Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46869 * 2 1 4 4 O 1.33620 * 125.80980 * 270.24286 * 3 2 1 5 5 C 1.34225 * 110.92413 * 180.20547 * 4 3 2 6 6 C 1.50695 * 125.42829 * 179.85678 * 5 4 3 7 7 N 1.46904 * 109.46951 * 269.68958 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 C 1.34158 * 109.14259 * 359.58404 * 5 4 3 21 21 C 1.36503 * 125.80488 * 90.00337 * 3 2 1 22 22 C 1.47234 * 127.19971 * 0.02562 * 21 3 2 23 23 O 1.21531 * 120.00231 * 359.97438 * 22 21 3 24 24 O 1.34767 * 119.99543 * 179.97438 * 22 21 3 25 25 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47292 * 299.99571 * 1 2 3 27 27 H 1.08997 * 109.47334 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.46788 * 240.00277 * 2 1 3 29 29 H 1.08997 * 109.47334 * 120.00400 * 2 1 3 30 30 H 1.09003 * 109.47471 * 149.69262 * 6 5 4 31 31 H 1.08996 * 109.47373 * 29.68413 * 6 5 4 32 32 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 33 33 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 34 34 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 35 35 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 36 36 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 37 37 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 38 38 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 39 39 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 40 40 H 1.07992 * 127.02652 * 180.27377 * 20 5 4 41 41 H 0.96699 * 116.99916 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2885 2.1595 -1.0836 5 6 2.7265 3.3805 -0.7388 6 6 3.1133 4.4738 -1.7011 7 7 4.5448 4.3673 -2.0135 8 6 4.9587 5.4191 -2.9517 9 6 6.4740 5.3553 -3.1532 10 6 7.3050 5.6316 -1.9267 11 1 7.6635 4.8120 -1.3215 12 6 7.6125 6.9302 -1.5803 13 7 7.2580 7.9222 -2.3677 14 14 8.5323 7.2806 0.0073 15 1 9.9940 7.2671 -0.2543 16 1 8.1346 8.6141 0.5258 17 1 8.1996 6.2393 1.0124 18 6 7.0111 4.3306 -4.1543 19 6 7.0276 5.8215 -4.5012 20 6 2.7593 3.4746 0.5991 21 6 2.2985 2.1738 1.1071 22 6 2.1556 1.7678 2.5151 23 8 1.7610 0.6514 2.7886 24 8 2.4625 2.6343 3.5006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9115 5.4446 -1.2484 31 1 2.5329 4.3728 -2.6182 32 1 4.7690 3.4522 -2.3749 33 1 4.6866 6.3941 -2.5474 34 1 4.4583 5.2700 -3.9084 35 1 7.4747 8.8358 -2.1242 36 1 7.9654 3.8561 -3.9259 37 1 6.2848 3.7021 -4.6698 38 1 6.3122 6.1731 -5.2446 39 1 7.9927 6.3281 -4.5009 40 1 3.0618 4.3308 1.1836 41 1 2.3523 2.3226 4.4093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605892043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = -78.162579 kcal Electronic energy + Delta-G solvation = -23106.029622 eV Core-core repulsion = 19566.339704 eV Total energy + Delta-G solvation = -3539.689917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.76303 -40.90247 -38.84095 -37.17324 -36.31051 -35.00476 -33.91940 -33.73778 -30.84778 -27.91322 -27.03288 -26.05940 -24.78978 -23.35600 -22.80593 -22.68350 -20.94083 -20.46092 -19.11164 -18.30838 -17.73954 -17.51630 -16.85985 -16.69040 -16.41570 -16.31197 -15.46146 -15.40156 -15.38816 -15.07012 -14.66274 -14.33967 -13.92125 -13.78749 -13.43139 -13.31634 -13.13202 -12.99503 -12.79309 -12.63079 -12.59974 -12.51264 -12.32260 -12.06223 -11.96535 -11.63688 -11.24425 -10.94542 -10.86562 -10.30659 -9.92656 -9.60432 -9.13406 -8.00753 -6.07155 0.04355 0.86296 1.43251 1.46249 1.53436 1.55990 1.96415 2.15336 2.50112 3.22436 3.29120 3.43399 3.61488 3.72263 4.06615 4.09665 4.24739 4.25722 4.33890 4.40419 4.44678 4.57334 4.63697 4.74246 4.78297 4.81925 4.92736 4.95413 5.01808 5.06912 5.08215 5.24052 5.26975 5.33955 5.53992 5.70670 5.72650 5.89657 5.97297 6.25417 6.48123 6.64099 6.95594 6.97735 7.58090 9.07313 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.003868 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.902145 B = 7238.073273 C = 8404.108222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C 0.099 3.901 4 O -0.171 6.171 5 C -0.009 4.009 6 C 0.144 3.856 7 N -0.677 5.677 8 C 0.122 3.878 9 C 0.022 3.978 10 C -0.478 4.478 11 H 0.043 0.957 12 C 0.025 3.975 13 N -0.911 5.911 14 Si 0.941 3.059 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.192 4.192 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.259 4.259 22 C 0.565 3.435 23 O -0.536 6.536 24 O -0.507 6.507 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.339 0.661 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.163 0.837 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -12.633 4.901 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C 0.045 3.955 4 O -0.067 6.067 5 C -0.057 4.057 6 C 0.016 3.984 7 N -0.308 5.308 8 C -0.006 4.006 9 C 0.021 3.979 10 C -0.517 4.517 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.550 5.550 14 Si 0.768 3.232 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.229 4.229 19 C -0.196 4.196 20 C -0.173 4.173 21 C -0.262 4.262 22 C 0.411 3.589 23 O -0.429 6.429 24 O -0.320 6.320 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.181 0.819 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -14.138 -12.284 4.831 19.343 hybrid contribution 0.468 0.343 0.814 1.000 sum -13.670 -11.941 5.646 19.009 Atomic orbital electron populations 1.21687 0.92020 1.03982 1.01982 1.20597 0.97920 0.84577 1.06031 1.23364 0.94781 0.94781 0.82569 1.83729 1.64911 1.23091 1.34941 1.22275 1.03414 0.84931 0.95091 1.20394 0.89170 0.93294 0.95579 1.60239 1.14343 1.06969 1.49292 1.21237 0.94569 0.93582 0.91254 1.18947 0.91476 0.98236 0.89203 1.20502 1.30947 0.91362 1.08841 0.93831 1.25504 0.96701 0.96391 0.98810 1.70101 1.48338 0.99052 1.37484 0.85836 0.78763 0.77219 0.81417 1.20765 1.21119 1.19880 1.22987 1.02040 0.91659 1.06225 1.22393 1.01265 0.95498 1.00435 1.22734 1.03160 0.97875 0.93529 1.20297 1.17423 0.97218 0.91215 1.19531 0.72444 0.81526 0.85373 1.90841 1.45436 1.21922 1.84748 1.84580 1.80354 1.46374 1.20720 0.89063 0.93389 0.91984 0.87549 0.87457 0.87725 0.92421 0.84278 0.93190 0.96295 0.93508 0.91048 0.89198 0.90855 0.92484 0.81918 0.70516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 71.98 0.71 -1.45 16 2 C -0.05 -1.00 5.94 29.85 0.18 -0.83 16 3 C 0.10 2.47 6.63 25.28 0.17 2.64 16 4 O -0.17 -4.63 10.52 4.67 0.05 -4.58 16 5 C -0.01 -0.26 6.79 24.75 0.17 -0.09 16 6 C 0.14 4.21 6.19 85.55 0.53 4.74 16 7 N -0.68 -24.59 6.34 -517.94 -3.29 -27.88 16 8 C 0.12 5.04 5.51 86.30 0.48 5.51 16 9 C 0.02 1.04 1.64 -52.93 -0.09 0.95 16 10 C -0.48 -25.84 8.71 25.60 0.22 -25.62 16 11 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 12 C 0.02 1.36 5.43 84.65 0.46 1.82 16 13 N -0.91 -51.41 12.65 21.45 0.27 -51.14 16 14 Si 0.94 44.07 29.54 68.60 2.03 46.10 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 C -0.19 -7.92 9.96 30.62 0.30 -7.61 16 19 C -0.16 -7.25 9.15 30.62 0.28 -6.97 16 20 C -0.15 -4.46 10.93 23.65 0.26 -4.20 16 21 C -0.26 -7.12 6.32 -19.00 -0.12 -7.24 16 22 C 0.56 14.39 8.33 70.19 0.58 14.97 16 23 O -0.54 -14.49 15.63 19.74 0.31 -14.18 16 24 O -0.51 -10.41 13.34 -56.78 -0.76 -11.17 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 2.12 6.49 -2.39 -0.02 2.11 16 30 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 11.76 8.78 -89.69 -0.79 10.97 16 33 H 0.05 2.30 8.13 -2.39 -0.02 2.28 16 34 H 0.02 0.71 8.10 -2.39 -0.02 0.69 16 35 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.43 4.27 9.11 -74.06 -0.67 3.60 16 Total: -1.00 -64.68 356.99 2.34 -62.34 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.41 Total: 23.88 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.13 Total: -23.37 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -3.01 Total: -79.02 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.40 Total: -29.93 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.68 2.34 -62.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605892043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.826 kcal (2) G-P(sol) polarization free energy of solvation -64.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds