Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33628 * 125.80627 * 2 1 4 4 C 1.34224 * 110.91724 * 179.81679 * 3 2 1 5 5 C 1.50703 * 125.42283 * 180.16331 * 4 3 2 6 6 N 1.46893 * 109.47391 * 270.33494 * 5 4 3 7 7 C 1.46852 * 111.00314 * 66.04661 * 6 5 4 8 8 C 1.53037 * 109.52441 * 185.84113 * 7 6 5 9 9 C 1.53121 * 109.27883 * 300.82112 * 8 7 6 10 10 C 1.53116 * 109.16122 * 57.65228 * 9 8 7 11 11 H 1.08997 * 109.50123 * 62.33004 * 10 9 8 12 12 C 1.50703 * 109.50254 * 182.40572 * 10 9 8 13 13 H 1.07996 * 119.99933 * 120.00049 * 12 10 9 14 14 C 1.37874 * 119.99667 * 300.00345 * 12 10 9 15 15 N 1.31513 * 120.00421 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99530 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47401 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47190 * 120.00053 * 16 14 12 19 19 H 1.48504 * 109.46932 * 239.99804 * 16 14 12 20 20 C 1.46851 * 111.00122 * 190.25531 * 6 5 4 21 21 C 1.34156 * 109.14818 * 0.45581 * 4 3 2 22 22 C 1.36494 * 125.80754 * 180.30940 * 2 1 3 23 23 C 1.47234 * 127.20226 * 359.97438 * 22 2 1 24 24 O 1.21535 * 119.99884 * 359.97438 * 23 22 2 25 25 O 1.34766 * 120.00263 * 179.97438 * 23 22 2 26 26 H 1.09002 * 109.47152 * 269.68929 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69030 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69011 * 1 2 3 29 29 H 1.09000 * 109.46998 * 30.33817 * 5 4 3 30 30 H 1.09004 * 109.46767 * 150.33051 * 5 4 3 31 31 H 1.09002 * 109.45893 * 305.85592 * 7 6 5 32 32 H 1.08997 * 109.45940 * 65.82135 * 7 6 5 33 33 H 1.09000 * 109.50226 * 60.76281 * 8 7 6 34 34 H 1.09000 * 109.50064 * 180.87775 * 8 7 6 35 35 H 1.08997 * 109.52204 * 177.56503 * 9 8 7 36 36 H 1.08999 * 109.51832 * 297.68898 * 9 8 7 37 37 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 38 38 H 1.08993 * 109.46151 * 294.17810 * 20 6 5 39 39 H 1.08997 * 109.45921 * 54.14798 * 20 6 5 40 40 H 1.08002 * 127.02380 * 179.77152 * 21 4 3 41 41 H 0.96699 * 117.00312 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7388 0.0040 5 6 4.7457 1.7012 0.0087 6 7 5.1220 2.0214 -1.3746 7 6 4.0528 2.7661 -2.0520 8 6 4.4159 2.9548 -3.5266 9 6 5.7389 3.7191 -3.6277 10 6 6.8245 2.9465 -2.8733 11 1 6.9684 1.9720 -3.3399 12 6 8.1164 3.7213 -2.9178 13 1 8.5841 4.0443 -1.9996 14 6 8.7009 4.0178 -4.1308 15 7 8.1315 3.6240 -5.2489 16 14 10.3026 4.9775 -4.1858 17 1 10.7343 5.3001 -2.8020 18 1 11.3472 4.1595 -4.8527 19 1 10.0993 6.2366 -4.9465 20 6 6.3916 2.7581 -1.4176 21 6 3.6856 -0.5990 -0.0033 22 6 2.3056 -1.1069 -0.0060 23 6 1.8754 -2.5150 -0.0131 24 8 0.6912 -2.7886 -0.0136 25 8 2.7946 -3.5005 -0.0190 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 4.4571 2.6153 0.5276 30 1 5.5938 1.2456 0.5199 31 1 3.1185 2.2097 -1.9763 32 1 3.9339 3.7412 -1.5796 33 1 4.5214 1.9801 -4.0030 34 1 3.6294 3.5211 -4.0255 35 1 6.0233 3.8179 -4.6753 36 1 5.6221 4.7091 -3.1870 37 1 8.5431 3.8323 -6.1023 38 1 6.2617 3.7332 -0.9482 39 1 7.1560 2.1959 -0.8813 40 1 4.5938 -1.1835 -0.0059 41 1 2.4640 -4.4092 -0.0231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600844485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = -105.204537 kcal Electronic energy + Delta-G solvation = -23492.072933 eV Core-core repulsion = 19951.210388 eV Total energy + Delta-G solvation = -3540.862545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.73992 -40.88726 -39.78705 -37.10176 -35.86497 -34.22366 -34.00894 -32.56352 -31.67816 -29.30720 -26.92058 -26.47536 -24.98699 -23.53260 -23.20664 -22.46838 -20.48154 -20.36451 -19.10053 -18.48397 -17.83127 -17.69733 -16.74829 -16.62096 -16.45681 -16.07955 -15.82342 -15.37608 -14.97956 -14.64708 -14.42809 -14.21574 -14.11819 -13.96243 -13.81204 -13.51659 -13.44223 -12.97790 -12.85681 -12.60158 -12.57672 -12.52197 -12.45692 -11.84296 -11.72908 -11.70856 -11.39110 -11.01680 -10.84095 -10.65211 -10.37030 -9.58723 -9.19281 -8.05887 -6.19843 0.07060 0.88092 1.42369 1.44593 1.55325 1.58368 1.98610 2.17882 2.45008 3.12492 3.21736 3.37972 3.66969 4.08578 4.12933 4.17187 4.23734 4.31243 4.40122 4.51589 4.59420 4.60039 4.61501 4.71143 4.73129 4.88316 4.93775 4.97543 5.06844 5.13658 5.17632 5.27908 5.37532 5.51913 5.56079 5.66014 5.93430 5.99350 6.11539 6.20813 6.22471 6.45411 6.93465 6.99586 7.48355 8.98933 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.003200 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.099552 B = 8748.292029 C = 9014.547469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.095 3.905 3 O -0.174 6.174 4 C -0.008 4.008 5 C 0.134 3.866 6 N -0.546 5.546 7 C 0.070 3.930 8 C -0.110 4.110 9 C -0.104 4.104 10 C 0.051 3.949 11 H -0.003 1.003 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.082 3.918 21 C -0.150 4.150 22 C -0.264 4.264 23 C 0.566 3.434 24 O -0.542 6.542 25 O -0.505 6.505 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.259 0.741 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 -8.287 12.353 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 O -0.071 6.071 4 C -0.056 4.056 5 C 0.007 3.993 6 N -0.271 5.271 7 C -0.058 4.058 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.033 3.967 11 H 0.015 0.985 12 C -0.571 4.571 13 H 0.074 0.926 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.045 4.045 21 C -0.169 4.169 22 C -0.266 4.266 23 C 0.413 3.587 24 O -0.435 6.435 25 O -0.319 6.319 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.187 0.813 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -13.769 -8.097 11.927 19.935 hybrid contribution 0.842 0.409 -0.165 0.950 sum -12.927 -7.688 11.762 19.093 Atomic orbital electron populations 1.20791 0.81524 1.05853 1.05757 1.23364 0.95120 0.82639 0.94750 1.83765 1.17210 1.34986 1.71104 1.22231 0.81806 0.95042 1.06481 1.20632 0.92153 0.96132 0.90365 1.61963 1.03764 1.46817 1.14590 1.21984 0.93634 0.95646 0.94534 1.21573 0.97721 0.99859 0.95618 1.21465 0.93923 0.96669 1.02123 1.18602 0.92916 0.94404 0.90826 0.98466 1.21554 1.07731 1.35288 0.92502 0.92587 1.25725 1.00513 0.96872 0.95495 1.70050 1.40352 1.47451 0.97773 0.85569 0.79878 0.78274 0.78283 1.18902 1.20853 1.20883 1.22020 0.89122 0.94656 0.98663 1.22734 0.96787 0.93231 1.04195 1.20294 0.94531 0.91084 1.20696 1.19538 0.82731 0.85417 0.71054 1.90847 1.18889 1.84819 1.48947 1.84564 1.41460 1.20724 1.85169 0.87323 0.88029 0.88155 0.92245 0.85906 0.90999 0.94963 0.93507 0.91466 0.92450 0.95582 0.93180 0.95707 0.91199 0.81302 0.70480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.89 71.24 0.70 -0.64 16 2 C 0.09 2.20 7.38 25.28 0.19 2.38 16 3 O -0.17 -4.45 9.71 4.61 0.04 -4.41 16 4 C -0.01 -0.20 5.87 24.76 0.15 -0.06 16 5 C 0.13 3.56 5.48 85.56 0.47 4.03 16 6 N -0.55 -18.81 4.65 -900.93 -4.19 -22.99 16 7 C 0.07 2.37 5.31 86.32 0.46 2.82 16 8 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 9 C -0.10 -4.93 5.02 30.67 0.15 -4.77 16 10 C 0.05 2.56 2.26 -11.49 -0.03 2.53 16 11 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 12 C -0.53 -28.84 8.56 25.60 0.22 -28.62 16 13 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.01 0.69 5.30 84.65 0.45 1.14 16 15 N -0.92 -53.06 11.35 21.45 0.24 -52.82 16 16 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.08 3.27 4.68 86.33 0.40 3.67 16 21 C -0.15 -3.84 10.93 23.65 0.26 -3.58 16 22 C -0.26 -6.61 6.32 -19.01 -0.12 -6.73 16 23 C 0.57 13.23 8.33 70.19 0.58 13.82 16 24 O -0.54 -13.94 15.64 19.72 0.31 -13.63 16 25 O -0.51 -9.11 13.34 -56.77 -0.76 -9.87 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.80 6.49 -2.39 -0.02 1.78 16 28 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 30 H 0.12 2.80 7.98 -2.38 -0.02 2.79 16 31 H 0.07 2.26 6.49 -2.39 -0.02 2.24 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 3.12 6.15 -2.39 -0.01 3.10 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 2.65 8.01 -2.39 -0.02 2.63 16 40 H 0.17 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.43 3.31 9.11 -74.06 -0.67 2.63 16 Total: -1.00 -66.56 338.58 2.12 -64.44 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.37 Total: 12.15 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 4.07 Total: -18.11 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -3.94 Total: -75.81 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.40 Total: -27.91 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.56 2.12 -64.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600844485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.767 kcal (2) G-P(sol) polarization free energy of solvation -66.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds