Wall clock time and date at job start Tue Mar 31 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33628 * 125.80627 * 2 1 4 4 C 1.34224 * 110.91724 * 179.81679 * 3 2 1 5 5 C 1.50703 * 125.42283 * 180.16331 * 4 3 2 6 6 N 1.46893 * 109.47391 * 270.33494 * 5 4 3 7 7 C 1.46852 * 111.00314 * 66.04661 * 6 5 4 8 8 C 1.53037 * 109.52441 * 185.84113 * 7 6 5 9 9 C 1.53121 * 109.27883 * 300.82112 * 8 7 6 10 10 C 1.53116 * 109.16122 * 57.65228 * 9 8 7 11 11 H 1.08997 * 109.50123 * 62.33004 * 10 9 8 12 12 C 1.50703 * 109.50254 * 182.40572 * 10 9 8 13 13 H 1.07996 * 119.99933 * 120.00049 * 12 10 9 14 14 C 1.37874 * 119.99667 * 300.00345 * 12 10 9 15 15 N 1.31513 * 120.00421 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99530 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47401 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47190 * 120.00053 * 16 14 12 19 19 H 1.48504 * 109.46932 * 239.99804 * 16 14 12 20 20 C 1.46851 * 111.00122 * 190.25531 * 6 5 4 21 21 C 1.34156 * 109.14818 * 0.45581 * 4 3 2 22 22 C 1.36494 * 125.80754 * 180.30940 * 2 1 3 23 23 C 1.47234 * 127.20226 * 359.97438 * 22 2 1 24 24 O 1.21535 * 119.99884 * 359.97438 * 23 22 2 25 25 O 1.34766 * 120.00263 * 179.97438 * 23 22 2 26 26 H 1.09002 * 109.47152 * 269.68929 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69030 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69011 * 1 2 3 29 29 H 1.09000 * 109.46998 * 30.33817 * 5 4 3 30 30 H 1.09004 * 109.46767 * 150.33051 * 5 4 3 31 31 H 1.09002 * 109.45893 * 305.85592 * 7 6 5 32 32 H 1.08997 * 109.45940 * 65.82135 * 7 6 5 33 33 H 1.09000 * 109.50226 * 60.76281 * 8 7 6 34 34 H 1.09000 * 109.50064 * 180.87775 * 8 7 6 35 35 H 1.08997 * 109.52204 * 177.56503 * 9 8 7 36 36 H 1.08999 * 109.51832 * 297.68898 * 9 8 7 37 37 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 38 38 H 1.08993 * 109.46151 * 294.17810 * 20 6 5 39 39 H 1.08997 * 109.45921 * 54.14798 * 20 6 5 40 40 H 1.08002 * 127.02380 * 179.77152 * 21 4 3 41 41 H 0.96699 * 117.00312 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7388 0.0040 5 6 4.7457 1.7012 0.0087 6 7 5.1220 2.0214 -1.3746 7 6 4.0528 2.7661 -2.0520 8 6 4.4159 2.9548 -3.5266 9 6 5.7389 3.7191 -3.6277 10 6 6.8245 2.9465 -2.8733 11 1 6.9684 1.9720 -3.3399 12 6 8.1164 3.7213 -2.9178 13 1 8.5841 4.0443 -1.9996 14 6 8.7009 4.0178 -4.1308 15 7 8.1315 3.6240 -5.2489 16 14 10.3026 4.9775 -4.1858 17 1 10.7343 5.3001 -2.8020 18 1 11.3472 4.1595 -4.8527 19 1 10.0993 6.2366 -4.9465 20 6 6.3916 2.7581 -1.4176 21 6 3.6856 -0.5990 -0.0033 22 6 2.3056 -1.1069 -0.0060 23 6 1.8754 -2.5150 -0.0131 24 8 0.6912 -2.7886 -0.0136 25 8 2.7946 -3.5005 -0.0190 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 4.4571 2.6153 0.5276 30 1 5.5938 1.2456 0.5199 31 1 3.1185 2.2097 -1.9763 32 1 3.9339 3.7412 -1.5796 33 1 4.5214 1.9801 -4.0030 34 1 3.6294 3.5211 -4.0255 35 1 6.0233 3.8179 -4.6753 36 1 5.6221 4.7091 -3.1870 37 1 8.5431 3.8323 -6.1023 38 1 6.2617 3.7332 -0.9482 39 1 7.1560 2.1959 -0.8813 40 1 4.5938 -1.1835 -0.0059 41 1 2.4640 -4.4092 -0.0231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600844485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:41 Heat of formation + Delta-G solvation = -85.609963 kcal Electronic energy + Delta-G solvation = -23491.223248 eV Core-core repulsion = 19951.210388 eV Total energy + Delta-G solvation = -3540.012860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.74428 -39.98376 -38.24795 -36.23703 -34.20852 -33.21855 -32.47683 -31.30571 -29.91933 -28.20259 -25.35978 -24.98816 -23.93876 -22.06465 -21.84067 -21.14087 -19.50775 -18.65914 -18.18190 -16.94393 -16.76600 -16.26261 -15.70037 -15.52618 -14.99854 -14.60019 -14.36461 -14.18955 -13.55000 -13.36989 -13.21519 -13.08723 -12.91838 -12.81537 -12.42431 -12.26245 -11.93258 -11.75279 -11.70007 -11.35513 -10.97996 -10.78180 -10.72446 -10.66325 -10.12675 -9.92148 -9.86659 -9.50975 -9.15465 -8.72905 -8.54759 -8.32793 -7.79827 -5.99113 -4.05656 1.01141 1.92410 2.52834 2.93855 3.01489 3.28984 3.37319 3.40466 4.28045 4.40273 4.56426 4.59985 5.03635 5.08254 5.24656 5.25579 5.31123 5.42004 5.49031 5.59148 5.70246 5.77172 5.87905 5.92689 6.04597 6.20875 6.28697 6.31633 6.32905 6.45763 6.68273 6.71388 6.89370 7.00179 7.18025 7.33319 7.55489 7.67105 7.75232 7.77033 8.05088 8.15156 8.44761 8.98509 9.58939 11.06822 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.003200 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.099552 B = 8748.292029 C = 9014.547469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.090 3.910 3 O -0.167 6.167 4 C 0.007 3.993 5 C 0.131 3.869 6 N -0.535 5.535 7 C 0.062 3.938 8 C -0.117 4.117 9 C -0.111 4.111 10 C 0.055 3.945 11 H 0.036 0.964 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.068 3.932 21 C -0.149 4.149 22 C -0.241 4.241 23 C 0.563 3.437 24 O -0.525 6.525 25 O -0.507 6.507 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.163 0.837 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -8.281 10.901 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 O -0.063 6.063 4 C -0.041 4.041 5 C 0.003 3.997 6 N -0.260 5.260 7 C -0.066 4.066 8 C -0.154 4.154 9 C -0.149 4.149 10 C 0.036 3.964 11 H 0.054 0.946 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.058 4.058 21 C -0.169 4.169 22 C -0.243 4.243 23 C 0.409 3.591 24 O -0.417 6.417 25 O -0.318 6.318 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.181 0.819 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.053 -8.064 10.457 18.568 hybrid contribution 0.652 0.493 0.288 0.867 sum -12.401 -7.571 10.745 18.071 Atomic orbital electron populations 1.20652 0.83751 1.05284 1.04438 1.22741 0.93929 0.83143 0.96514 1.83775 1.17249 1.34453 1.70867 1.22341 0.81624 0.95058 1.05110 1.20603 0.91221 0.95345 0.92543 1.62083 1.04610 1.47369 1.11909 1.22077 0.93229 0.95014 0.96232 1.21673 0.99186 1.01014 0.93575 1.21663 0.92133 0.96521 1.04582 1.18675 0.92992 0.96685 0.88039 0.94625 1.21165 1.06600 1.35212 0.92401 0.92720 1.24935 0.97314 0.95857 0.95741 1.69901 1.38982 1.46371 0.97352 0.86567 0.83809 0.79757 0.78023 1.19846 1.21035 1.21119 1.22360 0.87578 0.94064 1.01818 1.22555 0.96228 0.93141 1.04995 1.20048 0.94448 0.90176 1.19650 1.19646 0.82805 0.85247 0.71371 1.90856 1.18321 1.84539 1.48002 1.84611 1.41912 1.19513 1.85772 0.89169 0.87530 0.89900 0.93452 0.87601 0.92442 0.95605 0.92091 0.93467 0.89023 0.95100 0.93084 0.95879 0.91863 0.81935 0.72965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.89 36.01 0.36 -0.43 16 2 C 0.09 1.13 7.38 -34.94 -0.26 0.87 16 3 O -0.17 -2.31 9.71 7.69 0.07 -2.24 16 4 C 0.01 0.10 5.87 -35.74 -0.21 -0.11 16 5 C 0.13 1.87 5.48 -4.98 -0.03 1.84 16 6 N -0.53 -9.54 4.65 -236.11 -1.10 -10.64 16 7 C 0.06 1.11 5.31 -3.83 -0.02 1.09 16 8 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 9 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 10 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 11 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.02 11.35 55.43 0.63 -24.39 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 21 C -0.15 -2.03 10.93 -37.45 -0.41 -2.44 16 22 C -0.24 -3.20 6.32 -103.30 -0.65 -3.85 16 23 C 0.56 6.99 8.33 34.39 0.29 7.28 16 24 O -0.53 -7.13 15.64 -19.29 -0.30 -7.43 16 25 O -0.51 -5.00 13.34 -40.67 -0.54 -5.54 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.11 1.04 6.49 -51.93 -0.34 0.70 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.11 1.33 7.98 -51.93 -0.41 0.92 16 31 H 0.06 0.97 6.49 -51.93 -0.34 0.63 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 40 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.41 1.97 9.11 45.56 0.42 2.38 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.80 338.58 -8.18 -38.98 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.18 Total: 1.16 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.85 Total: -10.91 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.47 Total: -35.04 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.77 Total: -15.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.80 -8.18 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600844485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.633 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds