Wall clock time and date at job start Tue Mar 31 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47114 * 2 1 4 4 C 1.38165 * 120.02905 * 265.00573 * 3 2 1 5 5 C 1.38237 * 120.05237 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.11667 * 359.96520 * 5 4 3 7 7 C 1.38122 * 120.05511 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.03094 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47103 * 259.99736 * 8 7 6 10 10 C 1.36936 * 119.99665 * 269.99852 * 9 8 7 11 11 H 1.08004 * 119.99800 * 141.46280 * 10 9 8 12 12 C 1.38814 * 120.00257 * 321.45590 * 10 9 8 13 13 N 1.31618 * 119.99792 * 340.88055 * 12 10 9 14 14 Si 1.86796 * 120.00343 * 160.88252 * 12 10 9 15 15 H 1.48499 * 109.47246 * 89.99876 * 14 12 10 16 16 H 1.48496 * 109.47316 * 210.00165 * 14 12 10 17 17 H 1.48506 * 109.46878 * 330.00043 * 14 12 10 18 18 C 1.46501 * 120.00265 * 89.99871 * 9 8 7 19 19 C 1.53000 * 109.47173 * 95.06563 * 18 9 8 20 20 C 1.50698 * 109.47135 * 180.02562 * 19 18 9 21 21 O 1.20828 * 119.99716 * 359.97438 * 20 19 18 22 22 O 1.34229 * 120.00334 * 179.97438 * 20 19 18 23 23 C 1.38716 * 120.02537 * 84.97373 * 3 2 1 24 24 O 1.35897 * 120.05504 * 0.05222 * 23 3 2 25 25 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47059 * 299.99696 * 1 2 3 27 27 H 1.08994 * 109.47095 * 59.99906 * 1 2 3 28 28 H 1.08997 * 109.47059 * 240.00304 * 2 1 3 29 29 H 1.09003 * 109.46816 * 120.00025 * 2 1 3 30 30 H 1.08001 * 119.97112 * 359.96866 * 4 3 2 31 31 H 1.08009 * 119.94080 * 179.69866 * 5 4 3 32 32 H 1.07997 * 119.97435 * 179.97438 * 6 5 4 33 33 H 1.09008 * 109.47114 * 19.99104 * 8 7 6 34 34 H 1.09002 * 109.47694 * 139.99145 * 8 7 6 35 35 H 0.97004 * 120.00195 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46829 * 215.06630 * 18 9 8 37 37 H 1.09000 * 109.46852 * 335.06521 * 18 9 8 38 38 H 1.08998 * 109.46814 * 299.99986 * 19 18 9 39 39 H 1.09000 * 109.47266 * 60.00211 * 19 18 9 40 40 H 0.96698 * 116.99803 * 179.97438 * 22 20 19 41 41 H 0.96704 * 114.00496 * 89.99511 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0380 -1.1917 5 6 2.8224 3.3411 -1.1922 6 6 2.9555 4.0305 -0.0008 7 6 2.6281 3.4181 1.1932 8 6 2.7728 4.1701 2.4910 9 7 4.0184 3.7705 3.1506 10 6 4.0224 2.7171 4.0255 11 1 4.8568 2.0315 4.0415 12 6 2.9541 2.5304 4.8920 13 7 2.1354 3.5277 5.1518 14 14 2.6783 0.8638 5.6894 15 1 3.4128 0.8043 6.9786 16 1 1.2274 0.6674 5.9368 17 1 3.1757 -0.2052 4.7865 18 6 5.2597 4.4979 2.8743 19 6 5.4690 5.5736 3.9420 20 6 6.7455 6.3222 3.6573 21 8 7.4190 6.0255 2.6991 22 8 7.1344 7.3186 4.4683 23 6 2.1645 2.1103 1.1964 24 8 1.8423 1.5053 2.3698 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2583 1.5015 -2.1234 31 1 3.0834 3.8202 -2.1243 32 1 3.3165 5.0484 -0.0038 33 1 2.7957 5.2412 2.2898 34 1 1.9279 3.9404 3.1403 35 1 1.3891 3.3974 5.7575 36 1 6.0991 3.8028 2.8893 37 1 5.1946 4.9678 1.8929 38 1 4.6295 6.2686 3.9269 39 1 5.5341 5.1036 4.9233 40 1 7.9604 7.7692 4.2452 41 1 2.5790 1.0374 2.7865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605830319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:26 Heat of formation + Delta-G solvation = -103.594672 kcal Electronic energy + Delta-G solvation = -24255.173539 eV Core-core repulsion = 20714.380803 eV Total energy + Delta-G solvation = -3540.792736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80169 -39.38143 -36.18281 -35.74124 -35.56460 -33.62425 -32.03464 -30.85205 -29.05272 -28.40551 -25.53333 -24.77084 -23.48966 -22.07747 -20.96533 -20.11418 -19.58629 -17.72860 -17.49523 -16.71461 -15.97304 -15.57192 -15.47864 -15.21460 -14.64309 -14.52794 -13.72004 -13.57199 -13.31349 -13.20609 -13.17830 -12.68557 -12.40133 -12.33896 -11.73201 -11.66771 -11.47211 -11.23253 -11.13624 -11.10196 -10.94422 -10.78883 -10.58269 -10.51102 -10.29972 -10.10346 -9.98771 -9.92095 -9.48104 -8.58538 -8.05122 -7.78442 -6.72499 -5.91926 -3.52529 1.91082 1.98251 2.64789 3.26815 3.33868 3.39366 3.52608 4.23291 4.38649 5.12443 5.16973 5.23392 5.30641 5.50211 5.54380 5.64077 5.69389 5.78580 5.82616 5.85269 5.90372 6.09417 6.13887 6.14433 6.34686 6.39229 6.44229 6.51490 6.65136 6.68283 6.73171 6.78866 6.96933 7.01806 7.09547 7.34941 7.50089 7.65915 7.72103 8.28199 8.41572 8.62790 9.05557 9.66254 10.26482 11.08650 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.006243 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.567204 B = 4483.997953 C = 6155.246149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.098 4.098 8 C 0.177 3.823 9 N -0.570 5.570 10 C -0.282 4.282 11 H 0.061 0.939 12 C 0.036 3.964 13 N -0.872 5.872 14 Si 0.890 3.110 15 H -0.287 1.287 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.162 3.838 19 C -0.129 4.129 20 C 0.478 3.522 21 O -0.529 6.529 22 O -0.525 6.525 23 C 0.137 3.863 24 O -0.485 6.485 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.258 0.742 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.397 0.603 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 0.204 -7.097 7.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.124 4.124 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.134 4.134 7 C -0.102 4.102 8 C 0.051 3.949 9 N -0.289 5.289 10 C -0.412 4.412 11 H 0.079 0.921 12 C -0.167 4.167 13 N -0.511 5.511 14 Si 0.719 3.281 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.202 1.202 18 C 0.035 3.965 19 C -0.170 4.170 20 C 0.321 3.679 21 O -0.418 6.418 22 O -0.336 6.336 23 C 0.091 3.909 24 O -0.297 6.297 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.050 0.950 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.255 0.745 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.324 0.150 -7.214 7.223 hybrid contribution 0.920 -0.585 0.441 1.176 sum 1.244 -0.435 -6.773 6.900 Atomic orbital electron populations 1.21698 0.95107 1.00910 1.02225 1.20307 0.96014 0.92925 1.01824 1.20169 1.02553 0.96409 0.93301 1.20651 1.01808 0.95218 0.96477 1.20942 1.02045 0.94995 0.97623 1.20935 1.00917 0.99641 0.91947 1.21537 0.95267 0.95511 0.97847 1.20011 0.93221 0.93048 0.88586 1.43758 1.03187 1.34341 1.47618 1.19006 1.06394 1.03002 1.12755 0.92095 1.25153 0.99263 0.96812 0.95518 1.69865 1.17078 1.29404 1.34788 0.86573 0.77598 0.84297 0.79586 1.21394 1.21043 1.20207 1.20777 0.90611 0.91552 0.93574 1.22381 0.90110 0.98588 1.05882 1.24451 0.87775 0.76715 0.78924 1.90655 1.55847 1.65647 1.29631 1.84664 1.45015 1.47789 1.56099 1.18128 0.96417 0.91170 0.85163 1.84706 1.39455 1.71336 1.34245 0.93144 0.91938 0.93169 0.92039 0.91329 0.87068 0.87103 0.86880 0.94983 0.86874 0.93144 0.93255 0.93621 0.88562 0.87433 0.74547 0.75204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.90 37.16 0.37 -1.59 16 2 C -0.07 -1.09 5.79 -27.88 -0.16 -1.25 16 3 C -0.12 -2.14 5.15 -104.47 -0.54 -2.68 16 4 C -0.12 -1.94 9.68 -39.61 -0.38 -2.33 16 5 C -0.14 -2.19 10.04 -39.56 -0.40 -2.59 16 6 C -0.12 -2.06 9.66 -39.60 -0.38 -2.44 16 7 C -0.10 -2.00 5.48 -104.48 -0.57 -2.57 16 8 C 0.18 3.92 5.07 -5.20 -0.03 3.90 16 9 N -0.57 -12.88 2.41 -174.61 -0.42 -13.30 16 10 C -0.28 -6.85 7.94 -15.06 -0.12 -6.97 16 11 H 0.06 1.50 7.90 -52.48 -0.41 1.09 16 12 C 0.04 0.88 3.84 -17.43 -0.07 0.81 16 13 N -0.87 -22.79 11.39 55.49 0.63 -22.15 16 14 Si 0.89 19.82 27.95 -169.99 -4.75 15.07 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 C 0.16 3.30 4.96 -4.04 -0.02 3.28 16 19 C -0.13 -2.38 6.11 -27.88 -0.17 -2.55 16 20 C 0.48 8.07 8.33 36.00 0.30 8.37 16 21 O -0.53 -10.12 16.74 -18.75 -0.31 -10.43 16 22 O -0.52 -7.23 13.42 -39.25 -0.53 -7.76 16 23 C 0.14 2.75 6.65 -39.21 -0.26 2.49 16 24 O -0.48 -10.34 10.29 -19.42 -0.20 -10.54 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.07 1.05 7.69 -51.93 -0.40 0.65 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.11 1.85 8.04 -52.49 -0.42 1.43 16 33 H 0.03 0.67 7.93 -51.92 -0.41 0.26 16 34 H 0.11 2.87 5.21 -51.93 -0.27 2.60 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.05 0.90 7.99 -51.93 -0.41 0.49 16 38 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 40 H 0.40 3.54 9.10 45.56 0.41 3.95 16 41 H 0.39 8.23 5.96 45.56 0.27 8.50 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -28.04 343.18 -7.42 -35.46 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -4.58 Total: 14.61 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.43 Total: -6.13 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.21 Total: -35.45 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.04 Total: -28.73 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.75 Total: 15.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.04 -7.42 -35.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605830319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.134 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds