Wall clock time and date at job start Tue Mar 31 2020 07:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47105 * 2 1 4 4 C 1.53000 * 109.47166 * 119.99932 * 2 1 3 5 5 C 1.53003 * 109.46843 * 300.00054 * 4 2 1 6 6 N 1.46500 * 109.46921 * 179.97438 * 5 4 2 7 7 C 1.39782 * 120.00087 * 180.02562 * 6 5 4 8 8 C 1.38956 * 120.00487 * 359.72338 * 7 6 5 9 9 C 1.38013 * 119.99008 * 179.72309 * 8 7 6 10 10 C 1.38899 * 120.00511 * 0.55423 * 9 8 7 11 11 O 1.35798 * 119.98862 * 179.69977 * 10 9 8 12 12 C 1.34818 * 116.99804 * 174.48089 * 11 10 9 13 13 H 1.07997 * 119.99862 * 5.05034 * 12 11 10 14 14 C 1.38618 * 119.99980 * 185.06170 * 12 11 10 15 15 N 1.31590 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46828 * 59.99313 * 16 14 12 18 18 H 1.48495 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46610 * 299.99633 * 16 14 12 20 20 C 1.38893 * 120.01764 * 359.72264 * 10 9 8 21 21 C 1.38018 * 120.00244 * 359.97438 * 20 10 9 22 22 C 1.50704 * 109.47176 * 239.99728 * 2 1 3 23 23 O 1.20827 * 119.99992 * 240.00251 * 22 2 1 24 24 O 1.34227 * 119.99609 * 59.99838 * 22 2 1 25 25 H 1.08995 * 109.47125 * 300.00085 * 1 2 3 26 26 H 1.08997 * 109.47218 * 60.00459 * 1 2 3 27 27 H 1.09002 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47376 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47429 * 299.99660 * 3 2 1 30 30 H 1.09003 * 109.47497 * 59.99962 * 3 2 1 31 31 H 1.08999 * 109.47250 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46943 * 59.99526 * 4 2 1 33 33 H 1.08999 * 109.47273 * 59.99922 * 5 4 2 34 34 H 1.08997 * 109.47271 * 299.99805 * 5 4 2 35 35 H 0.97006 * 120.00257 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00178 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.99091 * 180.25449 * 9 8 7 38 38 H 0.96997 * 119.99578 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.00388 * 179.97438 * 20 10 9 40 40 H 1.07998 * 119.99940 * 179.97438 * 21 20 10 41 41 H 0.96699 * 116.99753 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 0.0001 2.4985 6 7 2.0178 -0.6908 3.6946 7 6 1.6796 -0.2137 4.9642 8 6 0.8854 0.9194 5.0918 9 6 0.5469 1.3870 6.3454 10 6 1.0095 0.7318 7.4794 11 8 0.6813 1.1957 8.7128 12 6 1.0656 0.4512 9.7690 13 1 1.6786 -0.4250 9.6176 14 6 0.6737 0.8100 11.0493 15 7 -0.0731 1.8777 11.2337 16 14 1.2055 -0.2220 12.5127 17 1 2.6885 -0.2498 12.5858 18 1 0.6598 0.3700 13.7604 19 1 0.6916 -1.6062 12.3550 20 6 1.8081 -0.3975 7.3522 21 6 2.1418 -0.8692 6.0988 22 6 2.0324 -0.7105 -1.2305 23 8 2.7270 -1.6929 -1.1195 24 8 1.7080 -0.2519 -2.4495 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2493 33 1 0.4400 0.0001 2.4984 34 1 1.8933 1.0277 2.4985 35 1 2.5749 -1.4800 3.6057 36 1 0.5290 1.4312 4.2101 37 1 -0.0738 2.2652 6.4446 38 1 -0.3470 2.1290 12.1296 39 1 2.1680 -0.9065 8.2341 40 1 2.7631 -1.7470 6.0000 41 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603613483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:15 Heat of formation + Delta-G solvation = -100.427120 kcal Electronic energy + Delta-G solvation = -22550.719663 eV Core-core repulsion = 19010.064282 eV Total energy + Delta-G solvation = -3540.655380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98322 -39.04295 -37.76880 -36.66702 -36.32264 -34.01534 -32.05225 -30.24828 -29.42643 -27.82162 -26.68992 -25.47419 -24.86185 -23.17921 -21.73579 -20.64885 -19.60322 -18.25017 -17.78716 -17.22652 -16.72563 -16.16956 -16.14996 -15.24596 -15.24353 -14.46182 -14.24998 -14.06889 -13.72391 -13.67053 -13.38181 -13.36591 -12.78479 -12.63283 -12.44905 -12.40099 -12.02612 -11.92001 -11.70975 -11.54770 -11.52259 -11.40276 -11.12641 -11.08950 -10.81340 -10.65816 -10.56822 -10.34570 -9.22016 -9.14412 -8.42283 -8.15230 -6.38586 -6.30592 -3.87938 1.83044 2.22030 2.58438 2.59223 3.20050 3.21186 3.23665 3.74859 4.07560 4.33630 4.34693 4.43253 4.69874 4.91363 4.94598 5.02433 5.21651 5.27123 5.31176 5.39633 5.40215 5.44459 5.57802 5.67794 5.68024 5.72182 5.78751 5.95884 5.96901 6.10458 6.23454 6.25896 6.56175 6.87954 6.92367 7.15039 7.33658 7.46792 7.50532 7.65892 7.99522 8.13743 8.25173 9.15225 9.89740 10.88014 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.002397 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.850918 B =11679.077376 C =12066.506492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.147 4.147 4 C -0.113 4.113 5 C 0.133 3.867 6 N -0.761 5.761 7 C 0.124 3.876 8 C -0.146 4.146 9 C -0.151 4.151 10 C 0.113 3.887 11 O -0.188 6.188 12 C -0.387 4.387 13 H 0.087 0.913 14 C 0.036 3.964 15 N -0.870 5.870 16 Si 0.938 3.062 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.272 1.272 20 C -0.190 4.190 21 C -0.142 4.142 22 C 0.488 3.512 23 O -0.513 6.513 24 O -0.514 6.514 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.391 0.609 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -3.326 -23.993 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 C -0.204 4.204 4 C -0.151 4.151 5 C 0.008 3.992 6 N -0.397 5.397 7 C 0.026 3.974 8 C -0.168 4.168 9 C -0.171 4.171 10 C 0.061 3.939 11 O -0.093 6.093 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.167 4.167 15 N -0.506 5.506 16 Si 0.763 3.237 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.197 1.197 20 C -0.210 4.210 21 C -0.164 4.164 22 C 0.330 3.670 23 O -0.401 6.401 24 O -0.325 6.325 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.435 -2.910 -23.444 23.750 hybrid contribution 0.824 -1.320 0.122 1.561 sum 3.259 -4.230 -23.323 23.926 Atomic orbital electron populations 1.21978 0.91204 1.03229 1.04012 1.20421 0.98221 0.96825 0.89401 1.21979 1.01722 0.92707 1.04011 1.21679 1.02045 0.99848 0.91509 1.21218 0.98438 0.95866 0.83682 1.44159 1.60160 1.33595 1.01766 1.17385 0.99895 0.95798 0.84344 1.20158 1.02796 0.97478 0.96357 1.20021 1.04725 1.02327 0.89985 1.19242 0.94701 0.92931 0.87066 1.83987 1.69838 1.45598 1.09911 1.21184 1.32361 1.09181 0.83640 0.89519 1.25212 0.96557 0.97061 0.97863 1.70042 1.34075 1.23828 1.22661 0.85839 0.78883 0.79270 0.79737 1.19694 1.20437 1.19689 1.20994 1.03471 0.99448 0.97046 1.20244 1.03985 1.00928 0.91229 1.23500 0.76644 0.82154 0.84737 1.90730 1.35851 1.26231 1.87283 1.84532 1.72204 1.58987 1.16812 0.90079 0.91074 0.91898 0.91902 0.91079 0.90075 0.90432 0.90434 0.92537 0.92533 0.77573 0.87193 0.86527 0.92270 0.85515 0.87625 0.73290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.05 37.16 0.30 -0.68 16 2 C -0.05 -0.36 0.74 -155.66 -0.11 -0.48 16 3 C -0.15 -0.98 8.05 37.15 0.30 -0.68 16 4 C -0.11 -1.02 3.67 -26.73 -0.10 -1.12 16 5 C 0.13 1.39 4.21 -4.04 -0.02 1.37 16 6 N -0.76 -10.10 5.74 -58.58 -0.34 -10.44 16 7 C 0.12 2.13 6.66 -83.70 -0.56 1.57 16 8 C -0.15 -2.60 9.31 -39.40 -0.37 -2.97 16 9 C -0.15 -3.21 9.98 -39.42 -0.39 -3.60 16 10 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 11 O -0.19 -5.49 9.76 -0.06 0.00 -5.49 16 12 C -0.39 -11.05 9.48 30.87 0.29 -10.76 16 13 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 14 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 15 N -0.87 -26.08 13.67 55.48 0.76 -25.32 16 16 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.19 -4.19 9.16 -39.42 -0.36 -4.55 16 21 C -0.14 -2.64 9.89 -39.40 -0.39 -3.03 16 22 C 0.49 4.29 6.92 36.01 0.25 4.54 16 23 O -0.51 -6.16 16.74 -18.75 -0.31 -6.47 16 24 O -0.51 -3.20 13.23 -39.25 -0.52 -3.72 16 25 H 0.08 0.52 6.43 -51.93 -0.33 0.18 16 26 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.11 -51.92 -0.42 -0.01 16 30 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.06 0.58 6.24 -51.93 -0.32 0.26 16 34 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16 35 H 0.39 4.67 8.49 -40.82 -0.35 4.33 16 36 H 0.11 1.63 6.73 -52.49 -0.35 1.28 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.41 0.95 9.10 45.56 0.41 1.36 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -34.16 341.87 -6.47 -40.63 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.68 Total: 6.61 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.51 Total: -16.94 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.42 Total: -35.76 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.83 Total: -15.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.16 -6.47 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603613483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.797 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds