 * 109.46959 * 59.99929 * 8 7 6 33 33 H 1.09000 * 109.47411 * 184.99847 * 9 8 7 34 34 H 1.09000 * 109.47538 * 305.00391 * 9 8 7 35 35 H 0.96992 * 120.00492 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.46969 * 210.00280 * 19 10 9 37 37 H 1.08999 * 109.47637 * 330.00607 * 19 10 9 38 38 H 1.08996 * 109.47253 * 299.99741 * 20 19 10 39 39 H 1.08999 * 109.46790 * 59.99723 * 20 19 10 40 40 H 0.96700 * 117.00063 * 180.02562 * 23 21 20 41 41 H 1.07997 * 120.03605 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0057 5 6 4.2753 0.0070 0.0000 6 6 3.5846 -1.1959 -0.0057 7 8 4.2658 -2.3718 -0.0119 8 6 5.6927 -2.2950 -0.0115 9 6 6.2795 -3.7079 -0.0182 10 7 5.9278 -4.3769 -1.2733 11 6 4.8321 -5.1963 -1.3287 12 1 4.2464 -5.2543 -2.2343 13 6 4.4741 -5.9524 -0.2209 14 7 5.3716 -6.2391 0.6981 15 14 2.7185 -6.5629 -0.0346 16 1 2.5871 -7.8955 -0.6765 17 1 2.3833 -6.6731 1.4079 18 1 1.7897 -5.6054 -0.6869 19 6 6.7483 -4.1689 -2.4690 20 6 7.8571 -5.2222 -2.5161 21 6 8.7007 -5.0087 -3.7465 22 8 8.4420 -4.1065 -4.5073 23 8 9.7396 -5.8210 -3.9970 24 6 2.1970 -1.1966 -0.0057 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8924 -0.5096 27 1 -0.3633 -0.8876 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1380 0.0099 30 1 5.3552 0.0102 0.0004 31 1 6.0279 -1.7578 -0.8986 32 1 6.0279 -1.7671 0.8813 33 1 7.3643 -3.6513 0.0716 34 1 5.8745 -4.2737 0.8208 35 1 5.1216 -6.7677 1.4719 36 1 6.1240 -4.2585 -3.3580 37 1 7.1931 -3.1744 -2.4361 38 1 8.4813 -5.1327 -1.6271 39 1 7.4122 -6.2168 -2.5490 40 1 10.2516 -5.6445 -4.7982 41 1 1.6571 -2.1319 -0.0097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600546186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:44 Heat of formation + Delta-G solvation = -110.228112 kcal Electronic energy + Delta-G solvation = -23413.492393 eV Core-core repulsion = 19872.412010 eV Total energy + Delta-G solvation = -3541.080383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16840 -40.93799 -38.74894 -37.55738 -36.95189 -33.87472 -33.36203 -32.45644 -30.96236 -29.60824 -27.79974 -26.58812 -24.93499 -23.37201 -22.97305 -21.83175 -21.08916 -19.12086 -18.68490 -18.63972 -17.45347 -17.07052 -16.95313 -16.77534 -16.56049 -16.43146 -15.45027 -15.24431 -14.96884 -14.67503 -14.41992 -14.14115 -14.04960 -13.90790 -13.48645 -13.31160 -12.95366 -12.88766 -12.78605 -12.62044 -12.49196 -12.36689 -12.31123 -12.06789 -12.00364 -11.73618 -11.56409 -11.48836 -11.43675 -10.49910 -9.69740 -9.00103 -8.65114 -7.84718 -5.37305 0.41093 0.58847 1.27401 1.43098 1.47742 1.56866 2.22259 2.52707 2.55942 2.86549 3.29271 3.66841 3.94372 3.96843 4.16483 4.21484 4.23574 4.31691 4.41949 4.48750 4.50667 4.61550 4.62915 4.72568 4.78801 4.82368 4.86546 4.94758 5.05134 5.08578 5.25487 5.26714 5.48195 5.55314 5.66170 5.67913 5.69075 5.74786 6.00439 6.44687 6.76061 7.07995 7.16920 7.84109 8.32866 9.14698 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.004806 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.948047 B = 5824.815051 C = 7326.905298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.170 4.170 4 C -0.075 4.075 5 C -0.232 4.232 6 C 0.115 3.885 7 O -0.315 6.315 8 C 0.051 3.949 9 C 0.139 3.861 10 N -0.585 5.585 11 C -0.249 4.249 12 H 0.047 0.953 13 C -0.021 4.021 14 N -0.911 5.911 15 Si 0.941 3.059 16 H -0.283 1.283 17 H -0.292 1.292 18 H -0.282 1.282 19 C 0.163 3.837 20 C -0.122 4.122 21 C 0.494 3.506 22 O -0.552 6.552 23 O -0.514 6.514 24 C -0.190 4.190 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.424 0.576 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 11.774 -1.580 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.188 4.188 4 C -0.093 4.093 5 C -0.250 4.250 6 C 0.068 3.932 7 O -0.228 6.228 8 C -0.026 4.026 9 C 0.012 3.988 10 N -0.305 5.305 11 C -0.379 4.379 12 H 0.064 0.936 13 C -0.218 4.218 14 N -0.555 5.555 15 Si 0.770 3.230 16 H -0.210 1.210 17 H -0.218 1.218 18 H -0.208 1.208 19 C 0.036 3.964 20 C -0.163 4.163 21 C 0.338 3.662 22 O -0.443 6.443 23 O -0.328 6.328 24 C -0.209 4.209 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.285 0.715 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.094 11.623 -1.293 11.695 hybrid contribution -0.206 -0.653 -0.321 0.756 sum -0.112 10.970 -1.615 11.089 Atomic orbital electron populations 1.20855 0.88930 1.03679 1.03337 1.20045 0.97481 0.91746 0.96009 1.21233 0.94263 0.97943 1.05402 1.21282 0.94615 0.97577 0.95811 1.21441 1.00814 0.92257 1.10521 1.19618 0.92608 0.86088 0.94837 1.86347 1.21392 1.27667 1.87366 1.23673 0.77694 1.01395 0.99820 1.21089 0.96649 0.89297 0.91717 1.43911 1.28371 1.51313 1.06925 1.18997 1.02246 1.17256 0.99411 0.93555 1.25414 0.99826 0.97552 0.99026 1.70020 1.32699 1.39929 1.12870 0.85696 0.82826 0.77901 0.76532 1.20990 1.21845 1.20800 1.20713 0.90562 0.95141 0.89972 1.22069 0.96841 1.04330 0.93052 1.23774 0.78194 0.77560 0.86669 1.90661 1.70311 1.33530 1.49841 1.84568 1.41852 1.56635 1.49704 1.20480 0.91452 0.99091 1.09834 0.89908 0.89144 0.91934 0.83023 0.82954 0.84936 0.93035 0.91698 0.91464 0.90145 0.93931 0.94265 0.92646 0.87847 0.88896 0.71496 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 10.01 71.24 0.71 -1.57 16 2 C -0.05 -1.47 5.88 -19.88 -0.12 -1.58 16 3 C -0.17 -4.06 9.70 22.28 0.22 -3.85 16 4 C -0.08 -1.87 10.04 22.25 0.22 -1.64 16 5 C -0.23 -7.24 9.04 22.37 0.20 -7.03 16 6 C 0.11 4.41 6.69 22.51 0.15 4.56 16 7 O -0.31 -14.11 9.88 -92.43 -0.91 -15.02 16 8 C 0.05 1.99 5.08 71.98 0.37 2.35 16 9 C 0.14 6.12 5.63 86.37 0.49 6.60 16 10 N -0.59 -27.80 2.41 -701.99 -1.69 -29.49 16 11 C -0.25 -13.42 9.28 84.03 0.78 -12.64 16 12 H 0.05 2.59 7.92 -2.91 -0.02 2.57 16 13 C -0.02 -1.14 4.91 84.86 0.42 -0.72 16 14 N -0.91 -50.91 11.34 21.65 0.25 -50.66 16 15 Si 0.94 45.52 29.61 68.60 2.03 47.55 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 19 C 0.16 6.67 4.98 86.38 0.43 7.10 16 20 C -0.12 -4.40 6.14 29.85 0.18 -4.21 16 21 C 0.49 15.72 8.33 71.24 0.59 16.32 16 22 O -0.55 -20.24 16.74 21.98 0.37 -19.87 16 23 O -0.51 -12.63 13.42 -51.42 -0.69 -13.32 16 24 C -0.19 -6.86 9.64 22.37 0.22 -6.64 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.06 1.34 8.08 -2.38 -0.02 1.32 16 28 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.13 3.77 6.30 -2.91 -0.02 3.75 16 31 H 0.05 1.88 7.64 -2.39 -0.02 1.87 16 32 H 0.06 2.17 7.66 -2.39 -0.02 2.15 16 33 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 34 H 0.08 4.16 5.34 -2.39 -0.01 4.15 16 35 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 37 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 38 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.42 6.03 9.10 -74.06 -0.67 5.36 16 41 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -67.62 351.22 4.57 -63.05 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.36 Total: 20.74 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.86 Total: -2.96 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.45 Total: -80.15 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.24 Total: -48.22 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -67.62 4.57 -63.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600546186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.180 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds