Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33626 * 125.81168 * 2 1 4 4 C 1.34217 * 110.92835 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.42789 * 179.73321 * 4 3 2 6 6 N 1.46893 * 109.47053 * 270.02535 * 5 4 3 7 7 C 1.46847 * 111.00494 * 45.79243 * 6 5 4 8 8 C 1.53036 * 109.52539 * 185.83924 * 7 6 5 9 9 C 1.53116 * 109.27677 * 300.82117 * 8 7 6 10 10 C 1.50698 * 109.57436 * 177.59368 * 9 8 7 11 11 H 1.07998 * 119.99720 * 245.71157 * 10 9 8 12 12 C 1.37879 * 120.00446 * 65.71138 * 10 9 8 13 13 N 1.31521 * 119.99423 * 9.55551 * 12 10 9 14 14 Si 1.86791 * 120.00223 * 189.55600 * 12 10 9 15 15 H 1.48500 * 109.47238 * 94.98821 * 14 12 10 16 16 H 1.48507 * 109.46944 * 214.98999 * 14 12 10 17 17 H 1.48501 * 109.47487 * 334.98828 * 14 12 10 18 18 C 1.53115 * 109.16600 * 57.65051 * 9 8 7 19 19 C 1.46853 * 110.99765 * 170.00278 * 6 5 4 20 20 C 1.34157 * 109.14106 * 0.02562 * 4 3 2 21 21 C 1.36495 * 125.80932 * 179.97438 * 2 1 3 22 22 C 1.47233 * 127.20009 * 0.02562 * 21 2 1 23 23 O 1.21537 * 119.99691 * 0.02562 * 22 21 2 24 24 O 1.34771 * 120.00080 * 179.97438 * 22 21 2 25 25 H 1.09005 * 109.47288 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47775 * 120.02044 * 1 2 3 27 27 H 1.09002 * 109.46940 * 240.02741 * 1 2 3 28 28 H 1.08998 * 109.47039 * 30.02598 * 5 4 3 29 29 H 1.09007 * 109.46803 * 150.02078 * 5 4 3 30 30 H 1.09000 * 109.45487 * 305.85524 * 7 6 5 31 31 H 1.08995 * 109.46276 * 65.81962 * 7 6 5 32 32 H 1.09003 * 109.50160 * 180.87704 * 8 7 6 33 33 H 1.08996 * 109.53499 * 60.77891 * 8 7 6 34 34 H 1.09004 * 109.52114 * 297.75039 * 9 8 7 35 35 H 0.97001 * 119.99017 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.50919 * 182.40379 * 18 9 8 37 37 H 1.09007 * 109.52979 * 62.30956 * 18 9 8 38 38 H 1.09002 * 109.46038 * 294.17266 * 19 6 5 39 39 H 1.08997 * 109.46005 * 54.15237 * 19 6 5 40 40 H 1.08002 * 127.01783 * 179.97438 * 20 4 3 41 41 H 0.96698 * 116.99847 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0836 0.0000 4 6 3.5860 0.7389 0.0006 5 6 4.7457 1.7013 -0.0050 6 7 5.1209 2.0079 -1.3917 7 6 3.9340 2.2970 -2.2065 8 6 4.3475 2.4678 -3.6700 9 6 5.3565 3.6142 -3.7798 10 6 5.8130 3.7499 -5.2095 11 1 6.8412 3.5458 -5.4697 12 6 4.9183 4.1345 -6.1855 13 7 3.7215 4.5633 -5.8482 14 14 5.4056 4.0465 -7.9865 15 1 4.9384 2.7604 -8.5635 16 1 4.7827 5.1752 -8.7236 17 1 6.8834 4.1339 -8.1044 18 6 6.5611 3.3111 -2.8845 19 6 6.0834 3.1158 -1.4437 20 6 3.6856 -0.5990 0.0004 21 6 2.3056 -1.1069 0.0005 22 6 1.8753 -2.5150 0.0006 23 8 0.6911 -2.7885 -0.0002 24 8 2.7946 -3.5005 0.0006 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5141 -0.8897 27 1 -0.3633 -0.5134 0.8903 28 1 4.4575 2.6205 0.5051 29 1 5.5942 1.2507 0.5100 30 1 3.2265 1.4721 -2.1229 31 1 3.4650 3.2148 -1.8522 32 1 3.4684 2.6977 -4.2721 33 1 4.8039 1.5457 -4.0298 34 1 4.8879 4.5440 -3.4572 35 1 3.0922 4.8342 -6.5348 36 1 7.2636 4.1435 -2.9253 37 1 7.0532 2.4022 -3.2311 38 1 5.6043 4.0299 -1.0930 39 1 6.9371 2.8854 -0.8063 40 1 4.5938 -1.1834 0.0003 41 1 2.4640 -4.4092 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600845141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = -85.148784 kcal Electronic energy + Delta-G solvation = -23658.099136 eV Core-core repulsion = 20118.106274 eV Total energy + Delta-G solvation = -3539.992862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.78415 -39.95910 -38.29325 -36.20619 -34.33426 -33.21465 -32.40694 -31.07007 -29.90349 -28.34347 -26.00827 -24.61891 -23.61244 -22.26838 -21.80806 -21.19531 -19.47885 -18.63795 -18.16245 -16.92584 -16.80181 -16.29169 -15.68259 -15.55519 -15.01610 -14.62392 -14.43265 -14.23606 -13.58988 -13.28200 -13.12388 -13.02934 -12.96577 -12.77986 -12.38495 -12.23649 -11.96563 -11.71016 -11.63748 -11.39946 -11.04808 -10.80308 -10.79248 -10.46226 -10.26340 -10.09644 -9.91404 -9.46411 -8.93863 -8.76859 -8.59197 -8.28922 -7.87242 -5.99783 -4.00567 1.03507 1.89215 2.52983 2.94261 3.02501 3.32365 3.39727 3.42641 4.27653 4.41979 4.46983 4.60645 5.01437 5.08631 5.24639 5.32690 5.32738 5.35627 5.49267 5.59659 5.63316 5.80110 5.84272 5.93911 6.03169 6.14298 6.24775 6.26089 6.31735 6.52350 6.59289 6.79032 6.97814 7.01821 7.07550 7.32076 7.50988 7.55737 7.78779 7.78903 8.00381 8.04877 8.47757 9.03355 9.62680 11.09485 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003721 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.503122 B = 7523.586296 C = 8038.532331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.096 3.904 3 O -0.165 6.165 4 C 0.001 3.999 5 C 0.131 3.869 6 N -0.531 5.531 7 C 0.058 3.942 8 C -0.098 4.098 9 C 0.046 3.954 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.106 4.106 19 C 0.060 3.940 20 C -0.148 4.148 21 C -0.243 4.243 22 C 0.562 3.438 23 O -0.523 6.523 24 O -0.508 6.508 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.062 0.938 40 H 0.163 0.837 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -10.387 14.950 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.042 3.958 3 O -0.061 6.061 4 C -0.047 4.047 5 C 0.003 3.997 6 N -0.257 5.257 7 C -0.069 4.069 8 C -0.137 4.137 9 C 0.027 3.973 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.714 3.286 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.143 4.143 19 C -0.068 4.068 20 C -0.168 4.168 21 C -0.245 4.245 22 C 0.408 3.592 23 O -0.415 6.415 24 O -0.320 6.320 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.039 -10.073 14.669 18.052 hybrid contribution -0.361 -0.165 -0.749 0.848 sum -3.400 -10.238 13.920 17.611 Atomic orbital electron populations 1.20549 0.83617 1.04280 1.05030 1.22773 0.94018 0.83075 0.95928 1.83816 1.17103 1.34426 1.70786 1.22154 0.81897 0.94982 1.05682 1.20696 0.90934 0.95357 0.92672 1.62277 1.14816 1.41755 1.06817 1.22296 0.90182 0.98024 0.96445 1.21599 1.01535 0.99678 0.90848 1.18704 0.90677 0.93962 0.93948 1.21172 0.95924 1.45594 0.92421 0.92678 1.24963 0.95249 0.94785 0.98812 1.69974 1.06670 1.43232 1.32971 0.86680 0.78682 0.77595 0.85656 1.20740 1.21400 1.19898 1.21675 0.99905 1.00446 0.92307 1.22176 0.94294 0.90562 0.99728 1.22535 0.96289 0.93019 1.04981 1.20034 0.94359 0.90217 1.19903 1.19629 0.82840 0.85194 0.71539 1.90883 1.18289 1.84580 1.47707 1.84600 1.41962 1.19503 1.85891 0.89944 0.88367 0.88611 0.93339 0.87795 0.92678 0.95565 0.90729 0.93524 0.95364 0.93125 0.92804 0.92400 0.95342 0.91990 0.81947 0.72998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.14 36.00 0.33 -0.46 16 2 C 0.10 1.26 7.38 -34.94 -0.26 1.01 16 3 O -0.17 -2.40 9.73 7.71 0.08 -2.33 16 4 C 0.00 0.01 4.97 -35.74 -0.18 -0.17 16 5 C 0.13 1.77 5.80 -4.98 -0.03 1.74 16 6 N -0.53 -9.05 4.80 -236.11 -1.13 -10.19 16 7 C 0.06 1.13 4.98 -3.83 -0.02 1.12 16 8 C -0.10 -2.31 5.19 -26.65 -0.14 -2.44 16 9 C 0.05 1.12 2.03 -91.65 -0.19 0.94 16 10 C -0.51 -14.05 8.48 -34.44 -0.29 -14.34 16 11 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 12 C 0.06 1.76 5.23 -17.82 -0.09 1.66 16 13 N -0.89 -25.62 12.20 55.43 0.68 -24.95 16 14 Si 0.89 21.36 29.55 -169.99 -5.02 16.33 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.11 -2.15 5.32 -26.65 -0.14 -2.29 16 19 C 0.06 1.01 5.42 -3.83 -0.02 0.99 16 20 C -0.15 -1.99 10.93 -37.45 -0.41 -2.40 16 21 C -0.24 -3.29 6.32 -103.30 -0.65 -3.95 16 22 C 0.56 7.15 8.33 34.39 0.29 7.43 16 23 O -0.52 -7.36 16.45 -19.29 -0.32 -7.68 16 24 O -0.51 -5.05 13.34 -40.68 -0.54 -5.59 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 1.07 6.02 -51.93 -0.31 0.75 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.95 7.00 -51.93 -0.36 1.58 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.41 2.02 9.11 45.56 0.42 2.44 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -31.72 340.62 -8.22 -39.94 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.29 Total: 0.50 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.80 Total: -11.17 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.46 Total: -35.13 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.79 Total: -15.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.72 -8.22 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600845141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds