Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00513 * 2 1 4 4 C 1.38756 * 120.04967 * 0.24666 * 3 2 1 5 5 C 1.38124 * 119.94072 * 180.29799 * 4 3 2 6 6 C 1.38289 * 120.05524 * 359.47580 * 5 4 3 7 7 C 1.38239 * 120.10954 * 0.22792 * 6 5 4 8 8 C 1.50704 * 119.96999 * 180.02562 * 7 6 5 9 9 C 1.38167 * 120.05818 * 0.05062 * 7 6 5 10 10 C 1.50703 * 120.02759 * 179.97438 * 9 7 6 11 11 N 1.46503 * 109.47042 * 96.78001 * 10 9 7 12 12 C 1.36933 * 119.99838 * 93.72730 * 11 10 9 13 13 H 1.08005 * 119.99962 * 218.89893 * 12 11 10 14 14 C 1.38809 * 119.99983 * 38.90169 * 12 11 10 15 15 N 1.31620 * 120.00321 * 24.09934 * 14 12 11 16 16 Si 1.86805 * 119.99834 * 204.09726 * 14 12 11 17 17 H 1.48498 * 109.47269 * 59.99913 * 16 14 12 18 18 H 1.48501 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46957 * 299.99798 * 16 14 12 20 20 C 1.46501 * 120.00145 * 273.72520 * 11 10 9 21 21 C 1.52996 * 109.47225 * 96.43650 * 20 11 10 22 22 C 1.50702 * 109.47398 * 180.02562 * 21 20 11 23 23 O 1.20822 * 119.99612 * 359.97438 * 22 21 20 24 24 O 1.34226 * 120.00189 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47072 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.46801 * 60.00577 * 1 2 3 28 28 H 1.07999 * 120.03037 * 0.04934 * 4 3 2 29 29 H 1.08000 * 119.97161 * 179.75156 * 5 4 3 30 30 H 1.08002 * 119.94089 * 180.25351 * 6 5 4 31 31 H 1.08995 * 109.46926 * 88.98521 * 8 7 6 32 32 H 1.08993 * 109.47068 * 208.98961 * 8 7 6 33 33 H 1.09008 * 109.47068 * 328.98850 * 8 7 6 34 34 H 1.08998 * 109.47135 * 216.78203 * 10 9 7 35 35 H 1.08997 * 109.46862 * 336.78408 * 10 9 7 36 36 H 0.97000 * 120.00097 * 184.98536 * 15 14 12 37 37 H 1.08994 * 109.47181 * 216.44011 * 20 11 10 38 38 H 1.09009 * 109.46946 * 336.43784 * 20 11 10 39 39 H 1.09003 * 109.46979 * 299.99828 * 21 20 11 40 40 H 1.08996 * 109.47109 * 59.99871 * 21 20 11 41 41 H 0.96699 * 117.00125 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0015 7 6 4.0560 2.5170 -0.0005 8 6 5.5609 2.5981 -0.0004 9 6 3.4311 1.2847 0.0000 10 6 4.2537 0.0220 0.0005 11 7 4.3835 -0.4756 1.3723 12 6 3.5018 -1.4089 1.8483 13 1 3.1464 -1.3463 2.8663 14 6 3.0648 -2.4355 1.0226 15 7 3.7982 -2.8124 -0.0033 16 14 1.4359 -3.2823 1.3675 17 1 0.3375 -2.2845 1.3112 18 1 1.2004 -4.3364 0.3483 19 1 1.4750 -3.8998 2.7174 20 6 5.4567 0.0252 2.2348 21 6 4.9176 1.1531 3.1168 22 6 6.0216 1.6688 4.0036 23 8 7.1261 1.1835 3.9372 24 8 5.7780 2.6670 4.8671 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2129 2.3203 0.0100 29 1 1.3341 4.5113 -0.0011 30 1 3.7923 4.6380 -0.0022 31 1 5.9225 2.6366 1.0271 32 1 5.9720 1.7196 -0.4976 33 1 5.8764 3.4967 -0.5306 34 1 3.7625 -0.7319 -0.6146 35 1 5.2434 0.2330 -0.4046 36 1 3.4607 -3.4790 -0.6219 37 1 5.8243 -0.7847 2.8648 38 1 6.2716 0.4042 1.6179 39 1 4.5500 1.9631 2.4867 40 1 4.1028 0.7742 3.7336 41 1 6.5173 2.9637 5.4152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607316026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -82.230538 kcal Electronic energy + Delta-G solvation = -25050.362727 eV Core-core repulsion = 21510.496410 eV Total energy + Delta-G solvation = -3539.866317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90688 -39.60794 -37.14340 -36.04024 -35.50464 -32.27625 -31.94308 -30.74794 -29.16951 -26.99123 -26.37353 -25.28849 -24.61011 -22.02411 -20.92525 -20.21623 -19.75718 -17.74980 -17.11749 -16.63177 -16.10356 -15.78767 -15.60370 -15.13854 -14.96390 -14.57915 -13.90486 -13.68768 -13.40489 -13.28275 -13.04718 -12.74285 -12.57549 -12.35227 -11.86926 -11.66951 -11.56579 -11.38537 -11.21239 -11.14834 -11.01741 -10.62947 -10.48564 -10.39572 -10.21756 -10.15777 -10.01930 -9.86244 -9.72308 -8.35004 -8.05124 -7.44211 -6.61657 -5.74890 -3.32558 1.87322 2.06311 2.60469 3.38418 3.43898 3.45992 3.49476 4.02823 4.29919 4.59043 5.27218 5.30416 5.38905 5.48209 5.52434 5.60721 5.62807 5.70086 5.72022 5.76711 5.83802 5.97710 6.00467 6.01869 6.12734 6.21061 6.33936 6.37930 6.62266 6.66862 6.69944 6.78052 6.92776 7.02765 7.12794 7.17935 7.45044 7.65319 7.86121 8.17520 8.24465 8.54692 9.20306 9.83735 10.40460 11.25520 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.008097 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.924770 B = 3457.095169 C = 4828.145471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.273 6.273 3 C 0.151 3.849 4 C -0.226 4.226 5 C -0.097 4.097 6 C -0.167 4.167 7 C -0.058 4.058 8 C -0.115 4.115 9 C -0.110 4.110 10 C 0.185 3.815 11 N -0.565 5.565 12 C -0.259 4.259 13 H 0.054 0.946 14 C 0.039 3.961 15 N -0.877 5.877 16 Si 0.885 3.115 17 H -0.272 1.272 18 H -0.295 1.295 19 H -0.288 1.288 20 C 0.162 3.838 21 C -0.138 4.138 22 C 0.479 3.521 23 O -0.522 6.522 24 O -0.525 6.525 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.253 0.747 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 11.650 0.846 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.185 6.185 3 C 0.104 3.896 4 C -0.245 4.245 5 C -0.116 4.116 6 C -0.186 4.186 7 C -0.059 4.059 8 C -0.172 4.172 9 C -0.114 4.114 10 C 0.060 3.940 11 N -0.283 5.283 12 C -0.388 4.388 13 H 0.072 0.928 14 C -0.163 4.163 15 N -0.518 5.518 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.214 1.214 20 C 0.034 3.966 21 C -0.178 4.178 22 C 0.322 3.678 23 O -0.410 6.410 24 O -0.337 6.337 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.344 10.915 0.471 11.174 hybrid contribution -0.981 0.168 0.635 1.181 sum -3.326 11.083 1.106 11.624 Atomic orbital electron populations 1.23027 0.80729 1.03349 0.99884 1.86441 1.19002 1.25579 1.87436 1.18889 0.92100 0.84079 0.94556 1.21128 0.99302 0.92785 1.11241 1.20634 0.94419 0.96340 1.00216 1.20742 0.93683 0.97338 1.06803 1.19530 0.95509 0.91967 0.98880 1.20899 0.91830 1.02417 1.02036 1.20411 0.91690 0.97592 1.01665 1.19888 0.95373 0.90315 0.88439 1.43653 1.30757 1.44086 1.09815 1.18745 1.19590 1.02058 0.98439 0.92827 1.24930 0.97968 0.94842 0.98548 1.70137 1.34156 1.30875 1.16635 0.86746 0.86112 0.78564 0.77094 1.19875 1.22081 1.21415 1.20659 0.90131 0.93021 0.92752 1.22460 0.95806 1.02066 0.97502 1.24216 0.90136 0.75603 0.77894 1.90673 1.25885 1.57211 1.67237 1.84639 1.46422 1.51628 1.50976 0.88849 0.93472 0.93882 0.86616 0.87112 0.87158 0.91634 0.90627 0.92332 0.88262 0.94242 0.93682 0.92646 0.93507 0.88313 0.88263 0.74397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.41 101.05 0.95 1.38 16 2 O -0.27 -5.72 8.26 -19.43 -0.16 -5.88 16 3 C 0.15 2.97 6.66 -39.22 -0.26 2.71 16 4 C -0.23 -3.78 9.04 -39.43 -0.36 -4.13 16 5 C -0.10 -1.48 10.04 -39.60 -0.40 -1.88 16 6 C -0.17 -2.58 9.70 -39.56 -0.38 -2.97 16 7 C -0.06 -0.99 4.72 -104.65 -0.49 -1.48 16 8 C -0.12 -1.74 9.16 36.01 0.33 -1.41 16 9 C -0.11 -2.19 5.26 -104.48 -0.55 -2.74 16 10 C 0.19 4.18 4.82 -5.19 -0.03 4.15 16 11 N -0.57 -13.34 2.41 -174.61 -0.42 -13.76 16 12 C -0.26 -6.75 8.90 -15.06 -0.13 -6.89 16 13 H 0.05 1.42 7.94 -52.48 -0.42 1.01 16 14 C 0.04 1.03 4.28 -17.43 -0.07 0.95 16 15 N -0.88 -24.51 11.81 55.49 0.66 -23.85 16 16 Si 0.89 20.82 29.24 -169.99 -4.97 15.84 16 17 H -0.27 -5.95 5.13 56.52 0.29 -5.66 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.16 3.40 5.01 -4.04 -0.02 3.38 16 21 C -0.14 -2.49 5.76 -27.88 -0.16 -2.65 16 22 C 0.48 7.96 8.33 36.01 0.30 8.26 16 23 O -0.52 -9.94 16.74 -18.75 -0.31 -10.25 16 24 O -0.53 -7.02 13.42 -39.25 -0.53 -7.55 16 25 H 0.09 1.53 6.63 -51.93 -0.34 1.19 16 26 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 27 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 28 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 32 H 0.08 1.19 5.84 -51.93 -0.30 0.89 16 33 H 0.06 0.74 8.09 -51.92 -0.42 0.32 16 34 H 0.10 2.57 5.39 -51.93 -0.28 2.29 16 35 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 36 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 38 H 0.05 0.95 7.26 -51.92 -0.38 0.57 16 39 H 0.10 1.77 5.67 -51.93 -0.29 1.48 16 40 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.40 3.42 9.10 45.56 0.41 3.83 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -30.37 332.65 -6.71 -37.08 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.71 Total: 6.66 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.28 Total: -3.31 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.23 Total: -37.61 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.00 Total: -23.68 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.97 Total: 15.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.37 -6.71 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607316026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.149 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds