Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33626 * 125.81168 * 2 1 4 4 C 1.34217 * 110.92835 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.42789 * 179.73321 * 4 3 2 6 6 N 1.46893 * 109.47053 * 270.02535 * 5 4 3 7 7 C 1.46847 * 111.00494 * 45.79243 * 6 5 4 8 8 C 1.53036 * 109.52539 * 185.83924 * 7 6 5 9 9 C 1.53116 * 109.27677 * 300.82117 * 8 7 6 10 10 C 1.50698 * 109.57436 * 177.59368 * 9 8 7 11 11 H 1.07998 * 119.99720 * 245.71157 * 10 9 8 12 12 C 1.37879 * 120.00446 * 65.71138 * 10 9 8 13 13 N 1.31521 * 119.99423 * 9.55551 * 12 10 9 14 14 Si 1.86791 * 120.00223 * 189.55600 * 12 10 9 15 15 H 1.48500 * 109.47238 * 94.98821 * 14 12 10 16 16 H 1.48507 * 109.46944 * 214.98999 * 14 12 10 17 17 H 1.48501 * 109.47487 * 334.98828 * 14 12 10 18 18 C 1.53115 * 109.16600 * 57.65051 * 9 8 7 19 19 C 1.46853 * 110.99765 * 170.00278 * 6 5 4 20 20 C 1.34157 * 109.14106 * 0.02562 * 4 3 2 21 21 C 1.36495 * 125.80932 * 179.97438 * 2 1 3 22 22 C 1.47233 * 127.20009 * 0.02562 * 21 2 1 23 23 O 1.21537 * 119.99691 * 0.02562 * 22 21 2 24 24 O 1.34771 * 120.00080 * 179.97438 * 22 21 2 25 25 H 1.09005 * 109.47288 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47775 * 120.02044 * 1 2 3 27 27 H 1.09002 * 109.46940 * 240.02741 * 1 2 3 28 28 H 1.08998 * 109.47039 * 30.02598 * 5 4 3 29 29 H 1.09007 * 109.46803 * 150.02078 * 5 4 3 30 30 H 1.09000 * 109.45487 * 305.85524 * 7 6 5 31 31 H 1.08995 * 109.46276 * 65.81962 * 7 6 5 32 32 H 1.09003 * 109.50160 * 180.87704 * 8 7 6 33 33 H 1.08996 * 109.53499 * 60.77891 * 8 7 6 34 34 H 1.09004 * 109.52114 * 297.75039 * 9 8 7 35 35 H 0.97001 * 119.99017 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.50919 * 182.40379 * 18 9 8 37 37 H 1.09007 * 109.52979 * 62.30956 * 18 9 8 38 38 H 1.09002 * 109.46038 * 294.17266 * 19 6 5 39 39 H 1.08997 * 109.46005 * 54.15237 * 19 6 5 40 40 H 1.08002 * 127.01783 * 179.97438 * 20 4 3 41 41 H 0.96698 * 116.99847 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0836 0.0000 4 6 3.5860 0.7389 0.0006 5 6 4.7457 1.7013 -0.0050 6 7 5.1209 2.0079 -1.3917 7 6 3.9340 2.2970 -2.2065 8 6 4.3475 2.4678 -3.6700 9 6 5.3565 3.6142 -3.7798 10 6 5.8130 3.7499 -5.2095 11 1 6.8412 3.5458 -5.4697 12 6 4.9183 4.1345 -6.1855 13 7 3.7215 4.5633 -5.8482 14 14 5.4056 4.0465 -7.9865 15 1 4.9384 2.7604 -8.5635 16 1 4.7827 5.1752 -8.7236 17 1 6.8834 4.1339 -8.1044 18 6 6.5611 3.3111 -2.8845 19 6 6.0834 3.1158 -1.4437 20 6 3.6856 -0.5990 0.0004 21 6 2.3056 -1.1069 0.0005 22 6 1.8753 -2.5150 0.0006 23 8 0.6911 -2.7885 -0.0002 24 8 2.7946 -3.5005 0.0006 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5141 -0.8897 27 1 -0.3633 -0.5134 0.8903 28 1 4.4575 2.6205 0.5051 29 1 5.5942 1.2507 0.5100 30 1 3.2265 1.4721 -2.1229 31 1 3.4650 3.2148 -1.8522 32 1 3.4684 2.6977 -4.2721 33 1 4.8039 1.5457 -4.0298 34 1 4.8879 4.5440 -3.4572 35 1 3.0922 4.8342 -6.5348 36 1 7.2636 4.1435 -2.9253 37 1 7.0532 2.4022 -3.2311 38 1 5.6043 4.0299 -1.0930 39 1 6.9371 2.8854 -0.8063 40 1 4.5938 -1.1834 0.0003 41 1 2.4640 -4.4092 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600845141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = -105.936791 kcal Electronic energy + Delta-G solvation = -23659.000571 eV Core-core repulsion = 20118.106274 eV Total energy + Delta-G solvation = -3540.894298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.80327 -40.88881 -39.79947 -37.09186 -36.00520 -34.22643 -33.93393 -32.50017 -31.53326 -29.57426 -27.53522 -25.91719 -24.84139 -23.80929 -23.15477 -22.49783 -20.46713 -20.36002 -19.09179 -18.47861 -17.89416 -17.82443 -16.79169 -16.64176 -16.43024 -16.08772 -15.88887 -15.42431 -14.84307 -14.75429 -14.29878 -14.27047 -14.21578 -13.92660 -13.87048 -13.46375 -13.28714 -13.03729 -12.93865 -12.72306 -12.60506 -12.58560 -12.22784 -12.08978 -11.91388 -11.76710 -11.36752 -10.94795 -10.74367 -10.69091 -10.41561 -9.65226 -9.20768 -8.12490 -6.20313 0.05218 0.86098 1.39838 1.41887 1.51469 1.57875 1.97245 2.16834 2.43815 3.06553 3.18015 3.32966 3.65743 4.05900 4.12982 4.19214 4.22279 4.33110 4.40182 4.45962 4.55248 4.55835 4.61221 4.71855 4.76643 4.82804 4.90499 4.98711 5.05779 5.09516 5.22046 5.28028 5.31396 5.48404 5.53822 5.62946 5.91963 5.95676 5.99639 6.15337 6.22837 6.39964 6.92365 6.98980 7.46501 8.96097 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003721 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.503122 B = 7523.586296 C = 8038.532331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.091 3.909 3 O -0.180 6.180 4 C -0.018 4.018 5 C 0.133 3.867 6 N -0.536 5.536 7 C 0.076 3.924 8 C -0.089 4.089 9 C 0.042 3.958 10 C -0.532 4.532 11 H 0.053 0.947 12 C 0.014 3.986 13 N -0.920 5.920 14 Si 0.948 3.052 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.265 1.265 18 C -0.100 4.100 19 C 0.065 3.935 20 C -0.144 4.144 21 C -0.262 4.262 22 C 0.565 3.435 23 O -0.542 6.542 24 O -0.504 6.504 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.038 0.962 33 H 0.036 0.964 34 H -0.007 1.007 35 H 0.259 0.741 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.026 0.974 39 H 0.103 0.897 40 H 0.178 0.822 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -11.515 16.029 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 O -0.077 6.077 4 C -0.066 4.066 5 C 0.007 3.993 6 N -0.261 5.261 7 C -0.052 4.052 8 C -0.127 4.127 9 C 0.023 3.977 10 C -0.570 4.570 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.560 5.560 14 Si 0.774 3.226 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.138 4.138 19 C -0.062 4.062 20 C -0.163 4.163 21 C -0.265 4.265 22 C 0.412 3.588 23 O -0.436 6.436 24 O -0.317 6.317 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.011 0.989 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.122 0.878 40 H 0.196 0.804 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -1.938 -11.228 15.762 19.449 hybrid contribution -0.694 0.139 -1.064 1.278 sum -2.632 -11.089 14.698 18.599 Atomic orbital electron populations 1.20666 0.81888 1.05343 1.05460 1.23336 0.95123 0.82831 0.94993 1.83807 1.17583 1.35175 1.71111 1.22330 0.81958 0.95432 1.06872 1.20852 0.92099 0.95988 0.90360 1.62208 1.13455 1.41465 1.08991 1.21935 0.91352 0.97520 0.94389 1.21363 0.99619 0.98546 0.93211 1.18674 0.92535 0.92706 0.93739 1.21585 0.95922 1.45348 0.94188 0.92854 1.25731 0.95259 0.94529 1.02954 1.70099 1.07659 1.44087 1.34149 0.85693 0.78715 0.77555 0.80631 1.20395 1.21074 1.18976 1.21541 0.97947 1.00370 0.93892 1.22130 0.95576 0.90695 0.97778 1.22774 0.96768 0.92941 1.03846 1.20307 0.94726 0.90974 1.20488 1.19517 0.82753 0.85390 0.71151 1.90873 1.19032 1.84896 1.48755 1.84548 1.41308 1.20659 1.85209 0.88601 0.88469 0.87425 0.92477 0.84344 0.92413 0.96837 0.94359 0.94492 0.98891 0.93176 0.92405 0.92631 0.95571 0.87845 0.80425 0.70476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.14 71.23 0.65 -0.85 16 2 C 0.09 2.32 7.38 25.28 0.19 2.50 16 3 O -0.18 -5.08 9.73 4.68 0.05 -5.03 16 4 C -0.02 -0.48 4.97 24.76 0.12 -0.36 16 5 C 0.13 3.23 5.80 85.56 0.50 3.72 16 6 N -0.54 -17.22 4.80 -900.93 -4.32 -21.54 16 7 C 0.08 2.99 4.98 86.33 0.43 3.42 16 8 C -0.09 -4.29 5.19 30.64 0.16 -4.13 16 9 C 0.04 2.12 2.03 -11.46 -0.02 2.10 16 10 C -0.53 -29.71 8.48 25.60 0.22 -29.49 16 11 H 0.05 2.92 7.77 -2.91 -0.02 2.90 16 12 C 0.01 0.78 5.23 84.65 0.44 1.22 16 13 N -0.92 -54.59 12.20 21.45 0.26 -54.33 16 14 Si 0.95 44.27 29.55 68.60 2.03 46.29 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C -0.10 -3.98 5.32 30.64 0.16 -3.82 16 19 C 0.07 2.05 5.42 86.32 0.47 2.52 16 20 C -0.14 -3.57 10.93 23.65 0.26 -3.31 16 21 C -0.26 -6.80 6.32 -19.01 -0.12 -6.92 16 22 C 0.57 13.58 8.33 70.19 0.58 14.16 16 23 O -0.54 -14.66 16.45 19.72 0.32 -14.34 16 24 O -0.50 -8.94 13.34 -56.82 -0.76 -9.70 16 25 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.11 1.81 8.08 -2.39 -0.02 1.79 16 28 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 29 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.06 2.24 6.02 -2.39 -0.01 2.22 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 2.09 7.00 -2.39 -0.02 2.07 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H -0.01 -0.40 8.09 -2.38 -0.02 -0.42 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 2.48 8.12 -2.39 -0.02 2.46 16 40 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.43 3.26 9.11 -74.06 -0.67 2.59 16 Total: -1.00 -69.62 340.62 1.98 -67.64 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.37 Total: 10.22 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.04 Total: -19.22 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -4.06 Total: -75.87 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.39 Total: -29.07 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.62 1.98 -67.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600845141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.295 kcal (2) G-P(sol) polarization free energy of solvation -69.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds