Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.33631 * 125.80994 * 2 1 4 4 C 1.34221 * 110.92341 * 180.32217 * 3 2 1 5 5 C 1.50694 * 125.43043 * 179.75668 * 4 3 2 6 6 N 1.46901 * 109.47259 * 269.95760 * 5 4 3 7 7 C 1.46852 * 110.99894 * 66.04496 * 6 5 4 8 8 C 1.53039 * 109.52199 * 174.16090 * 7 6 5 9 9 C 1.53121 * 109.27635 * 59.17905 * 8 7 6 10 10 C 1.53120 * 109.15919 * 302.34245 * 9 8 7 11 11 H 1.08999 * 109.50320 * 297.71496 * 10 9 8 12 12 C 1.50696 * 109.50160 * 177.63594 * 10 9 8 13 13 H 1.08002 * 120.00589 * 239.99834 * 12 10 9 14 14 C 1.37886 * 120.00021 * 60.00311 * 12 10 9 15 15 N 1.31519 * 119.99724 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00056 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47243 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47206 * 119.99709 * 16 14 12 19 19 H 1.48498 * 109.47049 * 239.99805 * 16 14 12 20 20 C 1.46846 * 110.99907 * 301.83476 * 6 5 4 21 21 C 1.34166 * 109.14381 * 359.71707 * 4 3 2 22 22 C 1.36501 * 125.80752 * 179.84580 * 2 1 3 23 23 C 1.47229 * 127.20091 * 359.96296 * 22 2 1 24 24 O 1.21543 * 119.99806 * 359.70933 * 23 22 2 25 25 O 1.34773 * 120.00212 * 179.97438 * 23 22 2 26 26 H 1.09002 * 109.47471 * 270.15286 * 1 2 3 27 27 H 1.09000 * 109.47188 * 30.15237 * 1 2 3 28 28 H 1.08995 * 109.47410 * 150.15591 * 1 2 3 29 29 H 1.09002 * 109.47205 * 29.95687 * 5 4 3 30 30 H 1.09004 * 109.47215 * 149.95243 * 5 4 3 31 31 H 1.09005 * 109.45918 * 294.17426 * 7 6 5 32 32 H 1.08999 * 109.46315 * 54.14261 * 7 6 5 33 33 H 1.08995 * 109.50106 * 179.11995 * 8 7 6 34 34 H 1.09000 * 109.50179 * 299.23769 * 8 7 6 35 35 H 1.08993 * 109.52281 * 62.24965 * 9 8 7 36 36 H 1.09003 * 109.51708 * 182.37588 * 9 8 7 37 37 H 0.96997 * 119.99735 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46077 * 305.85228 * 20 6 5 39 39 H 1.08993 * 109.46362 * 65.82285 * 20 6 5 40 40 H 1.08001 * 127.02320 * 179.97438 * 21 4 3 41 41 H 0.96698 * 116.99574 * 179.72028 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7389 -0.0070 5 6 4.7456 1.7011 -0.0144 6 7 5.1153 2.0119 -1.4017 7 6 4.0429 2.7521 -2.0789 8 6 4.5179 3.1841 -3.4681 9 6 4.8990 1.9433 -4.2805 10 6 5.9831 1.1647 -3.5300 11 1 6.8745 1.7843 -3.4324 12 6 6.3227 -0.0887 -4.2945 13 1 6.1864 -1.0560 -3.8339 14 6 6.8076 -0.0007 -5.5823 15 7 6.9732 1.1771 -6.1435 16 14 7.2279 -1.5544 -6.5303 17 1 6.9532 -2.7417 -5.6816 18 1 6.3996 -1.6228 -7.7609 19 1 8.6656 -1.5340 -6.9017 20 6 5.4655 0.7912 -2.1391 21 6 3.6855 -0.5991 -0.0056 22 6 2.3055 -1.1070 0.0030 23 6 1.8753 -2.5150 0.0075 24 8 0.6911 -2.7886 0.0143 25 8 2.7945 -3.5006 0.0095 26 1 -0.3634 0.0027 1.0277 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3634 -0.8913 -0.5114 29 1 4.4596 2.6188 0.4997 30 1 5.5962 1.2490 0.4958 31 1 3.1662 2.1119 -2.1777 32 1 3.7843 3.6341 -1.4930 33 1 3.7163 3.7198 -3.9765 34 1 5.3864 3.8354 -3.3695 35 1 4.0214 1.3106 -4.4124 36 1 5.2778 2.2488 -5.2558 37 1 7.3140 1.2390 -7.0495 38 1 6.2403 0.2491 -1.5968 39 1 4.5822 0.1604 -2.2375 40 1 4.5937 -1.1836 -0.0105 41 1 2.4639 -4.4092 0.0167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600844484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -85.722497 kcal Electronic energy + Delta-G solvation = -24195.176424 eV Core-core repulsion = 20655.158683 eV Total energy + Delta-G solvation = -3540.017740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.70414 -39.89653 -38.30738 -36.14382 -34.21021 -33.16112 -32.45227 -31.14221 -29.90133 -27.99213 -25.54123 -24.93403 -23.95084 -21.90952 -21.86148 -21.10643 -19.51247 -18.69247 -18.04935 -16.88339 -16.66910 -16.22871 -15.63395 -15.41191 -14.99948 -14.61954 -14.33735 -14.13331 -13.54448 -13.41812 -13.09684 -13.05526 -12.90990 -12.60539 -12.40100 -12.27566 -11.99977 -11.65541 -11.61940 -11.31651 -10.96825 -10.73364 -10.68543 -10.60976 -10.13443 -9.91160 -9.76256 -9.50419 -9.11488 -8.73089 -8.49614 -8.30548 -7.90396 -5.97835 -4.03661 1.08821 1.98045 2.60499 3.02100 3.10032 3.29940 3.38150 3.42039 4.31599 4.41978 4.55908 4.68669 5.09180 5.11127 5.28965 5.29794 5.32530 5.47146 5.55519 5.65234 5.72470 5.83141 5.88985 5.97256 6.06056 6.22311 6.32863 6.39327 6.40495 6.47129 6.68132 6.73374 6.91577 7.02256 7.18708 7.33575 7.54197 7.66951 7.76708 7.85825 8.05937 8.15916 8.47019 9.00327 9.60759 11.08270 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.005135 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.552974 B = 5451.075863 C = 6671.116957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.088 3.912 3 O -0.165 6.165 4 C -0.037 4.037 5 C 0.130 3.870 6 N -0.522 5.522 7 C 0.060 3.940 8 C -0.118 4.118 9 C -0.111 4.111 10 C 0.055 3.945 11 H 0.035 0.965 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.061 3.939 21 C -0.154 4.154 22 C -0.239 4.239 23 C 0.563 3.437 24 O -0.526 6.526 25 O -0.506 6.506 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.162 0.838 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 -1.012 13.458 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 O -0.060 6.060 4 C -0.087 4.087 5 C 0.001 3.999 6 N -0.244 5.244 7 C -0.067 4.067 8 C -0.155 4.155 9 C -0.149 4.149 10 C 0.036 3.964 11 H 0.053 0.947 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.065 4.065 21 C -0.174 4.174 22 C -0.241 4.241 23 C 0.409 3.591 24 O -0.418 6.418 25 O -0.317 6.317 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.179 0.821 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.292 0.025 13.279 16.207 hybrid contribution -0.611 -2.246 -0.669 2.421 sum -9.902 -2.221 12.611 16.187 Atomic orbital electron populations 1.20636 0.83796 1.05284 1.04333 1.22770 0.93978 0.83304 0.96523 1.83802 1.17146 1.34337 1.70749 1.23821 0.82661 0.96343 1.05915 1.21162 0.89581 0.95693 0.93481 1.62471 1.37855 1.23598 1.00435 1.22098 0.91835 0.96641 0.96171 1.21685 0.99946 0.99983 0.93921 1.21663 0.98100 0.93750 1.01431 1.18671 0.94282 0.95578 0.87866 0.94725 1.21166 1.42770 0.92473 0.98721 0.92785 1.24925 0.95481 0.95811 0.97583 1.69899 1.45951 1.22527 1.14360 0.86589 0.78019 0.83762 0.79951 1.19838 1.21118 1.21008 1.22445 0.98527 0.88510 0.97054 1.22675 0.96410 0.93358 1.04990 1.20050 0.94409 0.90235 1.19428 1.19649 0.82818 0.85276 0.71335 1.90851 1.18304 1.84562 1.48053 1.84619 1.41855 1.19490 1.85710 0.89204 0.89952 0.87579 0.89455 0.87511 0.95496 0.92179 0.93431 0.91943 0.95273 0.89008 0.93119 0.92069 0.95364 0.82068 0.72980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.88 36.00 0.36 -0.52 16 2 C 0.09 1.22 7.38 -34.94 -0.26 0.96 16 3 O -0.16 -2.41 10.09 7.69 0.08 -2.33 16 4 C -0.04 -0.55 4.93 -35.75 -0.18 -0.73 16 5 C 0.13 1.80 5.89 -4.98 -0.03 1.77 16 6 N -0.52 -9.16 4.86 -236.11 -1.15 -10.31 16 7 C 0.06 1.05 5.14 -3.83 -0.02 1.03 16 8 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 9 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 10 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 11 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.51 -13.96 8.57 -34.44 -0.29 -14.26 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.74 5.30 -17.81 -0.09 1.65 16 15 N -0.89 -25.23 11.35 55.43 0.63 -24.60 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.06 1.26 3.95 -3.83 -0.02 1.24 16 21 C -0.15 -2.32 9.51 -37.44 -0.36 -2.68 16 22 C -0.24 -3.57 6.32 -103.30 -0.65 -4.22 16 23 C 0.56 8.01 8.33 34.38 0.29 8.30 16 24 O -0.53 -7.99 15.64 -19.30 -0.30 -8.29 16 25 O -0.51 -5.99 13.34 -40.69 -0.54 -6.53 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.11 1.19 6.49 -51.93 -0.34 0.85 16 29 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 30 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.03 0.50 7.12 -51.93 -0.37 0.13 16 32 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 39 H 0.03 0.61 6.53 -51.93 -0.34 0.27 16 40 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.41 2.76 9.11 45.56 0.42 3.17 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -31.36 335.48 -8.14 -39.50 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.13 Total: 2.77 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.76 Total: -11.51 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.52 Total: -34.91 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.77 Total: -17.16 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.36 -8.14 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600844484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.226 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds