Wall clock time and date at job start Tue Mar 31 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47105 * 2 1 4 4 C 1.53000 * 109.47166 * 119.99932 * 2 1 3 5 5 C 1.53003 * 109.46843 * 300.00054 * 4 2 1 6 6 N 1.46500 * 109.46921 * 179.97438 * 5 4 2 7 7 C 1.39782 * 120.00087 * 180.02562 * 6 5 4 8 8 C 1.38956 * 120.00487 * 359.72338 * 7 6 5 9 9 C 1.38013 * 119.99008 * 179.72309 * 8 7 6 10 10 C 1.38899 * 120.00511 * 0.55423 * 9 8 7 11 11 O 1.35798 * 119.98862 * 179.69977 * 10 9 8 12 12 C 1.34818 * 116.99804 * 174.48089 * 11 10 9 13 13 H 1.07997 * 119.99862 * 5.05034 * 12 11 10 14 14 C 1.38618 * 119.99980 * 185.06170 * 12 11 10 15 15 N 1.31590 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46828 * 59.99313 * 16 14 12 18 18 H 1.48495 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46610 * 299.99633 * 16 14 12 20 20 C 1.38893 * 120.01764 * 359.72264 * 10 9 8 21 21 C 1.38018 * 120.00244 * 359.97438 * 20 10 9 22 22 C 1.50704 * 109.47176 * 239.99728 * 2 1 3 23 23 O 1.20827 * 119.99992 * 240.00251 * 22 2 1 24 24 O 1.34227 * 119.99609 * 59.99838 * 22 2 1 25 25 H 1.08995 * 109.47125 * 300.00085 * 1 2 3 26 26 H 1.08997 * 109.47218 * 60.00459 * 1 2 3 27 27 H 1.09002 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47376 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47429 * 299.99660 * 3 2 1 30 30 H 1.09003 * 109.47497 * 59.99962 * 3 2 1 31 31 H 1.08999 * 109.47250 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46943 * 59.99526 * 4 2 1 33 33 H 1.08999 * 109.47273 * 59.99922 * 5 4 2 34 34 H 1.08997 * 109.47271 * 299.99805 * 5 4 2 35 35 H 0.97006 * 120.00257 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00178 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.99091 * 180.25449 * 9 8 7 38 38 H 0.96997 * 119.99578 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.00388 * 179.97438 * 20 10 9 40 40 H 1.07998 * 119.99940 * 179.97438 * 21 20 10 41 41 H 0.96699 * 116.99753 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 0.0001 2.4985 6 7 2.0178 -0.6908 3.6946 7 6 1.6796 -0.2137 4.9642 8 6 0.8854 0.9194 5.0918 9 6 0.5469 1.3870 6.3454 10 6 1.0095 0.7318 7.4794 11 8 0.6813 1.1957 8.7128 12 6 1.0656 0.4512 9.7690 13 1 1.6786 -0.4250 9.6176 14 6 0.6737 0.8100 11.0493 15 7 -0.0731 1.8777 11.2337 16 14 1.2055 -0.2220 12.5127 17 1 2.6885 -0.2498 12.5858 18 1 0.6598 0.3700 13.7604 19 1 0.6916 -1.6062 12.3550 20 6 1.8081 -0.3975 7.3522 21 6 2.1418 -0.8692 6.0988 22 6 2.0324 -0.7105 -1.2305 23 8 2.7270 -1.6929 -1.1195 24 8 1.7080 -0.2519 -2.4495 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2493 33 1 0.4400 0.0001 2.4984 34 1 1.8933 1.0277 2.4985 35 1 2.5749 -1.4800 3.6057 36 1 0.5290 1.4312 4.2101 37 1 -0.0738 2.2652 6.4446 38 1 -0.3470 2.1290 12.1296 39 1 2.1680 -0.9065 8.2341 40 1 2.7631 -1.7470 6.0000 41 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603613483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:14 Heat of formation + Delta-G solvation = -124.122264 kcal Electronic energy + Delta-G solvation = -22551.747161 eV Core-core repulsion = 19010.064282 eV Total energy + Delta-G solvation = -3541.682879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64729 -40.67815 -38.98270 -37.80444 -37.06164 -35.30265 -34.03963 -31.81545 -30.58527 -28.32389 -28.13341 -26.97844 -25.93535 -24.27232 -23.11516 -22.20715 -20.32915 -19.60588 -18.89150 -18.85221 -17.70845 -17.51440 -16.80871 -16.50887 -16.16377 -16.05453 -15.50717 -15.35383 -15.26635 -14.64282 -14.54936 -14.29484 -14.27828 -14.03097 -13.42434 -13.39179 -13.34539 -12.93382 -12.83105 -12.66364 -12.56862 -12.49618 -12.24713 -12.21419 -12.09150 -11.89295 -11.84326 -11.32504 -11.07318 -10.86046 -10.12926 -9.74206 -8.37612 -7.90635 -6.01035 0.61852 0.96247 1.17142 1.37499 1.48690 1.53470 2.01592 2.24082 2.69628 2.93579 3.28167 3.64068 3.70764 3.75270 3.84030 4.12983 4.20332 4.22825 4.31085 4.36558 4.59342 4.63450 4.71570 4.78599 4.82275 4.88362 4.97056 5.00662 5.01019 5.11364 5.15454 5.30690 5.35016 5.35616 5.50608 5.57797 5.58887 5.81605 6.01649 6.13559 6.64638 6.96591 7.03440 7.08530 7.95463 8.86643 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.002397 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.850918 B =11679.077376 C =12066.506492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.128 3.872 6 N -0.749 5.749 7 C 0.152 3.848 8 C -0.143 4.143 9 C -0.154 4.154 10 C 0.061 3.939 11 O -0.242 6.242 12 C -0.406 4.406 13 H 0.097 0.903 14 C -0.029 4.029 15 N -0.926 5.926 16 Si 1.016 2.984 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.195 4.195 21 C -0.148 4.148 22 C 0.492 3.508 23 O -0.552 6.552 24 O -0.507 6.507 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.269 0.731 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -4.365 -26.514 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.142 4.142 5 C 0.004 3.996 6 N -0.384 5.384 7 C 0.051 3.949 8 C -0.165 4.165 9 C -0.174 4.174 10 C 0.011 3.989 11 O -0.150 6.150 12 C -0.483 4.483 13 H 0.114 0.886 14 C -0.225 4.225 15 N -0.566 5.566 16 Si 0.835 3.165 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.184 1.184 20 C -0.215 4.215 21 C -0.170 4.170 22 C 0.335 3.665 23 O -0.442 6.442 24 O -0.320 6.320 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.166 0.834 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.112 -3.973 -26.089 26.573 hybrid contribution 0.666 -1.040 0.425 1.306 sum 3.778 -5.013 -25.665 26.421 Atomic orbital electron populations 1.21992 0.90202 1.03259 1.04848 1.20420 0.98909 0.97088 0.88340 1.21993 1.01531 0.91921 1.04852 1.21547 1.01587 0.99508 0.91566 1.21440 0.99088 0.96236 0.82796 1.44308 1.59283 1.33682 1.01129 1.17519 0.97294 0.94432 0.85633 1.20467 1.02282 0.97640 0.96105 1.20260 1.04472 1.02152 0.90524 1.19764 0.97334 0.95220 0.86575 1.83933 1.72248 1.47398 1.11444 1.21698 1.32584 1.09611 0.84367 0.88558 1.26512 0.96549 0.98470 1.00951 1.70199 1.36597 1.26365 1.23455 0.84689 0.78985 0.77577 0.75206 1.18322 1.19777 1.18361 1.21046 1.03217 0.98823 0.98369 1.20498 1.04312 1.01958 0.90259 1.23674 0.75743 0.81431 0.85616 1.90723 1.37694 1.27935 1.87875 1.84489 1.71786 1.58922 1.16811 0.89447 0.90092 0.92281 0.92263 0.90101 0.89433 0.91062 0.91090 0.91481 0.91431 0.76422 0.83425 0.86699 0.92167 0.86513 0.84617 0.71243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.05 71.98 0.58 -0.90 16 2 C -0.05 -0.57 0.74 -52.93 -0.04 -0.61 16 3 C -0.15 -1.47 8.05 71.98 0.58 -0.89 16 4 C -0.10 -1.58 3.67 30.60 0.11 -1.47 16 5 C 0.13 2.16 4.21 86.38 0.36 2.53 16 6 N -0.75 -16.98 5.74 -339.25 -1.95 -18.93 16 7 C 0.15 4.76 6.66 38.22 0.25 5.01 16 8 C -0.14 -4.73 9.31 22.39 0.21 -4.53 16 9 C -0.15 -6.59 9.98 22.37 0.22 -6.37 16 10 C 0.06 3.08 6.65 22.59 0.15 3.23 16 11 O -0.24 -14.95 9.76 -23.15 -0.23 -15.18 16 12 C -0.41 -24.30 9.48 67.91 0.64 -23.65 16 13 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 14 C -0.03 -1.67 5.49 84.82 0.47 -1.21 16 15 N -0.93 -58.32 13.67 21.61 0.30 -58.02 16 16 Si 1.02 44.12 29.55 68.60 2.03 46.14 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 C -0.19 -8.69 9.16 22.37 0.20 -8.48 16 21 C -0.15 -5.21 9.89 22.39 0.22 -4.99 16 22 C 0.49 7.54 6.92 71.24 0.49 8.03 16 23 O -0.55 -12.40 16.74 21.96 0.37 -12.03 16 24 O -0.51 -4.96 13.23 -51.39 -0.68 -5.64 16 25 H 0.09 0.78 6.43 -2.39 -0.02 0.77 16 26 H 0.08 0.68 8.11 -2.39 -0.02 0.66 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.67 8.11 -2.38 -0.02 0.65 16 30 H 0.09 0.78 6.43 -2.39 -0.02 0.76 16 31 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.07 1.08 6.24 -2.39 -0.01 1.06 16 34 H 0.07 1.08 6.23 -2.39 -0.01 1.06 16 35 H 0.40 8.01 8.49 -92.70 -0.79 7.22 16 36 H 0.15 3.75 6.73 -2.91 -0.02 3.73 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.12 5.32 5.63 -2.91 -0.02 5.30 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.43 0.91 9.10 -74.06 -0.67 0.24 16 Total: -1.00 -78.43 341.87 3.92 -74.51 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -0.39 Total: 23.43 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.46 Total: -34.29 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.65 Total: -76.95 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.54 Total: -32.85 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -78.43 3.92 -74.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603613483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.608 kcal (2) G-P(sol) polarization free energy of solvation -78.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds