Wall clock time and date at job start Tue Mar 31 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48508 * 109.47214 * 239.99954 * 3 2 1 5 5 H 1.48493 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47034 * 120.00271 * 3 2 1 7 7 C 1.37877 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53049 * 109.45955 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31192 * 181.38912 * 10 9 7 12 12 N 1.46931 * 108.77407 * 305.36281 * 11 10 9 13 13 C 1.34775 * 120.63074 * 233.58879 * 12 11 10 14 14 O 1.21277 * 120.00116 * 5.05900 * 13 12 11 15 15 C 1.50697 * 120.00037 * 185.06449 * 13 12 11 16 16 C 1.50700 * 110.91817 * 56.97553 * 15 13 12 17 17 O 1.20826 * 120.00678 * 240.42375 * 16 15 13 18 18 O 1.34231 * 119.99301 * 60.42567 * 16 15 13 19 19 C 1.54646 * 111.03393 * 293.01477 * 15 13 12 20 20 C 1.51097 * 104.82276 * 266.54483 * 19 15 13 21 21 C 1.30725 * 110.99420 * 343.70718 * 20 19 15 22 22 C 1.51101 * 111.13574 * 359.84282 * 21 20 19 23 23 C 1.46928 * 118.73635 * 53.86483 * 12 11 10 24 24 C 1.53039 * 109.46312 * 300.06923 * 9 7 2 25 25 H 0.96999 * 119.99490 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.44964 * 60.04273 * 9 7 2 27 27 H 1.09000 * 109.49172 * 61.43567 * 10 9 7 28 28 H 1.09003 * 109.49458 * 301.34212 * 10 9 7 29 29 H 1.09002 * 109.58144 * 185.58374 * 11 10 9 30 30 H 1.08995 * 109.58993 * 65.15137 * 11 10 9 31 31 H 0.96700 * 116.99979 * 179.97438 * 18 16 15 32 32 H 1.09001 * 110.38636 * 25.41382 * 19 15 13 33 33 H 1.09000 * 110.38593 * 147.67584 * 19 15 13 34 34 H 1.08001 * 124.44430 * 163.60138 * 20 19 15 35 35 H 1.07997 * 124.41252 * 179.97438 * 21 20 19 36 36 H 1.08997 * 110.39045 * 257.72381 * 22 21 20 37 37 H 1.09003 * 110.48224 * 135.39159 * 22 21 20 38 38 H 1.09001 * 109.58774 * 65.92576 * 23 12 11 39 39 H 1.09005 * 109.58633 * 186.35113 * 23 12 11 40 40 H 1.08999 * 109.50137 * 298.56802 * 24 9 7 41 41 H 1.09000 * 109.49500 * 58.66496 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2457 -3.6623 -0.0005 11 6 1.4766 -4.9866 -0.0356 12 7 0.5221 -5.0089 1.0813 13 6 0.5112 -6.0352 1.9549 14 8 1.3523 -6.9055 1.8785 15 6 -0.5463 -6.1012 3.0265 16 6 -1.9267 -6.0816 2.4222 17 8 -2.6954 -5.1919 2.7002 18 8 -2.3022 -7.0528 1.5751 19 6 -0.3720 -4.9548 4.0497 20 6 0.4704 -5.5479 5.1550 21 6 0.4837 -6.8532 5.0847 22 6 -0.3499 -7.3448 3.9243 23 6 -0.4242 -3.8941 1.2241 24 6 0.3703 -2.5795 1.2485 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5566 -0.8908 27 1 2.8555 -3.6193 0.9019 28 1 2.8883 -3.5913 -0.8781 29 1 2.1751 -5.8175 0.0642 30 1 0.9372 -5.0711 -0.9789 31 1 -3.1972 -6.9979 1.2132 32 1 0.1433 -4.1111 3.5905 33 1 -1.3412 -4.6413 4.4374 34 1 0.9931 -4.9692 5.9022 35 1 1.0188 -7.4958 5.7681 36 1 -1.3127 -7.7138 4.2778 37 1 0.1787 -8.1269 3.3792 38 1 -1.1155 -3.8913 0.3813 39 1 -0.9803 -4.0038 2.1552 40 1 0.9981 -2.5470 2.1390 41 1 -0.3222 -1.7378 1.2602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:01 Heat of formation + Delta-G solvation = -123.044981 kcal Electronic energy + Delta-G solvation = -25084.546735 eV Core-core repulsion = 21542.910571 eV Total energy + Delta-G solvation = -3541.636164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70866 -40.70187 -39.12083 -38.17767 -37.22519 -35.42407 -33.32024 -31.99204 -31.09638 -29.31732 -28.09417 -25.27513 -24.73659 -24.09593 -22.80350 -21.17406 -20.36300 -19.85238 -19.01463 -18.72259 -18.29144 -17.61852 -17.30578 -16.56320 -16.48648 -16.15065 -15.57260 -15.06266 -14.93833 -14.64989 -14.59411 -14.15817 -13.82132 -13.76746 -13.58404 -13.38888 -13.22182 -12.97168 -12.80960 -12.66804 -12.53899 -12.50081 -12.22330 -12.16855 -12.00662 -11.79082 -11.50046 -11.08784 -11.03918 -10.77595 -10.41945 -9.91135 -9.67430 -8.08583 -6.22351 0.84004 1.24586 1.30071 1.43066 1.43465 1.50978 1.84160 1.88874 2.43802 3.16667 3.18087 3.18405 3.39190 4.00071 4.09057 4.17765 4.22110 4.26764 4.29414 4.36711 4.51308 4.53501 4.58263 4.62432 4.72825 4.78144 4.83132 4.91204 5.01519 5.15260 5.17645 5.36749 5.37903 5.44798 5.52289 5.61848 5.87738 5.94744 6.08038 6.28730 6.36952 6.78632 6.87143 6.91071 7.45820 8.94940 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.004810 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.115308 B = 5819.467387 C = 5868.766416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.598 5.598 13 C 0.536 3.464 14 O -0.554 6.554 15 C -0.086 4.086 16 C 0.507 3.493 17 O -0.516 6.516 18 O -0.502 6.502 19 C -0.091 4.091 20 C -0.174 4.174 21 C -0.153 4.153 22 C -0.073 4.073 23 C 0.098 3.902 24 C -0.109 4.109 25 H 0.262 0.738 26 H 0.002 0.998 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.434 0.566 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 -13.883 7.672 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.330 5.330 13 C 0.323 3.677 14 O -0.433 6.433 15 C -0.091 4.091 16 C 0.348 3.652 17 O -0.405 6.405 18 O -0.316 6.316 19 C -0.128 4.128 20 C -0.192 4.192 21 C -0.171 4.171 22 C -0.110 4.110 23 C -0.024 4.024 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.297 0.703 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.660 -13.992 7.814 16.438 hybrid contribution -0.256 1.450 -0.572 1.579 sum -3.915 -12.542 7.242 15.003 Atomic orbital electron populations 1.69952 1.06951 1.27248 1.51131 1.25657 0.95643 1.02065 0.94785 0.85743 0.78487 0.79508 0.78683 1.19853 1.20972 1.19918 1.21494 0.92976 0.92024 1.50710 0.93143 1.18611 0.93025 0.92295 0.93373 1.21857 0.98259 0.93961 1.01041 1.21715 0.91841 0.98836 0.88241 1.48242 1.35835 1.20927 1.27967 1.19844 0.85293 0.81184 0.81395 1.90627 1.39944 1.39866 1.72907 1.21562 0.88584 1.03351 0.95560 1.22369 0.88493 0.78494 0.75823 1.90751 1.54225 1.36230 1.59307 1.84508 1.41142 1.48895 1.57045 1.21585 1.02525 0.95440 0.93234 1.23379 1.00005 0.96527 0.99290 1.23440 0.98969 0.96392 0.98251 1.21328 1.01800 0.94329 0.93515 1.22318 0.91252 0.86436 1.02388 1.21820 0.99190 0.95205 0.98534 0.92923 0.97959 0.93651 0.91270 0.89306 0.90838 0.70331 0.90743 0.87477 0.83102 0.82362 0.87647 0.88772 0.92385 0.88455 0.94853 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.01 11.31 21.45 0.24 -50.77 16 2 C 0.02 0.94 5.30 84.66 0.45 1.39 16 3 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -28.69 8.56 25.60 0.22 -28.47 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.05 2.20 2.06 -11.51 -0.02 2.18 16 10 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 11 C 0.12 4.13 6.44 86.36 0.56 4.69 16 12 N -0.60 -21.47 2.96 -818.05 -2.42 -23.89 16 13 C 0.54 18.25 6.47 87.66 0.57 18.82 16 14 O -0.55 -20.93 14.94 -3.02 -0.05 -20.97 16 15 C -0.09 -2.40 0.53 -52.56 -0.03 -2.43 16 16 C 0.51 13.45 5.42 71.24 0.39 13.83 16 17 O -0.52 -15.55 15.03 21.96 0.33 -15.22 16 18 O -0.50 -10.50 13.38 -51.43 -0.69 -11.19 16 19 C -0.09 -2.47 4.51 30.53 0.14 -2.33 16 20 C -0.17 -3.94 10.79 26.05 0.28 -3.66 16 21 C -0.15 -3.15 10.78 26.06 0.28 -2.87 16 22 C -0.07 -1.64 5.72 30.53 0.17 -1.47 16 23 C 0.10 3.70 4.69 86.51 0.41 4.11 16 24 C -0.11 -4.95 5.08 30.82 0.16 -4.80 16 25 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.09 3.07 7.00 -2.39 -0.02 3.05 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.43 4.77 9.10 -74.06 -0.67 4.10 16 32 H 0.07 2.34 5.87 -2.39 -0.01 2.33 16 33 H 0.11 2.81 7.03 -2.39 -0.02 2.80 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.11 1.90 7.88 -2.39 -0.02 1.89 16 37 H 0.09 2.31 7.00 -2.39 -0.02 2.29 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 3.42 2.86 -2.38 -0.01 3.42 16 40 H 0.03 1.52 7.81 -2.39 -0.02 1.51 16 41 H 0.08 4.01 6.03 -2.39 -0.01 3.99 16 Total: -1.00 -65.08 323.59 3.55 -61.53 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.39 Total: 21.15 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 3.72 Total: -5.46 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.18 Total: -74.66 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.40 Total: -47.38 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.08 3.55 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.518 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds