Wall clock time and date at job start Tue Mar 31 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48508 * 109.47214 * 239.99954 * 3 2 1 5 5 H 1.48493 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47034 * 120.00271 * 3 2 1 7 7 C 1.37877 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53049 * 109.45955 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31192 * 181.38912 * 10 9 7 12 12 N 1.46931 * 108.77407 * 305.36281 * 11 10 9 13 13 C 1.34775 * 120.63074 * 233.58879 * 12 11 10 14 14 O 1.21277 * 120.00116 * 5.05900 * 13 12 11 15 15 C 1.50697 * 120.00037 * 185.06449 * 13 12 11 16 16 C 1.50700 * 110.91817 * 56.97553 * 15 13 12 17 17 O 1.20826 * 120.00678 * 240.42375 * 16 15 13 18 18 O 1.34231 * 119.99301 * 60.42567 * 16 15 13 19 19 C 1.54646 * 111.03393 * 293.01477 * 15 13 12 20 20 C 1.51097 * 104.82276 * 266.54483 * 19 15 13 21 21 C 1.30725 * 110.99420 * 343.70718 * 20 19 15 22 22 C 1.51101 * 111.13574 * 359.84282 * 21 20 19 23 23 C 1.46928 * 118.73635 * 53.86483 * 12 11 10 24 24 C 1.53039 * 109.46312 * 300.06923 * 9 7 2 25 25 H 0.96999 * 119.99490 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.44964 * 60.04273 * 9 7 2 27 27 H 1.09000 * 109.49172 * 61.43567 * 10 9 7 28 28 H 1.09003 * 109.49458 * 301.34212 * 10 9 7 29 29 H 1.09002 * 109.58144 * 185.58374 * 11 10 9 30 30 H 1.08995 * 109.58993 * 65.15137 * 11 10 9 31 31 H 0.96700 * 116.99979 * 179.97438 * 18 16 15 32 32 H 1.09001 * 110.38636 * 25.41382 * 19 15 13 33 33 H 1.09000 * 110.38593 * 147.67584 * 19 15 13 34 34 H 1.08001 * 124.44430 * 163.60138 * 20 19 15 35 35 H 1.07997 * 124.41252 * 179.97438 * 21 20 19 36 36 H 1.08997 * 110.39045 * 257.72381 * 22 21 20 37 37 H 1.09003 * 110.48224 * 135.39159 * 22 21 20 38 38 H 1.09001 * 109.58774 * 65.92576 * 23 12 11 39 39 H 1.09005 * 109.58633 * 186.35113 * 23 12 11 40 40 H 1.08999 * 109.50137 * 298.56802 * 24 9 7 41 41 H 1.09000 * 109.49500 * 58.66496 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2457 -3.6623 -0.0005 11 6 1.4766 -4.9866 -0.0356 12 7 0.5221 -5.0089 1.0813 13 6 0.5112 -6.0352 1.9549 14 8 1.3523 -6.9055 1.8785 15 6 -0.5463 -6.1012 3.0265 16 6 -1.9267 -6.0816 2.4222 17 8 -2.6954 -5.1919 2.7002 18 8 -2.3022 -7.0528 1.5751 19 6 -0.3720 -4.9548 4.0497 20 6 0.4704 -5.5479 5.1550 21 6 0.4837 -6.8532 5.0847 22 6 -0.3499 -7.3448 3.9243 23 6 -0.4242 -3.8941 1.2241 24 6 0.3703 -2.5795 1.2485 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5566 -0.8908 27 1 2.8555 -3.6193 0.9019 28 1 2.8883 -3.5913 -0.8781 29 1 2.1751 -5.8175 0.0642 30 1 0.9372 -5.0711 -0.9789 31 1 -3.1972 -6.9979 1.2132 32 1 0.1433 -4.1111 3.5905 33 1 -1.3412 -4.6413 4.4374 34 1 0.9931 -4.9692 5.9022 35 1 1.0188 -7.4958 5.7681 36 1 -1.3127 -7.7138 4.2778 37 1 0.1787 -8.1269 3.3792 38 1 -1.1155 -3.8913 0.3813 39 1 -0.9803 -4.0038 2.1552 40 1 0.9981 -2.5470 2.1390 41 1 -0.3222 -1.7378 1.2602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:02 Heat of formation + Delta-G solvation = -104.526714 kcal Electronic energy + Delta-G solvation = -25083.743723 eV Core-core repulsion = 21542.910571 eV Total energy + Delta-G solvation = -3540.833152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51362 -39.43527 -37.83859 -36.77458 -36.13159 -33.60992 -31.64373 -30.38965 -29.81116 -28.26851 -26.29114 -23.89547 -23.38728 -22.45550 -21.35366 -19.69639 -19.31975 -18.49748 -17.84982 -17.50959 -16.47710 -16.34369 -15.89037 -15.39094 -14.73150 -14.56600 -14.33607 -13.89016 -13.23021 -13.11678 -12.90928 -12.83914 -12.58427 -12.45743 -12.33651 -12.06224 -11.78798 -11.57479 -11.45039 -11.38641 -11.09708 -10.93852 -10.71585 -10.63646 -10.42825 -10.13067 -9.73456 -9.53605 -9.21012 -9.00394 -8.91305 -8.40417 -8.09723 -6.04498 -4.11150 1.95910 2.19165 2.53606 2.98659 3.23521 3.28910 3.34031 3.36681 4.26858 4.36581 4.39656 4.56505 5.05786 5.13065 5.24741 5.29050 5.49615 5.55705 5.60562 5.72875 5.78746 5.81860 5.89042 5.95220 6.03533 6.09212 6.21298 6.33675 6.37783 6.43900 6.60824 6.77564 6.82268 6.98380 7.08130 7.23259 7.62822 7.69728 7.79452 7.88102 8.01087 8.34275 8.37468 8.92008 9.54172 11.01006 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.004810 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.115308 B = 5819.467387 C = 5868.766416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.594 5.594 13 C 0.535 3.465 14 O -0.536 6.536 15 C -0.081 4.081 16 C 0.502 3.498 17 O -0.497 6.497 18 O -0.506 6.506 19 C -0.090 4.090 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.074 4.074 23 C 0.081 3.919 24 C -0.120 4.120 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.412 0.588 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -12.779 6.868 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.325 5.325 13 C 0.321 3.679 14 O -0.414 6.414 15 C -0.085 4.085 16 C 0.343 3.657 17 O -0.384 6.384 18 O -0.318 6.318 19 C -0.127 4.127 20 C -0.178 4.178 21 C -0.178 4.178 22 C -0.111 4.111 23 C -0.040 4.040 24 C -0.158 4.158 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.271 0.729 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.700 -12.864 7.022 15.116 hybrid contribution -0.231 1.153 -0.275 1.208 sum -3.931 -11.711 6.747 14.076 Atomic orbital electron populations 1.69824 1.05857 1.26652 1.50661 1.24961 0.94861 0.99066 0.95023 0.86671 0.79623 0.83163 0.78620 1.20308 1.21298 1.20318 1.21145 0.92902 0.90489 1.50598 0.92704 1.18641 0.92622 0.91806 0.93935 1.22014 0.98919 0.94042 1.01149 1.21770 0.91661 1.00051 0.87526 1.48238 1.35926 1.20779 1.27586 1.19413 0.85037 0.82012 0.81458 1.90641 1.38993 1.39365 1.72403 1.21505 0.89126 1.01760 0.96119 1.22521 0.88889 0.78487 0.75808 1.90751 1.53703 1.35411 1.58506 1.84555 1.39314 1.50031 1.57867 1.21612 1.02146 0.96209 0.92756 1.23269 0.99412 0.96035 0.99127 1.23174 0.99680 0.96338 0.98560 1.21250 1.00437 0.95672 0.93736 1.22588 0.91801 0.87888 1.01761 1.22077 0.99882 0.94214 0.99619 0.92856 0.95472 0.92808 0.91968 0.90114 0.91962 0.72861 0.88504 0.87774 0.84753 0.84980 0.89898 0.88073 0.92059 0.89897 0.94087 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 11.31 55.43 0.63 -23.83 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 11 C 0.11 2.04 6.44 -3.71 -0.02 2.01 16 12 N -0.59 -10.83 2.96 -172.50 -0.51 -11.34 16 13 C 0.54 9.43 6.47 -10.99 -0.07 9.36 16 14 O -0.54 -10.49 14.94 5.56 0.08 -10.41 16 15 C -0.08 -1.18 0.53 -155.09 -0.08 -1.27 16 16 C 0.50 7.08 5.42 36.01 0.20 7.27 16 17 O -0.50 -7.79 15.03 -18.75 -0.28 -8.07 16 18 O -0.51 -5.86 13.38 -39.26 -0.53 -6.39 16 19 C -0.09 -1.27 4.51 -26.82 -0.12 -1.39 16 20 C -0.16 -1.97 10.79 -35.76 -0.39 -2.35 16 21 C -0.16 -1.86 10.78 -35.75 -0.39 -2.24 16 22 C -0.07 -0.92 5.72 -26.83 -0.15 -1.07 16 23 C 0.08 1.53 4.69 -3.48 -0.02 1.51 16 24 C -0.12 -2.66 5.08 -26.39 -0.13 -2.79 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.41 2.77 9.10 45.56 0.41 3.19 16 32 H 0.10 1.53 5.87 -51.93 -0.30 1.22 16 33 H 0.10 1.41 7.03 -51.93 -0.36 1.05 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 37 H 0.10 1.35 7.00 -51.93 -0.36 0.99 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.46 2.86 -51.93 -0.15 1.31 16 40 H 0.04 0.91 7.81 -51.93 -0.41 0.51 16 41 H 0.11 2.64 6.03 -51.93 -0.31 2.33 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -30.58 323.59 -7.41 -37.99 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.76 Total: 6.37 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.90 Total: -4.95 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.12 Total: -35.17 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.72 Total: -24.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.58 -7.41 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.536 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds