Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.33631 * 125.80994 * 2 1 4 4 C 1.34221 * 110.92341 * 180.32217 * 3 2 1 5 5 C 1.50694 * 125.43043 * 179.75668 * 4 3 2 6 6 N 1.46901 * 109.47259 * 269.95760 * 5 4 3 7 7 C 1.46852 * 110.99894 * 66.04496 * 6 5 4 8 8 C 1.53039 * 109.52199 * 174.16090 * 7 6 5 9 9 C 1.53121 * 109.27635 * 59.17905 * 8 7 6 10 10 C 1.53120 * 109.15919 * 302.34245 * 9 8 7 11 11 H 1.08999 * 109.50320 * 297.71496 * 10 9 8 12 12 C 1.50696 * 109.50160 * 177.63594 * 10 9 8 13 13 H 1.08002 * 120.00589 * 239.99834 * 12 10 9 14 14 C 1.37886 * 120.00021 * 60.00311 * 12 10 9 15 15 N 1.31519 * 119.99724 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00056 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47243 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47206 * 119.99709 * 16 14 12 19 19 H 1.48498 * 109.47049 * 239.99805 * 16 14 12 20 20 C 1.46846 * 110.99907 * 301.83476 * 6 5 4 21 21 C 1.34166 * 109.14381 * 359.71707 * 4 3 2 22 22 C 1.36501 * 125.80752 * 179.84580 * 2 1 3 23 23 C 1.47229 * 127.20091 * 359.96296 * 22 2 1 24 24 O 1.21543 * 119.99806 * 359.70933 * 23 22 2 25 25 O 1.34773 * 120.00212 * 179.97438 * 23 22 2 26 26 H 1.09002 * 109.47471 * 270.15286 * 1 2 3 27 27 H 1.09000 * 109.47188 * 30.15237 * 1 2 3 28 28 H 1.08995 * 109.47410 * 150.15591 * 1 2 3 29 29 H 1.09002 * 109.47205 * 29.95687 * 5 4 3 30 30 H 1.09004 * 109.47215 * 149.95243 * 5 4 3 31 31 H 1.09005 * 109.45918 * 294.17426 * 7 6 5 32 32 H 1.08999 * 109.46315 * 54.14261 * 7 6 5 33 33 H 1.08995 * 109.50106 * 179.11995 * 8 7 6 34 34 H 1.09000 * 109.50179 * 299.23769 * 8 7 6 35 35 H 1.08993 * 109.52281 * 62.24965 * 9 8 7 36 36 H 1.09003 * 109.51708 * 182.37588 * 9 8 7 37 37 H 0.96997 * 119.99735 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46077 * 305.85228 * 20 6 5 39 39 H 1.08993 * 109.46362 * 65.82285 * 20 6 5 40 40 H 1.08001 * 127.02320 * 179.97438 * 21 4 3 41 41 H 0.96698 * 116.99574 * 179.72028 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7389 -0.0070 5 6 4.7456 1.7011 -0.0144 6 7 5.1153 2.0119 -1.4017 7 6 4.0429 2.7521 -2.0789 8 6 4.5179 3.1841 -3.4681 9 6 4.8990 1.9433 -4.2805 10 6 5.9831 1.1647 -3.5300 11 1 6.8745 1.7843 -3.4324 12 6 6.3227 -0.0887 -4.2945 13 1 6.1864 -1.0560 -3.8339 14 6 6.8076 -0.0007 -5.5823 15 7 6.9732 1.1771 -6.1435 16 14 7.2279 -1.5544 -6.5303 17 1 6.9532 -2.7417 -5.6816 18 1 6.3996 -1.6228 -7.7609 19 1 8.6656 -1.5340 -6.9017 20 6 5.4655 0.7912 -2.1391 21 6 3.6855 -0.5991 -0.0056 22 6 2.3055 -1.1070 0.0030 23 6 1.8753 -2.5150 0.0075 24 8 0.6911 -2.7886 0.0143 25 8 2.7945 -3.5006 0.0095 26 1 -0.3634 0.0027 1.0277 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3634 -0.8913 -0.5114 29 1 4.4596 2.6188 0.4997 30 1 5.5962 1.2490 0.4958 31 1 3.1662 2.1119 -2.1777 32 1 3.7843 3.6341 -1.4930 33 1 3.7163 3.7198 -3.9765 34 1 5.3864 3.8354 -3.3695 35 1 4.0214 1.3106 -4.4124 36 1 5.2778 2.2488 -5.2558 37 1 7.3140 1.2390 -7.0495 38 1 6.2403 0.2491 -1.5968 39 1 4.5822 0.1604 -2.2375 40 1 4.5937 -1.1836 -0.0105 41 1 2.4639 -4.4092 0.0167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600844484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -106.331180 kcal Electronic energy + Delta-G solvation = -24196.070083 eV Core-core repulsion = 20655.158683 eV Total energy + Delta-G solvation = -3540.911400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.79089 -40.94493 -39.83050 -37.16027 -35.90401 -34.27871 -34.03293 -32.41065 -31.68472 -29.15419 -27.03332 -26.62368 -25.06401 -23.42623 -23.24699 -22.49963 -20.68063 -20.27021 -19.12660 -18.51502 -17.87745 -17.66262 -16.79221 -16.66806 -16.44083 -16.09754 -15.84784 -15.42739 -14.98772 -14.60411 -14.45698 -14.26303 -14.10326 -14.01544 -13.81623 -13.64853 -13.33770 -12.97861 -12.87757 -12.74421 -12.64490 -12.55526 -12.27590 -11.83158 -11.75175 -11.73418 -11.41912 -10.96070 -10.88598 -10.66850 -10.38449 -9.63783 -9.31434 -8.08309 -6.21495 0.02867 0.85656 1.38721 1.40974 1.51724 1.57450 1.93528 2.14022 2.42316 3.08264 3.19077 3.39603 3.64469 4.04496 4.11060 4.20190 4.21942 4.31279 4.43444 4.52837 4.55923 4.61291 4.63452 4.72412 4.77980 4.87599 4.90766 4.99130 5.07320 5.09972 5.17140 5.23243 5.38449 5.49840 5.50907 5.63786 5.86702 5.98699 6.09955 6.18718 6.21949 6.44243 6.90904 6.93413 7.46189 8.96539 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.005135 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.552974 B = 5451.075863 C = 6671.116957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 O -0.168 6.168 4 C -0.044 4.044 5 C 0.132 3.868 6 N -0.528 5.528 7 C 0.066 3.934 8 C -0.111 4.111 9 C -0.105 4.105 10 C 0.051 3.949 11 H 0.002 0.998 12 C -0.532 4.532 13 H 0.049 0.951 14 C 0.016 3.984 15 N -0.915 5.915 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.081 3.919 21 C -0.165 4.165 22 C -0.266 4.266 23 C 0.563 3.437 24 O -0.541 6.541 25 O -0.506 6.506 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.018 0.982 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.162 0.838 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 -0.899 14.756 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.038 3.962 3 O -0.064 6.064 4 C -0.093 4.093 5 C 0.004 3.996 6 N -0.250 5.250 7 C -0.061 4.061 8 C -0.149 4.149 9 C -0.143 4.143 10 C 0.033 3.967 11 H 0.020 0.980 12 C -0.571 4.571 13 H 0.067 0.933 14 C -0.183 4.183 15 N -0.554 5.554 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.047 4.047 21 C -0.185 4.185 22 C -0.269 4.269 23 C 0.410 3.590 24 O -0.434 6.434 25 O -0.320 6.320 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.037 0.963 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.180 0.820 41 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -10.173 0.118 14.595 17.791 hybrid contribution -0.339 -2.303 -1.056 2.556 sum -10.513 -2.184 13.538 17.279 Atomic orbital electron populations 1.20773 0.81501 1.05724 1.05826 1.23395 0.95241 0.82812 0.94775 1.83798 1.17127 1.34607 1.70821 1.23861 0.83020 0.96275 1.06180 1.21308 0.90025 0.97141 0.91161 1.62377 1.38622 1.22048 1.01904 1.22065 0.91130 0.97656 0.95269 1.21596 1.00513 0.97813 0.94982 1.21467 0.96892 0.95380 1.00550 1.18602 0.93458 0.94248 0.90423 0.97970 1.21522 1.42909 0.93271 0.99390 0.93299 1.25669 0.95482 0.98620 0.98528 1.70031 1.46488 1.24287 1.14608 0.85640 0.77892 0.80395 0.78551 1.19324 1.20816 1.20390 1.22029 0.97829 0.89621 0.95179 1.22812 0.96700 0.93850 1.05166 1.20330 0.94709 0.91120 1.20746 1.19606 0.82773 0.85522 0.71065 1.90838 1.18780 1.84849 1.48970 1.84576 1.41533 1.20718 1.85180 0.87049 0.88083 0.88424 0.86637 0.85773 0.96350 0.88743 0.91415 0.92390 0.96743 0.92330 0.93088 0.91826 0.96597 0.82046 0.70557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.88 71.23 0.70 -0.84 16 2 C 0.09 2.39 7.38 25.28 0.19 2.58 16 3 O -0.17 -4.55 10.09 4.61 0.05 -4.51 16 4 C -0.04 -1.20 4.93 24.75 0.12 -1.08 16 5 C 0.13 3.29 5.89 85.55 0.50 3.79 16 6 N -0.53 -17.62 4.86 -900.92 -4.38 -21.99 16 7 C 0.07 2.16 5.14 86.33 0.44 2.61 16 8 C -0.11 -4.22 6.09 30.65 0.19 -4.03 16 9 C -0.10 -5.06 5.02 30.67 0.15 -4.90 16 10 C 0.05 2.60 2.26 -11.49 -0.03 2.58 16 11 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 12 C -0.53 -29.65 8.57 25.60 0.22 -29.43 16 13 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 14 C 0.02 0.88 5.30 84.66 0.45 1.33 16 15 N -0.91 -53.23 11.35 21.45 0.24 -52.98 16 16 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.08 3.31 3.95 86.33 0.34 3.66 16 21 C -0.17 -4.81 9.51 23.65 0.23 -4.59 16 22 C -0.27 -7.72 6.32 -19.01 -0.12 -7.84 16 23 C 0.56 15.59 8.33 70.19 0.58 16.17 16 24 O -0.54 -15.96 15.64 19.70 0.31 -15.65 16 25 O -0.51 -11.50 13.34 -56.84 -0.76 -12.26 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.10 2.05 6.49 -2.39 -0.02 2.03 16 29 H 0.12 2.29 8.06 -2.39 -0.02 2.27 16 30 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.02 0.64 7.12 -2.38 -0.02 0.62 16 32 H 0.09 2.49 8.06 -2.39 -0.02 2.47 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 3.20 6.15 -2.39 -0.01 3.19 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 39 H 0.02 0.69 6.53 -2.39 -0.02 0.67 16 40 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.43 5.23 9.11 -74.06 -0.67 4.56 16 Total: -1.00 -68.54 335.48 1.84 -66.70 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.37 Total: 14.54 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.97 Total: -20.00 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -4.13 Total: -74.98 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.40 Total: -32.41 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.54 1.84 -66.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600844484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.628 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds