Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46869 * 2 1 4 4 O 1.33620 * 125.80980 * 270.24286 * 3 2 1 5 5 C 1.34225 * 110.92413 * 180.20547 * 4 3 2 6 6 C 1.50695 * 125.42829 * 179.85678 * 5 4 3 7 7 N 1.46904 * 109.46951 * 269.68958 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 C 1.34158 * 109.14259 * 359.58404 * 5 4 3 21 21 C 1.36503 * 125.80488 * 90.00337 * 3 2 1 22 22 C 1.47234 * 127.19971 * 0.02562 * 21 3 2 23 23 O 1.21531 * 120.00231 * 359.97438 * 22 21 3 24 24 O 1.34767 * 119.99543 * 179.97438 * 22 21 3 25 25 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47292 * 299.99571 * 1 2 3 27 27 H 1.08997 * 109.47334 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.46788 * 240.00277 * 2 1 3 29 29 H 1.08997 * 109.47334 * 120.00400 * 2 1 3 30 30 H 1.09003 * 109.47471 * 149.69262 * 6 5 4 31 31 H 1.08996 * 109.47373 * 29.68413 * 6 5 4 32 32 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 33 33 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 34 34 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 35 35 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 36 36 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 37 37 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 38 38 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 39 39 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 40 40 H 1.07992 * 127.02652 * 180.27377 * 20 5 4 41 41 H 0.96699 * 116.99916 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2885 2.1595 -1.0836 5 6 2.7265 3.3805 -0.7388 6 6 3.1133 4.4738 -1.7011 7 7 4.5448 4.3673 -2.0135 8 6 4.9587 5.4191 -2.9517 9 6 6.4740 5.3553 -3.1532 10 6 7.3050 5.6316 -1.9267 11 1 7.6635 4.8120 -1.3215 12 6 7.6125 6.9302 -1.5803 13 7 7.2580 7.9222 -2.3677 14 14 8.5323 7.2806 0.0073 15 1 9.9940 7.2671 -0.2543 16 1 8.1346 8.6141 0.5258 17 1 8.1996 6.2393 1.0124 18 6 7.0111 4.3306 -4.1543 19 6 7.0276 5.8215 -4.5012 20 6 2.7593 3.4746 0.5991 21 6 2.2985 2.1738 1.1071 22 6 2.1556 1.7678 2.5151 23 8 1.7610 0.6514 2.7886 24 8 2.4625 2.6343 3.5006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9115 5.4446 -1.2484 31 1 2.5329 4.3728 -2.6182 32 1 4.7690 3.4522 -2.3749 33 1 4.6866 6.3941 -2.5474 34 1 4.4583 5.2700 -3.9084 35 1 7.4747 8.8358 -2.1242 36 1 7.9654 3.8561 -3.9259 37 1 6.2848 3.7021 -4.6698 38 1 6.3122 6.1731 -5.2446 39 1 7.9927 6.3281 -4.5009 40 1 3.0618 4.3308 1.1836 41 1 2.3523 2.3226 4.4093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605892043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -59.091810 kcal Electronic energy + Delta-G solvation = -23105.202651 eV Core-core repulsion = 19566.339704 eV Total energy + Delta-G solvation = -3538.862947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.68604 -39.92369 -37.13548 -36.22645 -34.91806 -34.05124 -32.70138 -31.80837 -29.68231 -26.38944 -25.30209 -25.04677 -23.41676 -22.33122 -21.66553 -20.97911 -19.48786 -19.01686 -18.12047 -16.98263 -16.50558 -16.12807 -15.74739 -15.42178 -15.09489 -14.58775 -14.41505 -14.24886 -13.89229 -13.51952 -13.42864 -13.09028 -12.89325 -12.57988 -12.20449 -12.05950 -11.73357 -11.67675 -11.57103 -11.25822 -11.19040 -10.87024 -10.70161 -10.67201 -10.42138 -10.14131 -9.84997 -9.40258 -8.92797 -8.54395 -8.32667 -8.03057 -7.70167 -5.93771 -3.96048 1.06366 2.00019 2.56864 3.00010 3.07277 3.35569 3.42569 3.48719 4.29547 4.49596 4.61763 4.86252 4.90946 4.98332 5.11365 5.23084 5.33614 5.37643 5.45607 5.47378 5.60430 5.69299 5.73258 5.89044 5.97284 6.00118 6.15021 6.28066 6.36657 6.38120 6.45919 6.55717 6.74826 6.83150 7.06758 7.15481 7.47736 7.52342 7.81408 7.83169 7.97766 8.00606 8.55767 9.03272 9.67396 11.15296 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.003868 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.902145 B = 7238.073273 C = 8404.108222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C 0.092 3.908 4 O -0.168 6.168 5 C 0.000 4.000 6 C 0.139 3.861 7 N -0.664 5.664 8 C 0.107 3.893 9 C 0.048 3.952 10 C -0.468 4.468 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.888 3.112 15 H -0.284 1.284 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.217 4.217 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.238 4.238 22 C 0.562 3.438 23 O -0.524 6.524 24 O -0.506 6.506 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.336 0.664 33 H 0.076 0.924 34 H 0.000 1.000 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 -11.270 4.824 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.039 3.961 4 O -0.064 6.064 5 C -0.048 4.048 6 C 0.010 3.990 7 N -0.294 5.294 8 C -0.021 4.021 9 C 0.047 3.953 10 C -0.506 4.506 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.254 4.254 19 C -0.189 4.189 20 C -0.165 4.165 21 C -0.240 4.240 22 C 0.409 3.591 23 O -0.416 6.416 24 O -0.317 6.317 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.057 0.943 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.182 0.818 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.180 -10.916 4.730 17.755 hybrid contribution 0.174 -0.027 0.796 0.815 sum -13.006 -10.942 5.526 17.872 Atomic orbital electron populations 1.21698 0.93258 1.02669 1.02479 1.20431 0.97000 0.86442 1.05294 1.22746 0.96312 0.93972 0.83118 1.83733 1.64819 1.23285 1.34526 1.22417 1.02566 0.84541 0.95265 1.20449 0.90958 0.92937 0.94680 1.60380 1.11838 1.07435 1.49790 1.21591 0.96360 0.94054 0.90104 1.18809 0.90071 0.96389 0.90007 1.20291 1.30692 0.91735 1.07860 0.92343 1.24929 0.95730 0.96366 0.96426 1.70014 1.47205 0.98992 1.36302 0.86665 0.79783 0.77546 0.84411 1.21018 1.21410 1.19763 1.23008 1.01841 0.92477 1.08121 1.22499 1.02269 0.94049 1.00072 1.22610 1.03210 0.97419 0.93265 1.20066 1.16527 0.97235 0.90184 1.19656 0.72630 0.81573 0.85265 1.90851 1.44728 1.21491 1.84525 1.84626 1.80881 1.46742 1.19471 0.91250 0.92072 0.92345 0.89533 0.87047 0.87840 0.94313 0.84711 0.90585 0.98176 0.93341 0.90536 0.92261 0.92269 0.89672 0.81824 0.73025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.56 5.94 -27.88 -0.17 -0.72 16 3 C 0.09 1.22 6.63 -34.93 -0.23 0.99 16 4 O -0.17 -2.40 10.52 7.71 0.08 -2.32 16 5 C 0.00 0.00 6.79 -35.75 -0.24 -0.24 16 6 C 0.14 2.11 6.19 -4.98 -0.03 2.08 16 7 N -0.66 -12.41 6.34 -115.06 -0.73 -13.14 16 8 C 0.11 2.25 5.51 -3.83 -0.02 2.23 16 9 C 0.05 1.14 1.64 -155.66 -0.25 0.89 16 10 C -0.47 -12.57 8.71 -34.44 -0.30 -12.87 16 11 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 12 C 0.07 1.82 5.43 -17.82 -0.10 1.73 16 13 N -0.89 -24.79 12.65 55.43 0.70 -24.09 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.22 -4.66 9.96 -26.69 -0.27 -4.92 16 19 C -0.15 -3.50 9.15 -26.69 -0.24 -3.75 16 20 C -0.15 -2.15 10.93 -37.44 -0.41 -2.56 16 21 C -0.24 -3.37 6.32 -103.29 -0.65 -4.02 16 22 C 0.56 7.44 8.33 34.39 0.29 7.73 16 23 O -0.52 -7.38 15.63 -19.29 -0.30 -7.68 16 24 O -0.51 -5.51 13.34 -40.67 -0.54 -6.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 1.19 6.49 -51.93 -0.34 0.86 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.34 6.08 8.78 -39.29 -0.34 5.73 16 33 H 0.08 1.75 8.13 -51.93 -0.42 1.33 16 34 H 0.00 0.00 8.10 -51.93 -0.42 -0.42 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 2.15 8.14 -51.93 -0.42 1.72 16 40 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.41 2.36 9.11 45.56 0.42 2.77 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.63 356.99 -8.00 -38.62 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.31 Total: 7.32 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.26 Total: -14.34 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.03 Total: -37.23 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.76 Total: -16.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.63 -8.00 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605892043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.467 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds